data_5IXB # _model_server_result.job_id 90Xiuyv5D63R1tzhCadKAw _model_server_result.datetime_utc '2024-11-19 17:43:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ixb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 5IXB # _exptl.entry_id 5IXB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 95.103 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PYRIMIDIN-2-AMINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IXB _cell.length_a 47.44 _cell.length_b 47.48 _cell.length_c 87.49 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IXB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 13 A CYS 12 1_555 A SG CYS 18 A CYS 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 A SG CYS 36 A CYS 35 1_555 A SG CYS 107 A CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? disulf ? disulf3 B SG CYS 13 B CYS 12 1_555 B SG CYS 18 B CYS 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 B SG CYS 36 B CYS 35 1_555 B SG CYS 107 B CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? # _chem_comp.formula 'C4 H5 N3' _chem_comp.formula_weight 95.103 _chem_comp.id LGA _chem_comp.mon_nstd_flag . _chem_comp.name PYRIMIDIN-2-AMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C1 LGA sing 184 n n C1 N1 LGA sing 185 n y C1 N7 LGA doub 186 n y N1 C4 LGA doub 187 n y C4 C5 LGA sing 188 n y C5 C3 LGA doub 189 n y C3 N7 LGA sing 190 n y N2 H2N1 LGA sing 191 n n N2 H2N2 LGA sing 192 n n C4 H4 LGA sing 193 n n C5 H5 LGA sing 194 n n C3 H3 LGA sing 195 n n # _atom_sites.entry_id 5IXB _atom_sites.fract_transf_matrix[1][1] 0.021079 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021061 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01143 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LGA A 1 201 1 LGA LGA . D 3 ACT A 1 202 1 ACT ACT . E 2 LGA B 1 201 2 LGA LGA . F 3 ACT B 1 202 2 ACT ACT . G 4 HOH A 1 301 187 HOH HOH . G 4 HOH A 2 302 75 HOH HOH . G 4 HOH A 3 303 121 HOH HOH . G 4 HOH A 4 304 202 HOH HOH . G 4 HOH A 5 305 191 HOH HOH . G 4 HOH A 6 306 152 HOH HOH . G 4 HOH A 7 307 153 HOH HOH . G 4 HOH A 8 308 162 HOH HOH . G 4 HOH A 9 309 185 HOH HOH . G 4 HOH A 10 310 160 HOH HOH . G 4 HOH A 11 311 167 HOH HOH . G 4 HOH A 12 312 196 HOH HOH . G 4 HOH A 13 313 188 HOH HOH . G 4 HOH A 14 314 125 HOH HOH . G 4 HOH A 15 315 90 HOH HOH . G 4 HOH A 16 316 49 HOH HOH . G 4 HOH A 17 317 101 HOH HOH . G 4 HOH A 18 318 256 HOH HOH . G 4 HOH A 19 319 134 HOH HOH . G 4 HOH A 20 320 45 HOH HOH . G 4 HOH A 21 321 15 HOH HOH . G 4 HOH A 22 322 98 HOH HOH . G 4 HOH A 23 323 81 HOH HOH . G 4 HOH A 24 324 14 HOH HOH . G 4 HOH A 25 325 60 HOH HOH . G 4 HOH A 26 326 157 HOH HOH . G 4 HOH A 27 327 82 HOH HOH . G 4 HOH A 28 328 37 HOH HOH . G 4 HOH A 29 329 54 HOH HOH . G 4 HOH A 30 330 25 HOH HOH . G 4 HOH A 31 331 109 HOH HOH . G 4 HOH A 32 332 58 HOH HOH . G 4 HOH A 33 333 39 HOH HOH . G 4 HOH A 34 334 9 HOH HOH . G 4 HOH A 35 335 17 HOH HOH . G 4 HOH A 36 336 230 HOH HOH . G 4 HOH A 37 337 200 HOH HOH . G 4 HOH A 38 338 164 HOH HOH . G 4 HOH A 39 339 40 HOH HOH . G 4 HOH A 40 340 4 HOH HOH . G 4 HOH A 41 341 107 HOH HOH . G 4 HOH A 42 342 63 HOH HOH . G 4 HOH A 43 343 11 HOH HOH . G 4 HOH A 44 344 259 HOH HOH . G 4 HOH A 45 345 30 HOH HOH . G 4 HOH A 46 346 52 HOH HOH . G 4 HOH A 47 347 73 HOH HOH . G 4 HOH A 48 348 146 HOH HOH . G 4 HOH A 49 349 2 HOH HOH . G 4 HOH A 50 350 36 HOH HOH . G 4 HOH A 51 351 6 HOH HOH . G 4 HOH A 52 352 76 HOH HOH . G 4 HOH A 53 353 23 HOH HOH . G 4 HOH A 54 354 165 HOH HOH . G 4 HOH A 55 355 22 HOH HOH . G 4 HOH A 56 356 184 HOH HOH . G 4 HOH A 57 357 65 HOH HOH . G 4 HOH A 58 358 103 HOH HOH . G 4 HOH A 59 359 41 HOH HOH . G 4 HOH A 60 360 158 HOH HOH . G 4 HOH A 61 361 170 HOH HOH . G 4 HOH A 62 362 77 HOH HOH . G 4 HOH A 63 363 176 HOH HOH . G 4 HOH A 64 364 100 HOH HOH . G 4 HOH A 65 365 27 HOH HOH . G 4 HOH A 66 366 106 HOH HOH . G 4 HOH A 67 367 205 HOH HOH . G 4 HOH A 68 368 88 HOH HOH . G 4 HOH A 69 369 1 HOH HOH . G 4 HOH A 70 370 128 HOH HOH . G 4 HOH A 71 371 136 HOH HOH . G 4 HOH A 72 372 8 HOH HOH . G 4 HOH A 73 373 231 HOH HOH . G 4 HOH A 74 374 190 HOH HOH . G 4 HOH A 75 375 92 HOH HOH . G 4 HOH A 76 376 204 HOH HOH . G 4 HOH A 77 377 84 HOH HOH . G 4 HOH A 78 378 68 HOH HOH . G 4 HOH A 79 379 147 HOH HOH . G 4 HOH A 80 380 181 HOH HOH . G 4 HOH A 81 381 203 HOH HOH . G 4 HOH A 82 382 197 HOH HOH . G 4 HOH A 83 383 226 HOH HOH . G 4 HOH A 84 384 260 HOH HOH . G 4 HOH A 85 385 69 HOH HOH . G 4 HOH A 86 386 186 HOH HOH . G 4 HOH A 87 387 57 HOH HOH . G 4 HOH A 88 388 168 HOH HOH . G 4 HOH A 89 389 166 HOH HOH . G 4 HOH A 90 390 262 HOH HOH . G 4 HOH A 91 391 61 HOH HOH . G 4 HOH A 92 392 178 HOH HOH . G 4 HOH A 93 393 26 HOH HOH . G 4 HOH A 94 394 206 HOH HOH . G 4 HOH A 95 395 145 HOH HOH . G 4 HOH A 96 396 179 HOH HOH . G 4 HOH A 97 397 169 HOH HOH . G 4 HOH A 98 398 254 HOH HOH . G 4 HOH A 99 399 150 HOH HOH . G 4 HOH A 100 400 229 HOH HOH . G 4 HOH A 101 401 225 HOH HOH . G 4 HOH A 102 402 243 HOH HOH . G 4 HOH A 103 403 193 HOH HOH . G 4 HOH A 104 404 144 HOH HOH . G 4 HOH A 105 405 183 HOH HOH . G 4 HOH A 106 406 242 HOH HOH . G 4 HOH A 107 407 151 HOH HOH . G 4 HOH A 108 408 16 HOH HOH . G 4 HOH A 109 409 180 HOH HOH . G 4 HOH A 110 410 177 HOH HOH . G 4 HOH A 111 411 126 HOH HOH . G 4 HOH A 112 412 189 HOH HOH . G 4 HOH A 113 413 215 HOH HOH . G 4 HOH A 114 414 235 HOH HOH . G 4 HOH A 115 415 228 HOH HOH . G 4 HOH A 116 416 46 HOH HOH . G 4 HOH A 117 417 163 HOH HOH . G 4 HOH A 118 418 192 HOH HOH . G 4 HOH A 119 419 156 HOH HOH . G 4 HOH A 120 420 182 HOH HOH . G 4 HOH A 121 421 51 HOH HOH . G 4 HOH A 122 422 95 HOH HOH . G 4 HOH A 123 423 127 HOH HOH . G 4 HOH A 124 424 33 HOH HOH . G 4 HOH A 125 425 221 HOH HOH . G 4 HOH A 126 426 135 HOH HOH . G 4 HOH A 127 427 194 HOH HOH . G 4 HOH A 128 428 159 HOH HOH . G 4 HOH A 129 429 96 HOH HOH . G 4 HOH A 130 430 87 HOH HOH . G 4 HOH A 131 431 175 HOH HOH . G 4 HOH A 132 432 214 HOH HOH . G 4 HOH A 133 433 70 HOH HOH . G 4 HOH A 134 434 112 HOH HOH . G 4 HOH A 135 435 195 HOH HOH . H 4 HOH B 1 301 201 HOH HOH . H 4 HOH B 2 302 137 HOH HOH . H 4 HOH B 3 303 161 HOH HOH . H 4 HOH B 4 304 250 HOH HOH . H 4 HOH B 5 305 208 HOH HOH . H 4 HOH B 6 306 257 HOH HOH . H 4 HOH B 7 307 138 HOH HOH . H 4 HOH B 8 308 199 HOH HOH . H 4 HOH B 9 309 255 HOH HOH . H 4 HOH B 10 310 219 HOH HOH . H 4 HOH B 11 311 91 HOH HOH . H 4 HOH B 12 312 130 HOH HOH . H 4 HOH B 13 313 102 HOH HOH . H 4 HOH B 14 314 99 HOH HOH . H 4 HOH B 15 315 80 HOH HOH . H 4 HOH B 16 316 7 HOH HOH . H 4 HOH B 17 317 21 HOH HOH . H 4 HOH B 18 318 38 HOH HOH . H 4 HOH B 19 319 83 HOH HOH . H 4 HOH B 20 320 122 HOH HOH . H 4 HOH B 21 321 44 HOH HOH . H 4 HOH B 22 322 110 HOH HOH . H 4 HOH B 23 323 154 HOH HOH . H 4 HOH B 24 324 48 HOH HOH . H 4 HOH B 25 325 28 HOH HOH . H 4 HOH B 26 326 245 HOH HOH . H 4 HOH B 27 327 32 HOH HOH . H 4 HOH B 28 328 55 HOH HOH . H 4 HOH B 29 329 258 HOH HOH . H 4 HOH B 30 330 19 HOH HOH . H 4 HOH B 31 331 31 HOH HOH . H 4 HOH B 32 332 64 HOH HOH . H 4 HOH B 33 333 123 HOH HOH . H 4 HOH B 34 334 261 HOH HOH . H 4 HOH B 35 335 218 HOH HOH . H 4 HOH B 36 336 10 HOH HOH . H 4 HOH B 37 337 115 HOH HOH . H 4 HOH B 38 338 43 HOH HOH . H 4 HOH B 39 339 72 HOH HOH . H 4 HOH B 40 340 29 HOH HOH . H 4 HOH B 41 341 12 HOH HOH . H 4 HOH B 42 342 120 HOH HOH . H 4 HOH B 43 343 108 HOH HOH . H 4 HOH B 44 344 53 HOH HOH . H 4 HOH B 45 345 74 HOH HOH . H 4 HOH B 46 346 149 HOH HOH . H 4 HOH B 47 347 24 HOH HOH . H 4 HOH B 48 348 18 HOH HOH . H 4 HOH B 49 349 66 HOH HOH . H 4 HOH B 50 350 79 HOH HOH . H 4 HOH B 51 351 59 HOH HOH . H 4 HOH B 52 352 13 HOH HOH . H 4 HOH B 53 353 234 HOH HOH . H 4 HOH B 54 354 171 HOH HOH . H 4 HOH B 55 355 104 HOH HOH . H 4 HOH B 56 356 78 HOH HOH . H 4 HOH B 57 357 249 HOH HOH . H 4 HOH B 58 358 42 HOH HOH . H 4 HOH B 59 359 93 HOH HOH . H 4 HOH B 60 360 247 HOH HOH . H 4 HOH B 61 361 114 HOH HOH . H 4 HOH B 62 362 129 HOH HOH . H 4 HOH B 63 363 105 HOH HOH . H 4 HOH B 64 364 133 HOH HOH . H 4 HOH B 65 365 240 HOH HOH . H 4 HOH B 66 366 5 HOH HOH . H 4 HOH B 67 367 246 HOH HOH . H 4 HOH B 68 368 232 HOH HOH . H 4 HOH B 69 369 85 HOH HOH . H 4 HOH B 70 370 89 HOH HOH . H 4 HOH B 71 371 223 HOH HOH . H 4 HOH B 72 372 209 HOH HOH . H 4 HOH B 73 373 233 HOH HOH . H 4 HOH B 74 374 67 HOH HOH . H 4 HOH B 75 375 3 HOH HOH . H 4 HOH B 76 376 220 HOH HOH . H 4 HOH B 77 377 119 HOH HOH . H 4 HOH B 78 378 35 HOH HOH . H 4 HOH B 79 379 173 HOH HOH . H 4 HOH B 80 380 56 HOH HOH . H 4 HOH B 81 381 118 HOH HOH . H 4 HOH B 82 382 264 HOH HOH . H 4 HOH B 83 383 62 HOH HOH . H 4 HOH B 84 384 244 HOH HOH . H 4 HOH B 85 385 227 HOH HOH . H 4 HOH B 86 386 139 HOH HOH . H 4 HOH B 87 387 252 HOH HOH . H 4 HOH B 88 388 141 HOH HOH . H 4 HOH B 89 389 207 HOH HOH . H 4 HOH B 90 390 140 HOH HOH . H 4 HOH B 91 391 172 HOH HOH . H 4 HOH B 92 392 253 HOH HOH . H 4 HOH B 93 393 142 HOH HOH . H 4 HOH B 94 394 224 HOH HOH . H 4 HOH B 95 395 263 HOH HOH . H 4 HOH B 96 396 148 HOH HOH . H 4 HOH B 97 397 116 HOH HOH . H 4 HOH B 98 398 241 HOH HOH . H 4 HOH B 99 399 198 HOH HOH . H 4 HOH B 100 400 212 HOH HOH . H 4 HOH B 101 401 143 HOH HOH . H 4 HOH B 102 402 131 HOH HOH . H 4 HOH B 103 403 237 HOH HOH . H 4 HOH B 104 404 265 HOH HOH . H 4 HOH B 105 405 251 HOH HOH . H 4 HOH B 106 406 236 HOH HOH . H 4 HOH B 107 407 20 HOH HOH . H 4 HOH B 108 408 216 HOH HOH . H 4 HOH B 109 409 210 HOH HOH . H 4 HOH B 110 410 117 HOH HOH . H 4 HOH B 111 411 47 HOH HOH . H 4 HOH B 112 412 239 HOH HOH . H 4 HOH B 113 413 174 HOH HOH . H 4 HOH B 114 414 211 HOH HOH . H 4 HOH B 115 415 155 HOH HOH . H 4 HOH B 116 416 132 HOH HOH . H 4 HOH B 117 417 94 HOH HOH . H 4 HOH B 118 418 238 HOH HOH . H 4 HOH B 119 419 50 HOH HOH . H 4 HOH B 120 420 34 HOH HOH . H 4 HOH B 121 421 217 HOH HOH . H 4 HOH B 122 422 111 HOH HOH . H 4 HOH B 123 423 222 HOH HOH . H 4 HOH B 124 424 124 HOH HOH . H 4 HOH B 125 425 97 HOH HOH . H 4 HOH B 126 426 213 HOH HOH . H 4 HOH B 127 427 86 HOH HOH . H 4 HOH B 128 428 248 HOH HOH . H 4 HOH B 129 429 71 HOH HOH . H 4 HOH B 130 430 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 LGA . . . E 2 -4.241 -22.84 49.728 0.73 28.4 ? N2 LGA 201 B 1 HETATM 2 C C1 LGA . . . E 2 -2.894 -22.849 49.226 0.73 20.79 ? C1 LGA 201 B 1 HETATM 3 N N1 LGA . . . E 2 -2.619 -22.143 48.134 0.73 19.36 ? N1 LGA 201 B 1 HETATM 4 C C4 LGA . . . E 2 -1.39 -22.135 47.639 0.73 23.42 ? C4 LGA 201 B 1 HETATM 5 C C5 LGA . . . E 2 -0.412 -22.833 48.278 0.73 22.09 ? C5 LGA 201 B 1 HETATM 6 C C3 LGA . . . E 2 -0.708 -23.544 49.392 0.73 20.21 ? C3 LGA 201 B 1 HETATM 7 N N7 LGA . . . E 2 -1.949 -23.56 49.872 0.73 21.43 ? N7 LGA 201 B 1 HETATM 8 H H2N1 LGA . . . E 2 -4.904 -22.855 49.181 0.73 34.08 ? H2N1 LGA 201 B 1 HETATM 9 H H2N2 LGA . . . E 2 -4.384 -22.819 50.576 0.73 34.08 ? H2N2 LGA 201 B 1 HETATM 10 H H4 LGA . . . E 2 -1.193 -21.64 46.877 0.73 28.11 ? H4 LGA 201 B 1 HETATM 11 H H5 LGA . . . E 2 0.455 -22.832 47.942 0.73 26.51 ? H5 LGA 201 B 1 HETATM 12 H H3 LGA . . . E 2 -0.041 -24.028 49.822 0.73 24.25 ? H3 LGA 201 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 486 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #