data_5IXH # _model_server_result.job_id JwGfm8zD8mceXRFbG4UmQQ _model_server_result.datetime_utc '2024-11-05 04:36:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ixh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":204}' # _entry.id 5IXH # _exptl.entry_id 5IXH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5IXH _cell.length_a 93.97 _cell.length_b 93.97 _cell.length_c 76.66 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IXH _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1 B,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 J N N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 441 n n C C2 TRS sing 442 n n C C3 TRS sing 443 n n C N TRS sing 444 n n C1 O1 TRS sing 445 n n C1 H11 TRS sing 446 n n C1 H12 TRS sing 447 n n C2 O2 TRS sing 448 n n C2 H21 TRS sing 449 n n C2 H22 TRS sing 450 n n C3 O3 TRS sing 451 n n C3 H31 TRS sing 452 n n C3 H32 TRS sing 453 n n N HN1 TRS sing 454 n n N HN2 TRS sing 455 n n N HN3 TRS sing 456 n n O1 HO1 TRS sing 457 n n O2 HO2 TRS sing 458 n n O3 HO3 TRS sing 459 n n # _atom_sites.entry_id 5IXH _atom_sites.fract_transf_matrix[1][1] 0.010642 _atom_sites.fract_transf_matrix[1][2] 0.006144 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012288 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013045 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OTP A 1 201 164 OTP OTP . D 3 SO4 A 1 202 6 SO4 SO4 . E 3 SO4 A 1 203 8 SO4 SO4 . F 4 TRS A 1 204 1 TRS TRS . G 2 OTP B 1 201 165 OTP OTP . H 3 SO4 B 1 202 1 SO4 SO4 . I 3 SO4 B 1 203 7 SO4 SO4 . J 4 TRS B 1 204 2 TRS TRS . K 5 HOH A 1 301 564 HOH HOH . K 5 HOH A 2 302 610 HOH HOH . K 5 HOH A 3 303 523 HOH HOH . K 5 HOH A 4 304 604 HOH HOH . K 5 HOH A 5 305 439 HOH HOH . K 5 HOH A 6 306 449 HOH HOH . K 5 HOH A 7 307 502 HOH HOH . K 5 HOH A 8 308 22 HOH HOH . K 5 HOH A 9 309 332 HOH HOH . K 5 HOH A 10 310 403 HOH HOH . K 5 HOH A 11 311 482 HOH HOH . K 5 HOH A 12 312 412 HOH HOH . K 5 HOH A 13 313 471 HOH HOH . K 5 HOH A 14 314 418 HOH HOH . K 5 HOH A 15 315 275 HOH HOH . K 5 HOH A 16 316 499 HOH HOH . K 5 HOH A 17 317 484 HOH HOH . K 5 HOH A 18 318 417 HOH HOH . K 5 HOH A 19 319 554 HOH HOH . K 5 HOH A 20 320 14 HOH HOH . K 5 HOH A 21 321 530 HOH HOH . K 5 HOH A 22 322 431 HOH HOH . K 5 HOH A 23 323 607 HOH HOH . K 5 HOH A 24 324 49 HOH HOH . K 5 HOH A 25 325 478 HOH HOH . K 5 HOH A 26 326 5 HOH HOH . K 5 HOH A 27 327 432 HOH HOH . K 5 HOH A 28 328 401 HOH HOH . K 5 HOH A 29 329 347 HOH HOH . K 5 HOH A 30 330 519 HOH HOH . K 5 HOH A 31 331 544 HOH HOH . K 5 HOH A 32 332 513 HOH HOH . K 5 HOH A 33 333 81 HOH HOH . K 5 HOH A 34 334 249 HOH HOH . K 5 HOH A 35 335 276 HOH HOH . K 5 HOH A 36 336 18 HOH HOH . K 5 HOH A 37 337 479 HOH HOH . K 5 HOH A 38 338 463 HOH HOH . K 5 HOH A 39 339 267 HOH HOH . K 5 HOH A 40 340 421 HOH HOH . K 5 HOH A 41 341 424 HOH HOH . K 5 HOH A 42 342 475 HOH HOH . K 5 HOH A 43 343 398 HOH HOH . K 5 HOH A 44 344 495 HOH HOH . K 5 HOH A 45 345 328 HOH HOH . K 5 HOH A 46 346 41 HOH HOH . K 5 HOH A 47 347 410 HOH HOH . K 5 HOH A 48 348 437 HOH HOH . K 5 HOH A 49 349 1 HOH HOH . K 5 HOH A 50 350 351 HOH HOH . K 5 HOH A 51 351 577 HOH HOH . K 5 HOH A 52 352 25 HOH HOH . K 5 HOH A 53 353 2 HOH HOH . K 5 HOH A 54 354 433 HOH HOH . K 5 HOH A 55 355 30 HOH HOH . K 5 HOH A 56 356 370 HOH HOH . K 5 HOH A 57 357 517 HOH HOH . K 5 HOH A 58 358 466 HOH HOH . K 5 HOH A 59 359 472 HOH HOH . K 5 HOH A 60 360 26 HOH HOH . K 5 HOH A 61 361 56 HOH HOH . K 5 HOH A 62 362 114 HOH HOH . K 5 HOH A 63 363 506 HOH HOH . K 5 HOH A 64 364 33 HOH HOH . K 5 HOH A 65 365 298 HOH HOH . K 5 HOH A 66 366 326 HOH HOH . K 5 HOH A 67 367 312 HOH HOH . K 5 HOH A 68 368 430 HOH HOH . K 5 HOH A 69 369 23 HOH HOH . K 5 HOH A 70 370 79 HOH HOH . K 5 HOH A 71 371 263 HOH HOH . K 5 HOH A 72 372 491 HOH HOH . K 5 HOH A 73 373 462 HOH HOH . K 5 HOH A 74 374 510 HOH HOH . K 5 HOH A 75 375 4 HOH HOH . K 5 HOH A 76 376 507 HOH HOH . K 5 HOH A 77 377 485 HOH HOH . K 5 HOH A 78 378 426 HOH HOH . K 5 HOH A 79 379 250 HOH HOH . K 5 HOH A 80 380 553 HOH HOH . K 5 HOH A 81 381 58 HOH HOH . K 5 HOH A 82 382 319 HOH HOH . K 5 HOH A 83 383 349 HOH HOH . K 5 HOH A 84 384 508 HOH HOH . K 5 HOH A 85 385 541 HOH HOH . K 5 HOH A 86 386 465 HOH HOH . K 5 HOH A 87 387 608 HOH HOH . K 5 HOH A 88 388 268 HOH HOH . K 5 HOH A 89 389 601 HOH HOH . K 5 HOH A 90 390 420 HOH HOH . K 5 HOH A 91 391 451 HOH HOH . K 5 HOH A 92 392 609 HOH HOH . K 5 HOH A 93 393 373 HOH HOH . K 5 HOH A 94 394 109 HOH HOH . K 5 HOH A 95 395 533 HOH HOH . K 5 HOH A 96 396 524 HOH HOH . K 5 HOH A 97 397 320 HOH HOH . K 5 HOH A 98 398 578 HOH HOH . K 5 HOH A 99 399 271 HOH HOH . K 5 HOH A 100 400 498 HOH HOH . K 5 HOH A 101 401 599 HOH HOH . K 5 HOH A 102 402 442 HOH HOH . K 5 HOH A 103 403 565 HOH HOH . K 5 HOH A 104 404 321 HOH HOH . K 5 HOH A 105 405 536 HOH HOH . K 5 HOH A 106 406 582 HOH HOH . K 5 HOH A 107 407 391 HOH HOH . K 5 HOH A 108 408 546 HOH HOH . K 5 HOH A 109 409 539 HOH HOH . K 5 HOH A 110 410 369 HOH HOH . K 5 HOH A 111 411 527 HOH HOH . K 5 HOH A 112 412 393 HOH HOH . K 5 HOH A 113 413 490 HOH HOH . K 5 HOH A 114 414 255 HOH HOH . K 5 HOH A 115 415 334 HOH HOH . K 5 HOH A 116 416 545 HOH HOH . K 5 HOH A 117 417 583 HOH HOH . K 5 HOH A 118 418 558 HOH HOH . K 5 HOH A 119 419 528 HOH HOH . K 5 HOH A 120 420 459 HOH HOH . K 5 HOH A 121 421 372 HOH HOH . K 5 HOH A 122 422 473 HOH HOH . K 5 HOH A 123 423 316 HOH HOH . K 5 HOH A 124 424 453 HOH HOH . K 5 HOH A 125 425 586 HOH HOH . K 5 HOH A 126 426 384 HOH HOH . K 5 HOH A 127 427 440 HOH HOH . K 5 HOH A 128 428 340 HOH HOH . K 5 HOH A 129 429 363 HOH HOH . K 5 HOH A 130 430 77 HOH HOH . K 5 HOH A 131 431 441 HOH HOH . K 5 HOH A 132 432 259 HOH HOH . L 5 HOH B 1 301 461 HOH HOH . L 5 HOH B 2 302 587 HOH HOH . L 5 HOH B 3 303 534 HOH HOH . L 5 HOH B 4 304 454 HOH HOH . L 5 HOH B 5 305 457 HOH HOH . L 5 HOH B 6 306 516 HOH HOH . L 5 HOH B 7 307 550 HOH HOH . L 5 HOH B 8 308 600 HOH HOH . L 5 HOH B 9 309 256 HOH HOH . L 5 HOH B 10 310 567 HOH HOH . L 5 HOH B 11 311 537 HOH HOH . L 5 HOH B 12 312 501 HOH HOH . L 5 HOH B 13 313 452 HOH HOH . L 5 HOH B 14 314 496 HOH HOH . L 5 HOH B 15 315 450 HOH HOH . L 5 HOH B 16 316 581 HOH HOH . L 5 HOH B 17 317 487 HOH HOH . L 5 HOH B 18 318 493 HOH HOH . L 5 HOH B 19 319 438 HOH HOH . L 5 HOH B 20 320 394 HOH HOH . L 5 HOH B 21 321 10 HOH HOH . L 5 HOH B 22 322 422 HOH HOH . L 5 HOH B 23 323 415 HOH HOH . L 5 HOH B 24 324 358 HOH HOH . L 5 HOH B 25 325 380 HOH HOH . L 5 HOH B 26 326 486 HOH HOH . L 5 HOH B 27 327 425 HOH HOH . L 5 HOH B 28 328 573 HOH HOH . L 5 HOH B 29 329 400 HOH HOH . L 5 HOH B 30 330 348 HOH HOH . L 5 HOH B 31 331 97 HOH HOH . L 5 HOH B 32 332 42 HOH HOH . L 5 HOH B 33 333 562 HOH HOH . L 5 HOH B 34 334 428 HOH HOH . L 5 HOH B 35 335 477 HOH HOH . L 5 HOH B 36 336 500 HOH HOH . L 5 HOH B 37 337 62 HOH HOH . L 5 HOH B 38 338 469 HOH HOH . L 5 HOH B 39 339 112 HOH HOH . L 5 HOH B 40 340 467 HOH HOH . L 5 HOH B 41 341 488 HOH HOH . L 5 HOH B 42 342 9 HOH HOH . L 5 HOH B 43 343 548 HOH HOH . L 5 HOH B 44 344 8 HOH HOH . L 5 HOH B 45 345 31 HOH HOH . L 5 HOH B 46 346 535 HOH HOH . L 5 HOH B 47 347 300 HOH HOH . L 5 HOH B 48 348 497 HOH HOH . L 5 HOH B 49 349 543 HOH HOH . L 5 HOH B 50 350 476 HOH HOH . L 5 HOH B 51 351 560 HOH HOH . L 5 HOH B 52 352 73 HOH HOH . L 5 HOH B 53 353 92 HOH HOH . L 5 HOH B 54 354 74 HOH HOH . L 5 HOH B 55 355 378 HOH HOH . L 5 HOH B 56 356 540 HOH HOH . L 5 HOH B 57 357 552 HOH HOH . L 5 HOH B 58 358 526 HOH HOH . L 5 HOH B 59 359 3 HOH HOH . L 5 HOH B 60 360 455 HOH HOH . L 5 HOH B 61 361 72 HOH HOH . L 5 HOH B 62 362 381 HOH HOH . L 5 HOH B 63 363 514 HOH HOH . L 5 HOH B 64 364 474 HOH HOH . L 5 HOH B 65 365 423 HOH HOH . L 5 HOH B 66 366 518 HOH HOH . L 5 HOH B 67 367 464 HOH HOH . L 5 HOH B 68 368 385 HOH HOH . L 5 HOH B 69 369 6 HOH HOH . L 5 HOH B 70 370 468 HOH HOH . L 5 HOH B 71 371 538 HOH HOH . L 5 HOH B 72 372 505 HOH HOH . L 5 HOH B 73 373 12 HOH HOH . L 5 HOH B 74 374 416 HOH HOH . L 5 HOH B 75 375 65 HOH HOH . L 5 HOH B 76 376 344 HOH HOH . L 5 HOH B 77 377 470 HOH HOH . L 5 HOH B 78 378 82 HOH HOH . L 5 HOH B 79 379 494 HOH HOH . L 5 HOH B 80 380 325 HOH HOH . L 5 HOH B 81 381 520 HOH HOH . L 5 HOH B 82 382 269 HOH HOH . L 5 HOH B 83 383 515 HOH HOH . L 5 HOH B 84 384 576 HOH HOH . L 5 HOH B 85 385 102 HOH HOH . L 5 HOH B 86 386 427 HOH HOH . L 5 HOH B 87 387 89 HOH HOH . L 5 HOH B 88 388 575 HOH HOH . L 5 HOH B 89 389 436 HOH HOH . L 5 HOH B 90 390 67 HOH HOH . L 5 HOH B 91 391 339 HOH HOH . L 5 HOH B 92 392 60 HOH HOH . L 5 HOH B 93 393 408 HOH HOH . L 5 HOH B 94 394 405 HOH HOH . L 5 HOH B 95 395 352 HOH HOH . L 5 HOH B 96 396 435 HOH HOH . L 5 HOH B 97 397 563 HOH HOH . L 5 HOH B 98 398 512 HOH HOH . L 5 HOH B 99 399 419 HOH HOH . L 5 HOH B 100 400 580 HOH HOH . L 5 HOH B 101 401 483 HOH HOH . L 5 HOH B 102 402 522 HOH HOH . L 5 HOH B 103 403 572 HOH HOH . L 5 HOH B 104 404 481 HOH HOH . L 5 HOH B 105 405 354 HOH HOH . L 5 HOH B 106 406 551 HOH HOH . L 5 HOH B 107 407 549 HOH HOH . L 5 HOH B 108 408 262 HOH HOH . L 5 HOH B 109 409 480 HOH HOH . L 5 HOH B 110 410 444 HOH HOH . L 5 HOH B 111 411 456 HOH HOH . L 5 HOH B 112 412 395 HOH HOH . L 5 HOH B 113 413 529 HOH HOH . L 5 HOH B 114 414 489 HOH HOH . L 5 HOH B 115 415 356 HOH HOH . L 5 HOH B 116 416 365 HOH HOH . L 5 HOH B 117 417 503 HOH HOH . L 5 HOH B 118 418 504 HOH HOH . L 5 HOH B 119 419 336 HOH HOH . L 5 HOH B 120 420 310 HOH HOH . L 5 HOH B 121 421 492 HOH HOH . L 5 HOH B 122 422 511 HOH HOH . L 5 HOH B 123 423 445 HOH HOH . L 5 HOH B 124 424 531 HOH HOH . L 5 HOH B 125 425 387 HOH HOH . L 5 HOH B 126 426 569 HOH HOH . L 5 HOH B 127 427 525 HOH HOH . L 5 HOH B 128 428 571 HOH HOH . L 5 HOH B 129 429 39 HOH HOH . L 5 HOH B 130 430 359 HOH HOH . L 5 HOH B 131 431 355 HOH HOH . L 5 HOH B 132 432 446 HOH HOH . L 5 HOH B 133 433 429 HOH HOH . L 5 HOH B 134 434 547 HOH HOH . L 5 HOH B 135 435 17 HOH HOH . L 5 HOH B 136 436 95 HOH HOH . L 5 HOH B 137 437 265 HOH HOH . L 5 HOH B 138 438 280 HOH HOH . L 5 HOH B 139 439 585 HOH HOH . L 5 HOH B 140 440 605 HOH HOH . L 5 HOH B 141 441 366 HOH HOH . L 5 HOH B 142 442 392 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . F 4 60.966 -9.35 88.12 1 90.31 ? C TRS 204 A 1 HETATM 2 C C1 TRS . . . F 4 59.502 -9.004 87.899 1 92.45 ? C1 TRS 204 A 1 HETATM 3 C C2 TRS . . . F 4 61.125 -10.367 89.249 1 54.48 ? C2 TRS 204 A 1 HETATM 4 C C3 TRS . . . F 4 61.748 -8.073 88.422 1 87.87 ? C3 TRS 204 A 1 HETATM 5 N N TRS . . . F 4 61.441 -9.939 86.863 1 24.73 ? N TRS 204 A 1 HETATM 6 O O1 TRS . . . F 4 59.41 -8.1 86.821 1 78.3 ? O1 TRS 204 A 1 HETATM 7 O O2 TRS . . . F 4 60.366 -11.52 88.965 1 84.71 ? O2 TRS 204 A 1 HETATM 8 O O3 TRS . . . F 4 62.762 -8.314 89.373 1 63.64 ? O3 TRS 204 A 1 HETATM 9 H H11 TRS . . . F 4 59.086 -8.552 88.799 1 110.95 ? H11 TRS 204 A 1 HETATM 10 H H12 TRS . . . F 4 58.935 -9.908 87.675 1 110.95 ? H12 TRS 204 A 1 HETATM 11 H H21 TRS . . . F 4 60.789 -9.928 90.188 1 65.37 ? H21 TRS 204 A 1 HETATM 12 H H22 TRS . . . F 4 62.176 -10.636 89.356 1 65.37 ? H22 TRS 204 A 1 HETATM 13 H H31 TRS . . . F 4 61.067 -7.311 88.802 1 105.45 ? H31 TRS 204 A 1 HETATM 14 H H32 TRS . . . F 4 62.195 -7.694 87.503 1 105.45 ? H32 TRS 204 A 1 HETATM 15 H HN1 TRS . . . F 4 61.337 -9.329 86.058 1 29.68 ? HN1 TRS 204 A 1 HETATM 16 H HN2 TRS . . . F 4 61.117 -10.887 86.705 1 29.68 ? HN2 TRS 204 A 1 HETATM 17 H HN3 TRS . . . F 4 62.439 -10.028 86.986 1 29.68 ? HN3 TRS 204 A 1 HETATM 18 H HO1 TRS . . . F 4 58.471 -7.868 86.668 1 93.96 ? HO1 TRS 204 A 1 HETATM 19 H HO2 TRS . . . F 4 60.472 -12.168 89.693 1 101.65 ? HO2 TRS 204 A 1 HETATM 20 H HO3 TRS . . . F 4 63.248 -7.482 89.55 1 76.37 ? HO3 TRS 204 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #