data_5IXC
#
_model_server_result.job_id            QvbgHyGiNzXgffya9hOd0g 
_model_server_result.datetime_utc      '2024-11-05 00:34:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ixc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":901}' 
#
_entry.id    5IXC 
#
_exptl.entry_id    5IXC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              344.444 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'methyl (R)-(6Z,9Z,12Z)-octadeca-6,9,12-trien-1-ylphosphonofluoridate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5IXC 
_cell.length_a            100.567 
_cell.length_b            111.379 
_cell.length_c            157.645 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5IXC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 167 A CYS 163 1_555 A SG CYS 278 A CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
disulf ? disulf2 B SG CYS 167 B CYS 163 1_555 B SG CYS 278 B CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
covale ? covale1 A OG SER 365 A SER 361 1_555 C P1 7FA . A 7FA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 ? 
covale ? covale2 B OG SER 365 B SER 361 1_555 G P1 7FA . B 7FA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.591 ? 
metalc ? metalc1 A OG SER 45 A SER 41 1_555 E BA BA . A BA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.994 ? 
metalc ? metalc2 A O GLU 46 A GLU 42 1_555 E BA BA . A BA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? 
metalc ? metalc3 A OD1 ASP 48 A ASP 44 1_555 E BA BA . A BA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.936 ? 
metalc ? metalc4 A OD2 ASP 48 A ASP 44 1_555 E BA BA . A BA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.133 ? 
metalc ? metalc5 A OD1 ASP 70 A ASP 66 1_555 E BA BA . A BA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.438 ? 
metalc ? metalc6 A O ASP 100 A ASP 96 1_555 F BA BA . A BA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.198 ? 
metalc ? metalc7 A O THR 103 A THR 99 1_555 F BA BA . A BA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? 
metalc ? metalc8 A OD2 ASP 105 A ASP 101 1_555 F BA BA . A BA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.262 ? 
metalc ? metalc9 A OD2 ASP 169 A ASP 165 1_555 D BA BA . A BA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.056 ? 
metalc ? metalc10 A OD1 ASP 169 A ASP 165 1_555 H BA BA . B BA 902 3_547 ? ? ? ? ? ? ? ? ? ? ? ? 3.392 ? 
metalc ? metalc11 A OD2 ASP 169 A ASP 165 1_555 H BA BA . B BA 902 3_547 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? 
metalc ? metalc12 D BA BA . A BA 902 3_557 B OD2 ASP 169 B ASP 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? 
metalc ? metalc13 B OG SER 45 B SER 41 1_555 I BA BA . B BA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? 
metalc ? metalc14 B O GLU 46 B GLU 42 1_555 I BA BA . B BA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? 
metalc ? metalc15 B OD1 ASP 48 B ASP 44 1_555 I BA BA . B BA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.071 ? 
metalc ? metalc16 B OD2 ASP 48 B ASP 44 1_555 I BA BA . B BA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.23 ? 
metalc ? metalc17 B OD1 ASP 70 B ASP 66 1_555 I BA BA . B BA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.485 ? 
metalc ? metalc18 B O ASP 100 B ASP 96 1_555 J BA BA . B BA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? 
metalc ? metalc19 B O THR 103 B THR 99 1_555 J BA BA . B BA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? 
metalc ? metalc20 B OD2 ASP 105 B ASP 101 1_555 J BA BA . B BA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.201 ? 
metalc ? metalc21 B OD2 ASP 169 B ASP 165 1_555 H BA BA . B BA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? 
metalc ? metalc22 I BA BA . B BA 903 1_555 L O HOH . B HOH 1032 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? 
#
_chem_comp.formula           'C19 H34 F O2 P' 
_chem_comp.formula_weight    344.444 
_chem_comp.id                7FA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'methyl (R)-(6Z,9Z,12Z)-octadeca-6,9,12-trien-1-ylphosphonofluoridate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 7FA doub 1 n n 
O2 CM 7FA sing 2 n n 
O2 P1 7FA sing 3 n n 
P1 C1 7FA sing 4 n n 
C1 C2 7FA sing 5 n n 
C2 C3 7FA sing 6 n n 
C3 C4 7FA sing 7 n n 
C4 C5 7FA sing 8 n n 
C5 C6 7FA sing 9 n n 
C6 C7 7FA doub 10 z n 
C7 C8 7FA sing 11 n n 
C8 C9 7FA sing 12 n n 
C9 C10 7FA doub 13 z n 
C18 C17 7FA sing 14 n n 
C10 C11 7FA sing 15 n n 
C11 C12 7FA sing 16 n n 
C17 C16 7FA sing 17 n n 
C16 C15 7FA sing 18 n n 
C12 C13 7FA doub 19 z n 
C13 C14 7FA sing 20 n n 
C15 C14 7FA sing 21 n n 
P1 F1 7FA sing 22 n n 
C1 H1 7FA sing 23 n n 
C1 H2 7FA sing 24 n n 
C2 H3 7FA sing 25 n n 
C2 H4 7FA sing 26 n n 
C3 H5 7FA sing 27 n n 
C3 H6 7FA sing 28 n n 
C4 H7 7FA sing 29 n n 
C4 H8 7FA sing 30 n n 
C5 H9 7FA sing 31 n n 
C5 H10 7FA sing 32 n n 
C6 H11 7FA sing 33 n n 
C7 H12 7FA sing 34 n n 
C8 H13 7FA sing 35 n n 
C8 H14 7FA sing 36 n n 
C9 H15 7FA sing 37 n n 
CM H16 7FA sing 38 n n 
CM H17 7FA sing 39 n n 
CM H18 7FA sing 40 n n 
C10 H19 7FA sing 41 n n 
C11 H20 7FA sing 42 n n 
C11 H21 7FA sing 43 n n 
C12 H22 7FA sing 44 n n 
C13 H24 7FA sing 45 n n 
C14 H26 7FA sing 46 n n 
C14 H27 7FA sing 47 n n 
C15 H28 7FA sing 48 n n 
C15 H29 7FA sing 49 n n 
C16 H30 7FA sing 50 n n 
C16 H31 7FA sing 51 n n 
C17 H32 7FA sing 52 n n 
C17 H33 7FA sing 53 n n 
C18 H34 7FA sing 54 n n 
C18 H35 7FA sing 55 n n 
C18 H36 7FA sing 56 n n 
#
_atom_sites.entry_id                     5IXC 
_atom_sites.fract_transf_matrix[1][1]    0.009944 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008978 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006343 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 7FA A 1 901 999 7FA MLF . 
D 3 BA A 1 902 1000 BA BA . 
E 3 BA A 1 903 1001 BA BA . 
F 3 BA A 1 904 1002 BA BA . 
G 2 7FA B 1 901 999 7FA MLF . 
H 3 BA B 1 902 1000 BA BA . 
I 3 BA B 1 903 1001 BA BA . 
J 3 BA B 1 904 1002 BA BA . 
K 4 HOH A 1 1001 56 HOH HOH . 
K 4 HOH A 2 1002 60 HOH HOH . 
K 4 HOH A 3 1003 58 HOH HOH . 
K 4 HOH A 4 1004 59 HOH HOH . 
K 4 HOH A 5 1005 32 HOH HOH . 
K 4 HOH A 6 1006 54 HOH HOH . 
K 4 HOH A 7 1007 1 HOH HOH . 
K 4 HOH A 8 1008 55 HOH HOH . 
K 4 HOH A 9 1009 22 HOH HOH . 
K 4 HOH A 10 1010 33 HOH HOH . 
K 4 HOH A 11 1011 57 HOH HOH . 
K 4 HOH A 12 1012 34 HOH HOH . 
K 4 HOH A 13 1013 25 HOH HOH . 
K 4 HOH A 14 1014 63 HOH HOH . 
K 4 HOH A 15 1015 4 HOH HOH . 
K 4 HOH A 16 1016 35 HOH HOH . 
K 4 HOH A 17 1017 21 HOH HOH . 
K 4 HOH A 18 1018 15 HOH HOH . 
K 4 HOH A 19 1019 62 HOH HOH . 
K 4 HOH A 20 1020 73 HOH HOH . 
K 4 HOH A 21 1021 61 HOH HOH . 
K 4 HOH A 22 1022 72 HOH HOH . 
L 4 HOH B 1 1001 39 HOH HOH . 
L 4 HOH B 2 1002 11 HOH HOH . 
L 4 HOH B 3 1003 23 HOH HOH . 
L 4 HOH B 4 1004 19 HOH HOH . 
L 4 HOH B 5 1005 68 HOH HOH . 
L 4 HOH B 6 1006 18 HOH HOH . 
L 4 HOH B 7 1007 5 HOH HOH . 
L 4 HOH B 8 1008 47 HOH HOH . 
L 4 HOH B 9 1009 28 HOH HOH . 
L 4 HOH B 10 1010 38 HOH HOH . 
L 4 HOH B 11 1011 20 HOH HOH . 
L 4 HOH B 12 1012 2 HOH HOH . 
L 4 HOH B 13 1013 52 HOH HOH . 
L 4 HOH B 14 1014 45 HOH HOH . 
L 4 HOH B 15 1015 46 HOH HOH . 
L 4 HOH B 16 1016 43 HOH HOH . 
L 4 HOH B 17 1017 8 HOH HOH . 
L 4 HOH B 18 1018 49 HOH HOH . 
L 4 HOH B 19 1019 40 HOH HOH . 
L 4 HOH B 20 1020 3 HOH HOH . 
L 4 HOH B 21 1021 7 HOH HOH . 
L 4 HOH B 22 1022 31 HOH HOH . 
L 4 HOH B 23 1023 70 HOH HOH . 
L 4 HOH B 24 1024 67 HOH HOH . 
L 4 HOH B 25 1025 48 HOH HOH . 
L 4 HOH B 26 1026 16 HOH HOH . 
L 4 HOH B 27 1027 24 HOH HOH . 
L 4 HOH B 28 1028 44 HOH HOH . 
L 4 HOH B 29 1029 10 HOH HOH . 
L 4 HOH B 30 1030 53 HOH HOH . 
L 4 HOH B 31 1031 64 HOH HOH . 
L 4 HOH B 32 1032 30 HOH HOH . 
L 4 HOH B 33 1033 69 HOH HOH . 
L 4 HOH B 34 1034 37 HOH HOH . 
L 4 HOH B 35 1035 14 HOH HOH . 
L 4 HOH B 36 1036 66 HOH HOH . 
L 4 HOH B 37 1037 6 HOH HOH . 
L 4 HOH B 38 1038 50 HOH HOH . 
L 4 HOH B 39 1039 17 HOH HOH . 
L 4 HOH B 40 1040 26 HOH HOH . 
L 4 HOH B 41 1041 36 HOH HOH . 
L 4 HOH B 42 1042 71 HOH HOH . 
L 4 HOH B 43 1043 9 HOH HOH . 
L 4 HOH B 44 1044 51 HOH HOH . 
L 4 HOH B 45 1045 12 HOH HOH . 
L 4 HOH B 46 1046 42 HOH HOH . 
L 4 HOH B 47 1047 65 HOH HOH . 
L 4 HOH B 48 1048 41 HOH HOH . 
L 4 HOH B 49 1049 27 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 7FA . . . C 2 35.674 36.028 170.018 1 45.39 ? C1 7FA 901 A 1 
HETATM 2 P P1 7FA . . . C 2 35.918 34.24 169.888 1 43.16 ? P1 7FA 901 A 1 
HETATM 3 C C2 7FA . . . C 2 36.948 36.826 169.758 1 45.74 ? C2 7FA 901 A 1 
HETATM 4 O O2 7FA . . . C 2 36.628 33.728 171.222 1 47.2 ? O2 7FA 901 A 1 
HETATM 5 C C3 7FA . . . C 2 36.621 38.27 170.107 1 48.46 ? C3 7FA 901 A 1 
HETATM 6 C C4 7FA . . . C 2 37.742 39.284 169.874 1 53.01 ? C4 7FA 901 A 1 
HETATM 7 C C5 7FA . . . C 2 37.092 40.652 170.042 1 58.39 ? C5 7FA 901 A 1 
HETATM 8 C C6 7FA . . . C 2 38.027 41.835 170.133 1 64.23 ? C6 7FA 901 A 1 
HETATM 9 C C7 7FA . . . C 2 37.596 42.866 170.87 1 71.72 ? C7 7FA 901 A 1 
HETATM 10 C C8 7FA . . . C 2 38.387 44.139 171.073 1 81.02 ? C8 7FA 901 A 1 
HETATM 11 C C9 7FA . . . C 2 37.437 45.159 171.666 1 83.58 ? C9 7FA 901 A 1 
HETATM 12 C CM 7FA . . . C 2 37.846 33.008 171.156 1 51.45 ? CM 7FA 901 A 1 
HETATM 13 C C10 7FA . . . C 2 37.235 45.198 172.985 1 86.64 ? C10 7FA 901 A 1 
HETATM 14 C C11 7FA . . . C 2 36.263 46.194 173.566 1 87.68 ? C11 7FA 901 A 1 
HETATM 15 C C12 7FA . . . C 2 36.764 46.807 174.85 1 88.94 ? C12 7FA 901 A 1 
HETATM 16 C C13 7FA . . . C 2 36.097 46.625 175.987 1 90.4 ? C13 7FA 901 A 1 
HETATM 17 C C14 7FA . . . C 2 36.62 47.252 177.258 1 96.56 ? C14 7FA 901 A 1 
HETATM 18 C C15 7FA . . . C 2 37.8 46.474 177.838 1 97.13 ? C15 7FA 901 A 1 
HETATM 19 C C16 7FA . . . C 2 38.705 47.363 178.685 1 98.27 ? C16 7FA 901 A 1 
HETATM 20 C C17 7FA . . . C 2 37.998 47.845 179.95 1 101.16 ? C17 7FA 901 A 1 
HETATM 21 C C18 7FA . . . C 2 38.99 48.392 180.961 1 106.34 ? C18 7FA 901 A 1 
HETATM 22 O O1 7FA . . . C 2 36.633 33.837 168.673 1 43.37 ? O1 7FA 901 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           353 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           22 
#