data_5IXO # _model_server_result.job_id x8bse7n4n0NhSFQhko78EA _model_server_result.datetime_utc '2024-11-02 00:19:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ixo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":712}' # _entry.id 5IXO # _exptl.entry_id 5IXO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5IXO _cell.length_a 148.678 _cell.length_b 148.678 _cell.length_c 58.041 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IXO _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1098 NAG 2 n B NAG 2 B 2 NAG A 1099 NAG 2 n C NAG 1 C 1 NAG A 1150 NAG 2 n C NAG 2 C 2 NAG A 1151 NAG 2 n D NAG 1 D 1 NAG A 1576 NAG 2 n D NAG 2 D 2 NAG A 1577 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 40 A CYS 54 1_555 A SG CYS 47 A CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? disulf ? disulf2 A SG CYS 72 A CYS 86 1_555 A SG CYS 99 A CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf3 A SG CYS 362 A CYS 376 1_555 A SG CYS 388 A CYS 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf4 A SG CYS 592 A CYS 606 1_555 A SG CYS 599 A CYS 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? covale ? covale1 A ND2 ASN 84 A ASN 98 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.475 ? covale ? covale2 A ND2 ASN 88 A ASN 102 1_555 E C1 NAG . A NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale3 A ND2 ASN 136 A ASN 150 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? covale ? covale4 A ND2 ASN 171 A ASN 185 1_555 F C1 NAG . A NAG 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 A ND2 ASN 255 A ASN 269 1_555 G C1 NAG . A NAG 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale6 A ND2 ASN 562 A ASN 576 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale7 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale8 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale9 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? metalc ? metalc1 A OG SER 467 A SER 481 1_555 H MG MG . A MG 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5IXO _atom_sites.fract_transf_matrix[1][1] 0.006726 _atom_sites.fract_transf_matrix[1][2] 0.003883 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007766 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017229 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 703 1102 NAG NAG . F 3 NAG A 1 706 1185 NAG NAG . G 3 NAG A 1 707 1269 NAG NAG . H 4 MG A 1 710 2000 MG MG . I 5 EDO A 1 711 3000 EDO EDO . J 5 EDO A 1 712 3001 EDO EDO . K 6 HOH A 1 801 76 HOH HOH . K 6 HOH A 2 802 69 HOH HOH . K 6 HOH A 3 803 10 HOH HOH . K 6 HOH A 4 804 48 HOH HOH . K 6 HOH A 5 805 18 HOH HOH . K 6 HOH A 6 806 73 HOH HOH . K 6 HOH A 7 807 2 HOH HOH . K 6 HOH A 8 808 53 HOH HOH . K 6 HOH A 9 809 43 HOH HOH . K 6 HOH A 10 810 21 HOH HOH . K 6 HOH A 11 811 54 HOH HOH . K 6 HOH A 12 812 24 HOH HOH . K 6 HOH A 13 813 3 HOH HOH . K 6 HOH A 14 814 29 HOH HOH . K 6 HOH A 15 815 27 HOH HOH . K 6 HOH A 16 816 14 HOH HOH . K 6 HOH A 17 817 67 HOH HOH . K 6 HOH A 18 818 49 HOH HOH . K 6 HOH A 19 819 52 HOH HOH . K 6 HOH A 20 820 25 HOH HOH . K 6 HOH A 21 821 39 HOH HOH . K 6 HOH A 22 822 12 HOH HOH . K 6 HOH A 23 823 23 HOH HOH . K 6 HOH A 24 824 8 HOH HOH . K 6 HOH A 25 825 30 HOH HOH . K 6 HOH A 26 826 20 HOH HOH . K 6 HOH A 27 827 55 HOH HOH . K 6 HOH A 28 828 16 HOH HOH . K 6 HOH A 29 829 6 HOH HOH . K 6 HOH A 30 830 66 HOH HOH . K 6 HOH A 31 831 63 HOH HOH . K 6 HOH A 32 832 26 HOH HOH . K 6 HOH A 33 833 75 HOH HOH . K 6 HOH A 34 834 13 HOH HOH . K 6 HOH A 35 835 68 HOH HOH . K 6 HOH A 36 836 45 HOH HOH . K 6 HOH A 37 837 60 HOH HOH . K 6 HOH A 38 838 59 HOH HOH . K 6 HOH A 39 839 51 HOH HOH . K 6 HOH A 40 840 36 HOH HOH . K 6 HOH A 41 841 7 HOH HOH . K 6 HOH A 42 842 17 HOH HOH . K 6 HOH A 43 843 5 HOH HOH . K 6 HOH A 44 844 74 HOH HOH . K 6 HOH A 45 845 22 HOH HOH . K 6 HOH A 46 846 31 HOH HOH . K 6 HOH A 47 847 15 HOH HOH . K 6 HOH A 48 848 44 HOH HOH . K 6 HOH A 49 849 56 HOH HOH . K 6 HOH A 50 850 4 HOH HOH . K 6 HOH A 51 851 70 HOH HOH . K 6 HOH A 52 852 9 HOH HOH . K 6 HOH A 53 853 28 HOH HOH . K 6 HOH A 54 854 64 HOH HOH . K 6 HOH A 55 855 46 HOH HOH . K 6 HOH A 56 856 50 HOH HOH . K 6 HOH A 57 857 1 HOH HOH . K 6 HOH A 58 858 35 HOH HOH . K 6 HOH A 59 859 71 HOH HOH . K 6 HOH A 60 860 61 HOH HOH . K 6 HOH A 61 861 40 HOH HOH . K 6 HOH A 62 862 11 HOH HOH . K 6 HOH A 63 863 32 HOH HOH . K 6 HOH A 64 864 41 HOH HOH . K 6 HOH A 65 865 77 HOH HOH . K 6 HOH A 66 866 58 HOH HOH . K 6 HOH A 67 867 19 HOH HOH . K 6 HOH A 68 868 65 HOH HOH . K 6 HOH A 69 869 62 HOH HOH . K 6 HOH A 70 870 37 HOH HOH . K 6 HOH A 71 871 72 HOH HOH . K 6 HOH A 72 872 42 HOH HOH . K 6 HOH A 73 873 38 HOH HOH . K 6 HOH A 74 874 78 HOH HOH . K 6 HOH A 75 875 33 HOH HOH . K 6 HOH A 76 876 57 HOH HOH . K 6 HOH A 77 877 34 HOH HOH . K 6 HOH A 78 878 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 5 -21.151 80.155 -13.876 1 92.64 ? C1 EDO 712 A 1 HETATM 2 O O1 EDO . . . J 5 -20.788 81.319 -14.687 1 89.72 ? O1 EDO 712 A 1 HETATM 3 C C2 EDO . . . J 5 -20.001 79.526 -13.045 1 98.58 ? C2 EDO 712 A 1 HETATM 4 O O2 EDO . . . J 5 -18.994 78.893 -13.875 1 91.03 ? O2 EDO 712 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 4 #