data_5IWL # _model_server_result.job_id 3fR7fCsu0X6MdrOwAnu2wQ _model_server_result.datetime_utc '2024-12-23 08:12:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5iwl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":204}' # _entry.id 5IWL # _exptl.entry_id 5IWL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5IWL _cell.length_a 103.28 _cell.length_b 103.28 _cell.length_c 131.13 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IWL _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 B CYS 22 1_555 A SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 145 B CYS 145 1_555 A SG CYS 215 B CYS 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 B SG CYS 22 A CYS 22 1_555 B SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 B SG CYS 145 A CYS 145 1_555 B SG CYS 215 A CYS 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf5 C SG CYS 23 C CYS 23 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 D SG CYS 23 D CYS 23 1_555 D SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? covale ? covale1 A C PCA 1 B PCA 1 1_555 A N VAL 2 B VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 B C PCA 1 A PCA 1 1_555 B N VAL 2 A VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 C C PCA 1 C PCA 1 1_555 C N LEU 2 C LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 C ND2 ASN 16 C ASN 16 1_555 E C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 C ND2 ASN 32 C ASN 32 1_555 F C1 NAG . C NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale6 C ND2 ASN 93 C ASN 93 1_555 G C1 NAG . C NAG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale7 D C PCA 1 D PCA 1 1_555 D N LEU 2 D LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 D ND2 ASN 16 D ASN 16 1_555 J C1 NAG . D NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale9 D ND2 ASN 32 D ASN 32 1_555 I C1 NAG . D NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale10 D ND2 ASN 93 D ASN 93 1_555 K C1 NAG . D NAG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 283 n n C1 C2 PGE sing 284 n n C1 H1 PGE sing 285 n n C1 H12 PGE sing 286 n n O1 HO1 PGE sing 287 n n C2 O2 PGE sing 288 n n C2 H2 PGE sing 289 n n C2 H22 PGE sing 290 n n O2 C3 PGE sing 291 n n C3 C4 PGE sing 292 n n C3 H3 PGE sing 293 n n C3 H32 PGE sing 294 n n C4 O3 PGE sing 295 n n C4 H4 PGE sing 296 n n C4 H42 PGE sing 297 n n O4 C6 PGE sing 298 n n O4 HO4 PGE sing 299 n n C6 C5 PGE sing 300 n n C6 H6 PGE sing 301 n n C6 H62 PGE sing 302 n n C5 O3 PGE sing 303 n n C5 H5 PGE sing 304 n n C5 H52 PGE sing 305 n n # _atom_sites.entry_id 5IWL _atom_sites.fract_transf_matrix[1][1] 0.009682 _atom_sites.fract_transf_matrix[1][2] 0.00559 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01118 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007626 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG C 1 201 115 NAG NAG . F 3 NAG C 1 202 116 NAG NAG . G 3 NAG C 1 203 117 NAG NAG . H 4 PGE C 1 204 2 PGE PGE . I 3 NAG D 1 201 115 NAG NAG . J 3 NAG D 1 202 116 NAG NAG . K 3 NAG D 1 203 117 NAG NAG . L 4 PGE D 1 204 1 PGE PGE . M 5 HOH B 1 301 6 HOH HOH . N 5 HOH A 1 301 7 HOH HOH . N 5 HOH A 2 302 2 HOH HOH . N 5 HOH A 3 303 5 HOH HOH . N 5 HOH A 4 304 4 HOH HOH . N 5 HOH A 5 305 3 HOH HOH . O 5 HOH D 1 301 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . L 4 4.387 52.189 11.226 1 64.88 ? C1 PGE 204 D 1 HETATM 2 O O1 PGE . . . L 4 4.059 53.564 11.066 1 64.72 ? O1 PGE 204 D 1 HETATM 3 C C2 PGE . . . L 4 4.357 51.526 9.862 1 65.55 ? C2 PGE 204 D 1 HETATM 4 O O2 PGE . . . L 4 4.386 50.12 10.011 1 66.47 ? O2 PGE 204 D 1 HETATM 5 C C3 PGE . . . L 4 4.112 49.393 8.822 1 67.04 ? C3 PGE 204 D 1 HETATM 6 C C4 PGE . . . L 4 4.168 47.908 9.137 1 66.98 ? C4 PGE 204 D 1 HETATM 7 O O4 PGE . . . L 4 8.208 46.933 7.089 1 64.21 ? O4 PGE 204 D 1 HETATM 8 C C6 PGE . . . L 4 6.984 46.483 7.654 1 64.97 ? C6 PGE 204 D 1 HETATM 9 C C5 PGE . . . L 4 5.964 47.605 7.59 1 65.91 ? C5 PGE 204 D 1 HETATM 10 O O3 PGE . . . L 4 4.706 47.155 8.065 1 66.63 ? O3 PGE 204 D 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #