data_5IX1
#
_model_server_result.job_id            KKuRXXydQm12OxeUXuF4YA 
_model_server_result.datetime_utc      '2025-08-21 12:44:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ix1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":502}' 
#
_entry.id    5IX1 
#
_exptl.entry_id    5IX1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5IX1 
_cell.length_a            111.353 
_cell.length_b            149.079 
_cell.length_c            173.473 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5IX1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C THR 3 P THR 3 1_555 C N M3L 4 P M3L 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale2 C C M3L 4 P M3L 4 1_555 C N GLN 5 P GLN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale3 D C THR 3 Q THR 3 1_555 D N M3L 4 Q M3L 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? 
covale ? covale4 D C M3L 4 Q M3L 4 1_555 D N GLN 5 Q GLN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
metalc ? metalc1 A OD1 ASN 34 A ASN 39 1_555 G MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? 
metalc ? metalc2 A SG CYS 408 A CYS 413 1_555 E ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc3 A SG CYS 411 A CYS 416 1_555 E ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc4 A SG CYS 430 A CYS 435 1_555 E ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? 
metalc ? metalc5 A SG CYS 441 A CYS 446 1_555 E ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? 
metalc ? metalc6 F O1G ANP . A ANP 502 1_555 G MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc7 F O1B ANP . A ANP 502 1_555 G MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc8 F O1A ANP . A ANP 502 1_555 G MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc9 G MG MG . A MG 503 1_555 K O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc10 G MG MG . A MG 503 1_555 K O HOH . A HOH 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc11 B OD1 ASN 34 B ASN 39 1_555 J MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.722 ? 
metalc ? metalc12 B SG CYS 408 B CYS 413 1_555 H ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc13 B SG CYS 411 B CYS 416 1_555 H ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc14 B SG CYS 430 B CYS 435 1_555 H ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc15 B SG CYS 441 B CYS 446 1_555 H ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc16 I O3G ANP . B ANP 502 1_555 J MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc17 I O2B ANP . B ANP 502 1_555 J MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc18 I O2A ANP . B ANP 502 1_555 J MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc19 J MG MG . B MG 503 1_555 L O HOH . B HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc20 J MG MG . B MG 503 1_555 L O HOH . B HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     5IX1 
_atom_sites.fract_transf_matrix[1][1]    0.00898 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006708 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005765 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ZN A 1 501 499 ZN ZN . 
F 4 ANP A 1 502 501 ANP ANP . 
G 5 MG A 1 503 502 MG MG . 
H 3 ZN B 1 501 499 ZN ZN . 
I 4 ANP B 1 502 501 ANP ANP . 
J 5 MG B 1 503 502 MG MG . 
K 6 HOH A 1 601 12 HOH HOH . 
K 6 HOH A 2 602 43 HOH HOH . 
K 6 HOH A 3 603 35 HOH HOH . 
K 6 HOH A 4 604 26 HOH HOH . 
K 6 HOH A 5 605 14 HOH HOH . 
K 6 HOH A 6 606 16 HOH HOH . 
K 6 HOH A 7 607 56 HOH HOH . 
K 6 HOH A 8 608 31 HOH HOH . 
K 6 HOH A 9 609 8 HOH HOH . 
K 6 HOH A 10 610 7 HOH HOH . 
K 6 HOH A 11 611 23 HOH HOH . 
K 6 HOH A 12 612 11 HOH HOH . 
K 6 HOH A 13 613 58 HOH HOH . 
K 6 HOH A 14 614 40 HOH HOH . 
K 6 HOH A 15 615 5 HOH HOH . 
K 6 HOH A 16 616 27 HOH HOH . 
K 6 HOH A 17 617 36 HOH HOH . 
K 6 HOH A 18 618 1 HOH HOH . 
K 6 HOH A 19 619 41 HOH HOH . 
K 6 HOH A 20 620 34 HOH HOH . 
K 6 HOH A 21 621 25 HOH HOH . 
K 6 HOH A 22 622 2 HOH HOH . 
K 6 HOH A 23 623 37 HOH HOH . 
K 6 HOH A 24 624 22 HOH HOH . 
K 6 HOH A 25 625 24 HOH HOH . 
K 6 HOH A 26 626 32 HOH HOH . 
K 6 HOH A 27 627 19 HOH HOH . 
K 6 HOH A 28 628 6 HOH HOH . 
K 6 HOH A 29 629 15 HOH HOH . 
K 6 HOH A 30 630 20 HOH HOH . 
K 6 HOH A 31 631 17 HOH HOH . 
K 6 HOH A 32 632 33 HOH HOH . 
K 6 HOH A 33 633 42 HOH HOH . 
K 6 HOH A 34 634 39 HOH HOH . 
K 6 HOH A 35 635 46 HOH HOH . 
K 6 HOH A 36 636 48 HOH HOH . 
K 6 HOH A 37 637 38 HOH HOH . 
K 6 HOH A 38 638 44 HOH HOH . 
K 6 HOH A 39 639 45 HOH HOH . 
K 6 HOH A 40 640 18 HOH HOH . 
K 6 HOH A 41 641 9 HOH HOH . 
K 6 HOH A 42 642 10 HOH HOH . 
K 6 HOH A 43 643 59 HOH HOH . 
L 6 HOH B 1 601 50 HOH HOH . 
L 6 HOH B 2 602 49 HOH HOH . 
L 6 HOH B 3 603 30 HOH HOH . 
L 6 HOH B 4 604 29 HOH HOH . 
L 6 HOH B 5 605 62 HOH HOH . 
L 6 HOH B 6 606 61 HOH HOH . 
L 6 HOH B 7 607 13 HOH HOH . 
L 6 HOH B 8 608 63 HOH HOH . 
L 6 HOH B 9 609 28 HOH HOH . 
L 6 HOH B 10 610 66 HOH HOH . 
L 6 HOH B 11 611 65 HOH HOH . 
L 6 HOH B 12 612 60 HOH HOH . 
L 6 HOH B 13 613 47 HOH HOH . 
L 6 HOH B 14 614 52 HOH HOH . 
L 6 HOH B 15 615 3 HOH HOH . 
L 6 HOH B 16 616 64 HOH HOH . 
L 6 HOH B 17 617 4 HOH HOH . 
L 6 HOH B 18 618 21 HOH HOH . 
L 6 HOH B 19 619 53 HOH HOH . 
L 6 HOH B 20 620 67 HOH HOH . 
L 6 HOH B 21 621 55 HOH HOH . 
L 6 HOH B 22 622 51 HOH HOH . 
L 6 HOH B 23 623 54 HOH HOH . 
L 6 HOH B 24 624 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . F 4 69.584 63.7 36.024 1 110.22 ? PG ANP 502 A 1 
HETATM 2 O O1G ANP . . . F 4 69.782 63.367 34.605 1 112.43 ? O1G ANP 502 A 1 
HETATM 3 O O2G ANP . . . F 4 70.847 64.089 36.664 1 111.81 ? O2G ANP 502 A 1 
HETATM 4 O O3G ANP . . . F 4 68.737 62.742 36.708 1 111.21 ? O3G ANP 502 A 1 
HETATM 5 P PB ANP . . . F 4 68.632 66.091 34.58 1 54.53 ? PB ANP 502 A 1 
HETATM 6 O O1B ANP . . . F 4 68.467 65.202 33.427 1 52.49 ? O1B ANP 502 A 1 
HETATM 7 O O2B ANP . . . F 4 67.65 67.155 34.751 1 52.86 ? O2B ANP 502 A 1 
HETATM 8 N N3B ANP . . . F 4 68.593 65.082 35.963 1 99.32 ? N3B ANP 502 A 1 
HETATM 9 P PA ANP . . . F 4 71.094 66.505 33.644 1 51.93 ? PA ANP 502 A 1 
HETATM 10 O O1A ANP . . . F 4 70.991 65.107 33.181 1 50.12 ? O1A ANP 502 A 1 
HETATM 11 O O2A ANP . . . F 4 72.357 67.09 34.059 1 49.32 ? O2A ANP 502 A 1 
HETATM 12 O O3A ANP . . . F 4 69.978 66.849 34.627 1 51.36 ? O3A ANP 502 A 1 
HETATM 13 O O5' ANP . . . F 4 70.57 67.47 32.535 1 65.84 ? O5' ANP 502 A 1 
HETATM 14 C C5' ANP . . . F 4 70.862 68.845 32.648 1 64.25 ? C5' ANP 502 A 1 
HETATM 15 C C4' ANP . . . F 4 69.717 69.738 32.24 1 66.04 ? C4' ANP 502 A 1 
HETATM 16 O O4' ANP . . . F 4 70.094 70.42 31.063 1 67.71 ? O4' ANP 502 A 1 
HETATM 17 C C3' ANP . . . F 4 68.441 69.021 31.931 1 67.23 ? C3' ANP 502 A 1 
HETATM 18 O O3' ANP . . . F 4 67.475 69.376 32.887 1 67.7 ? O3' ANP 502 A 1 
HETATM 19 C C2' ANP . . . F 4 67.963 69.588 30.634 1 67.85 ? C2' ANP 502 A 1 
HETATM 20 O O2' ANP . . . F 4 66.998 70.584 30.88 1 67.28 ? O2' ANP 502 A 1 
HETATM 21 C C1' ANP . . . F 4 69.141 70.277 30.036 1 67.98 ? C1' ANP 502 A 1 
HETATM 22 N N9 ANP . . . F 4 69.685 69.397 28.997 1 67.05 ? N9 ANP 502 A 1 
HETATM 23 C C8 ANP . . . F 4 70.645 68.513 29.164 1 65.63 ? C8 ANP 502 A 1 
HETATM 24 N N7 ANP . . . F 4 70.926 67.856 28.04 1 65.57 ? N7 ANP 502 A 1 
HETATM 25 C C5 ANP . . . F 4 70.125 68.348 27.101 1 66.87 ? C5 ANP 502 A 1 
HETATM 26 C C6 ANP . . . F 4 69.905 68.108 25.672 1 65.27 ? C6 ANP 502 A 1 
HETATM 27 N N6 ANP . . . F 4 70.583 67.196 24.966 1 62.96 ? N6 ANP 502 A 1 
HETATM 28 N N1 ANP . . . F 4 68.978 68.826 25.077 1 66.66 ? N1 ANP 502 A 1 
HETATM 29 C C2 ANP . . . F 4 68.267 69.738 25.724 1 68.02 ? C2 ANP 502 A 1 
HETATM 30 N N3 ANP . . . F 4 68.409 70.022 27.006 1 68.35 ? N3 ANP 502 A 1 
HETATM 31 C C4 ANP . . . F 4 69.307 69.36 27.743 1 68 ? C4 ANP 502 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#