data_5IX1 # _model_server_result.job_id LNF1AG0HknuIuJ2oKNW0Ag _model_server_result.datetime_utc '2025-08-21 12:44:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ix1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":501}' # _entry.id 5IX1 # _exptl.entry_id 5IX1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IX1 _cell.length_a 111.353 _cell.length_b 149.079 _cell.length_c 173.473 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IX1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C THR 3 P THR 3 1_555 C N M3L 4 P M3L 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale2 C C M3L 4 P M3L 4 1_555 C N GLN 5 P GLN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale3 D C THR 3 Q THR 3 1_555 D N M3L 4 Q M3L 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale4 D C M3L 4 Q M3L 4 1_555 D N GLN 5 Q GLN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? metalc ? metalc1 A OD1 ASN 34 A ASN 39 1_555 G MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? metalc ? metalc2 A SG CYS 408 A CYS 413 1_555 E ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc3 A SG CYS 411 A CYS 416 1_555 E ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc4 A SG CYS 430 A CYS 435 1_555 E ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc5 A SG CYS 441 A CYS 446 1_555 E ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc6 F O1G ANP . A ANP 502 1_555 G MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc7 F O1B ANP . A ANP 502 1_555 G MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc8 F O1A ANP . A ANP 502 1_555 G MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc9 G MG MG . A MG 503 1_555 K O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc10 G MG MG . A MG 503 1_555 K O HOH . A HOH 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc11 B OD1 ASN 34 B ASN 39 1_555 J MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.722 ? metalc ? metalc12 B SG CYS 408 B CYS 413 1_555 H ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc13 B SG CYS 411 B CYS 416 1_555 H ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc14 B SG CYS 430 B CYS 435 1_555 H ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc15 B SG CYS 441 B CYS 446 1_555 H ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc16 I O3G ANP . B ANP 502 1_555 J MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc17 I O2B ANP . B ANP 502 1_555 J MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc18 I O2A ANP . B ANP 502 1_555 J MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc19 J MG MG . B MG 503 1_555 L O HOH . B HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc20 J MG MG . B MG 503 1_555 L O HOH . B HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5IX1 _atom_sites.fract_transf_matrix[1][1] 0.00898 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006708 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005765 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 501 499 ZN ZN . F 4 ANP A 1 502 501 ANP ANP . G 5 MG A 1 503 502 MG MG . H 3 ZN B 1 501 499 ZN ZN . I 4 ANP B 1 502 501 ANP ANP . J 5 MG B 1 503 502 MG MG . K 6 HOH A 1 601 12 HOH HOH . K 6 HOH A 2 602 43 HOH HOH . K 6 HOH A 3 603 35 HOH HOH . K 6 HOH A 4 604 26 HOH HOH . K 6 HOH A 5 605 14 HOH HOH . K 6 HOH A 6 606 16 HOH HOH . K 6 HOH A 7 607 56 HOH HOH . K 6 HOH A 8 608 31 HOH HOH . K 6 HOH A 9 609 8 HOH HOH . K 6 HOH A 10 610 7 HOH HOH . K 6 HOH A 11 611 23 HOH HOH . K 6 HOH A 12 612 11 HOH HOH . K 6 HOH A 13 613 58 HOH HOH . K 6 HOH A 14 614 40 HOH HOH . K 6 HOH A 15 615 5 HOH HOH . K 6 HOH A 16 616 27 HOH HOH . K 6 HOH A 17 617 36 HOH HOH . K 6 HOH A 18 618 1 HOH HOH . K 6 HOH A 19 619 41 HOH HOH . K 6 HOH A 20 620 34 HOH HOH . K 6 HOH A 21 621 25 HOH HOH . K 6 HOH A 22 622 2 HOH HOH . K 6 HOH A 23 623 37 HOH HOH . K 6 HOH A 24 624 22 HOH HOH . K 6 HOH A 25 625 24 HOH HOH . K 6 HOH A 26 626 32 HOH HOH . K 6 HOH A 27 627 19 HOH HOH . K 6 HOH A 28 628 6 HOH HOH . K 6 HOH A 29 629 15 HOH HOH . K 6 HOH A 30 630 20 HOH HOH . K 6 HOH A 31 631 17 HOH HOH . K 6 HOH A 32 632 33 HOH HOH . K 6 HOH A 33 633 42 HOH HOH . K 6 HOH A 34 634 39 HOH HOH . K 6 HOH A 35 635 46 HOH HOH . K 6 HOH A 36 636 48 HOH HOH . K 6 HOH A 37 637 38 HOH HOH . K 6 HOH A 38 638 44 HOH HOH . K 6 HOH A 39 639 45 HOH HOH . K 6 HOH A 40 640 18 HOH HOH . K 6 HOH A 41 641 9 HOH HOH . K 6 HOH A 42 642 10 HOH HOH . K 6 HOH A 43 643 59 HOH HOH . L 6 HOH B 1 601 50 HOH HOH . L 6 HOH B 2 602 49 HOH HOH . L 6 HOH B 3 603 30 HOH HOH . L 6 HOH B 4 604 29 HOH HOH . L 6 HOH B 5 605 62 HOH HOH . L 6 HOH B 6 606 61 HOH HOH . L 6 HOH B 7 607 13 HOH HOH . L 6 HOH B 8 608 63 HOH HOH . L 6 HOH B 9 609 28 HOH HOH . L 6 HOH B 10 610 66 HOH HOH . L 6 HOH B 11 611 65 HOH HOH . L 6 HOH B 12 612 60 HOH HOH . L 6 HOH B 13 613 47 HOH HOH . L 6 HOH B 14 614 52 HOH HOH . L 6 HOH B 15 615 3 HOH HOH . L 6 HOH B 16 616 64 HOH HOH . L 6 HOH B 17 617 4 HOH HOH . L 6 HOH B 18 618 21 HOH HOH . L 6 HOH B 19 619 53 HOH HOH . L 6 HOH B 20 620 67 HOH HOH . L 6 HOH B 21 621 55 HOH HOH . L 6 HOH B 22 622 51 HOH HOH . L 6 HOH B 23 623 54 HOH HOH . L 6 HOH B 24 624 57 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x 73.675 _atom_site.Cartn_y 68.644 _atom_site.Cartn_z 88.818 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 87.92 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 501 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 83 _model_server_stats.parse_time_ms 44 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 1238 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #