data_5IX7 # _model_server_result.job_id rYt8g1KvtrwDUx0JyQGbmQ _model_server_result.datetime_utc '2024-11-17 02:28:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ix7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":105}' # _entry.id 5IX7 # _exptl.entry_id 5IX7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 107.868 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SILVER ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5IX7 _cell.length_a 30.15 _cell.length_b 30.15 _cell.length_c 118.42 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IX7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 19.736667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DT 5 A DT 5 1_555 A P CBR 6 A CBR 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? covale ? covale2 A O3' CBR 6 A CBR 6 1_555 A P DG 7 A DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? metalc ? metalc1 A N7 DG 1 A DG 1 1_555 G AG AG . A AG 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc2 A N7 DG 1 A DG 1 1_555 G AG AG . A AG 106 12_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc3 A N1 DG 2 A DG 2 1_555 F AG AG . A AG 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc4 A N3 DC 4 A DC 4 1_555 E AG AG . A AG 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc5 A O2 DC 4 A DC 4 1_555 I K K . A K 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? metalc ? metalc6 A N3 DT 5 A DT 5 1_555 D AG AG . A AG 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc7 A O2 DT 5 A DT 5 1_555 I K K . A K 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc8 A N3 CBR 6 A CBR 6 1_555 C AG AG . A AG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc9 A O2 CBR 6 A CBR 6 1_555 H K K . A K 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc10 A N7 DG 7 A DG 7 1_555 B AG AG . A AG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc11 A N7 DG 7 A DG 7 1_555 B AG AG . A AG 101 12_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc12 A N3 DC 9 A DC 9 1_555 C AG AG . A AG 102 12_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc13 A O2 DC 9 A DC 9 1_555 H K K . A K 107 12_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc14 A N3 DT 10 A DT 10 1_555 D AG AG . A AG 103 12_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc15 A O4' DT 10 A DT 10 1_555 H K K . A K 107 12_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.873 ? metalc ? metalc16 A O2 DT 10 A DT 10 1_555 H K K . A K 107 12_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.865 ? metalc ? metalc17 A N3 DC 11 A DC 11 1_555 E AG AG . A AG 104 12_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc18 A O2 DC 11 A DC 11 1_555 I K K . A K 108 12_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc19 A N3 DC 12 A DC 12 1_555 F AG AG . A AG 105 12_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc20 H K K . A K 107 1_555 J O HOH . A HOH 229 8_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc21 H K K . A K 107 1_555 J O HOH . A HOH 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc22 I K K . A K 108 1_555 J O HOH . A HOH 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? hydrog 'DG-DC PAIR' hydrog1 A O6 DG 1 A DG 1 1_555 A N4 DC 12 A DC 12 12_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog2 A O6 DG 2 A DG 2 1_555 A N4 DC 11 A DC 11 12_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog3 A N2 DG 2 A DG 2 1_555 A O2 DC 12 A DC 12 12_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DT MISPAIR' hydrog4 A N4 DC 4 A DC 4 1_555 A O4 DT 10 A DT 10 12_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DC MISPAIR' hydrog5 A O4 DT 5 A DT 5 1_555 A N4 DC 9 A DC 9 12_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'CBR-DG MISPAIR' hydrog6 A N4 CBR 6 A CBR 6 1_555 A O6 DG 7 A DG 7 12_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-CBR MISPAIR' hydrog7 A O6 DG 7 A DG 7 1_555 A N4 CBR 6 A CBR 6 12_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DT MISPAIR' hydrog8 A N4 DC 9 A DC 9 1_555 A O4 DT 5 A DT 5 12_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DC MISPAIR' hydrog9 A O4 DT 10 A DT 10 1_555 A N4 DC 4 A DC 4 12_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog10 A N4 DC 11 A DC 11 1_555 A O6 DG 2 A DG 2 12_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog11 A N4 DC 12 A DC 12 1_555 A O6 DG 1 A DG 1 12_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog12 A O2 DC 12 A DC 12 1_555 A N2 DG 2 A DG 2 12_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Ag 1' _chem_comp.formula_weight 107.868 _chem_comp.id AG _chem_comp.mon_nstd_flag . _chem_comp.name 'SILVER ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5IX7 _atom_sites.fract_transf_matrix[1][1] 0.033167 _atom_sites.fract_transf_matrix[1][2] 0.019149 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.038299 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008445 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AG A 1 101 51 AG AG . C 2 AG A 1 102 52 AG AG . D 2 AG A 1 103 53 AG AG . E 2 AG A 1 104 54 AG AG . F 2 AG A 1 105 55 AG AG . G 2 AG A 1 106 56 AG AG . H 3 K A 1 107 61 K K . I 3 K A 1 108 62 K K . J 4 HOH A 1 201 101 HOH HOH . J 4 HOH A 2 202 212 HOH HOH . J 4 HOH A 3 203 139 HOH HOH . J 4 HOH A 4 204 103 HOH HOH . J 4 HOH A 5 205 110 HOH HOH . J 4 HOH A 6 206 157 HOH HOH . J 4 HOH A 7 207 188 HOH HOH . J 4 HOH A 8 208 175 HOH HOH . J 4 HOH A 9 209 131 HOH HOH . J 4 HOH A 10 210 191 HOH HOH . J 4 HOH A 11 211 102 HOH HOH . J 4 HOH A 12 212 164 HOH HOH . J 4 HOH A 13 213 128 HOH HOH . J 4 HOH A 14 214 221 HOH HOH . J 4 HOH A 15 215 275 HOH HOH . J 4 HOH A 16 216 155 HOH HOH . J 4 HOH A 17 217 105 HOH HOH . J 4 HOH A 18 218 126 HOH HOH . J 4 HOH A 19 219 192 HOH HOH . J 4 HOH A 20 220 107 HOH HOH . J 4 HOH A 21 221 108 HOH HOH . J 4 HOH A 22 222 122 HOH HOH . J 4 HOH A 23 223 129 HOH HOH . J 4 HOH A 24 224 130 HOH HOH . J 4 HOH A 25 225 104 HOH HOH . J 4 HOH A 26 226 133 HOH HOH . J 4 HOH A 27 227 163 HOH HOH . J 4 HOH A 28 228 135 HOH HOH . J 4 HOH A 29 229 106 HOH HOH . J 4 HOH A 30 230 109 HOH HOH . J 4 HOH A 31 231 111 HOH HOH . J 4 HOH A 32 232 119 HOH HOH . J 4 HOH A 33 233 174 HOH HOH . J 4 HOH A 34 234 138 HOH HOH . J 4 HOH A 35 235 158 HOH HOH . J 4 HOH A 36 236 273 HOH HOH . J 4 HOH A 37 237 214 HOH HOH . J 4 HOH A 38 238 153 HOH HOH . J 4 HOH A 39 239 137 HOH HOH . J 4 HOH A 40 240 242 HOH HOH . J 4 HOH A 41 241 125 HOH HOH . J 4 HOH A 42 242 140 HOH HOH . J 4 HOH A 43 243 190 HOH HOH . J 4 HOH A 44 244 181 HOH HOH . J 4 HOH A 45 245 143 HOH HOH . J 4 HOH A 46 246 238 HOH HOH . J 4 HOH A 47 247 136 HOH HOH . J 4 HOH A 48 248 114 HOH HOH . J 4 HOH A 49 249 161 HOH HOH . J 4 HOH A 50 250 134 HOH HOH . J 4 HOH A 51 251 146 HOH HOH . J 4 HOH A 52 252 149 HOH HOH . J 4 HOH A 53 253 144 HOH HOH . J 4 HOH A 54 254 116 HOH HOH . J 4 HOH A 55 255 132 HOH HOH . J 4 HOH A 56 256 243 HOH HOH . J 4 HOH A 57 257 117 HOH HOH . J 4 HOH A 58 258 118 HOH HOH . J 4 HOH A 59 259 178 HOH HOH . J 4 HOH A 60 260 169 HOH HOH . J 4 HOH A 61 261 196 HOH HOH . J 4 HOH A 62 262 177 HOH HOH . J 4 HOH A 63 263 219 HOH HOH . J 4 HOH A 64 264 172 HOH HOH . J 4 HOH A 65 265 165 HOH HOH . J 4 HOH A 66 266 274 HOH HOH . J 4 HOH A 67 267 113 HOH HOH . J 4 HOH A 68 268 120 HOH HOH . J 4 HOH A 69 269 115 HOH HOH . J 4 HOH A 70 270 235 HOH HOH . J 4 HOH A 71 271 127 HOH HOH . J 4 HOH A 72 272 222 HOH HOH . J 4 HOH A 73 273 241 HOH HOH . J 4 HOH A 74 274 167 HOH HOH . J 4 HOH A 75 275 218 HOH HOH . J 4 HOH A 76 276 270 HOH HOH . J 4 HOH A 77 277 262 HOH HOH . J 4 HOH A 78 278 248 HOH HOH . J 4 HOH A 79 279 227 HOH HOH . J 4 HOH A 80 280 260 HOH HOH . J 4 HOH A 81 281 230 HOH HOH . J 4 HOH A 82 282 228 HOH HOH . J 4 HOH A 83 283 259 HOH HOH . J 4 HOH A 84 284 232 HOH HOH . J 4 HOH A 85 285 203 HOH HOH . J 4 HOH A 86 286 231 HOH HOH . J 4 HOH A 87 287 234 HOH HOH . J 4 HOH A 88 288 200 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol AG _atom_site.label_atom_id AG _atom_site.label_comp_id AG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 11.39 _atom_site.Cartn_y 20.839 _atom_site.Cartn_z 9.251 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.42 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id AG _atom_site.auth_comp_id AG _atom_site.auth_seq_id 105 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #