data_5IXR # _model_server_result.job_id zDo1yeS2v-Y5zAUJdPsB0A _model_server_result.datetime_utc '2024-12-04 16:45:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ixr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 5IXR # _exptl.entry_id 5IXR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IXR _cell.length_a 123.051 _cell.length_b 123.051 _cell.length_c 123.051 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IXR _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 105 A HIS 105 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc2 C FE HEM . A HEM 201 1_555 D N3 IMD . A IMD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc3 B NE2 HIS 105 B HIS 105 1_555 F FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc4 F FE HEM . B HEM 501 1_555 G N1 IMD . B IMD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 5IXR _atom_sites.fract_transf_matrix[1][1] 0.008127 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008127 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008127 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 201 500 HEM HEM . D 3 IMD A 1 202 1 IMD IMD . E 4 MLI A 1 203 1 MLI MLI . F 2 HEM B 1 501 501 HEM HEM . G 3 IMD B 1 502 2 IMD IMD . H 4 MLI B 1 503 2 MLI MLI . I 5 HOH A 1 301 20 HOH HOH . I 5 HOH A 2 302 41 HOH HOH . I 5 HOH A 3 303 51 HOH HOH . I 5 HOH A 4 304 44 HOH HOH . I 5 HOH A 5 305 10 HOH HOH . I 5 HOH A 6 306 4 HOH HOH . I 5 HOH A 7 307 53 HOH HOH . I 5 HOH A 8 308 17 HOH HOH . I 5 HOH A 9 309 45 HOH HOH . I 5 HOH A 10 310 9 HOH HOH . I 5 HOH A 11 311 5 HOH HOH . I 5 HOH A 12 312 48 HOH HOH . I 5 HOH A 13 313 38 HOH HOH . I 5 HOH A 14 314 8 HOH HOH . I 5 HOH A 15 315 34 HOH HOH . I 5 HOH A 16 316 49 HOH HOH . I 5 HOH A 17 317 47 HOH HOH . J 5 HOH B 1 601 42 HOH HOH . J 5 HOH B 2 602 43 HOH HOH . J 5 HOH B 3 603 30 HOH HOH . J 5 HOH B 4 604 13 HOH HOH . J 5 HOH B 5 605 50 HOH HOH . J 5 HOH B 6 606 54 HOH HOH . J 5 HOH B 7 607 6 HOH HOH . J 5 HOH B 8 608 46 HOH HOH . J 5 HOH B 9 609 12 HOH HOH . J 5 HOH B 10 610 3 HOH HOH . J 5 HOH B 11 611 39 HOH HOH . J 5 HOH B 12 612 25 HOH HOH . J 5 HOH B 13 613 15 HOH HOH . J 5 HOH B 14 614 14 HOH HOH . J 5 HOH B 15 615 26 HOH HOH . J 5 HOH B 16 616 55 HOH HOH . J 5 HOH B 17 617 28 HOH HOH . J 5 HOH B 18 618 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . F 2 -3.318 -40.727 -13.057 1 45.02 ? CHA HEM 501 B 1 HETATM 2 C CHB HEM . . . F 2 -1.062 -44.786 -11.572 1 44.05 ? CHB HEM 501 B 1 HETATM 3 C CHC HEM . . . F 2 -2.321 -43.73 -6.959 1 38.28 ? CHC HEM 501 B 1 HETATM 4 C CHD HEM . . . F 2 -4.022 -39.535 -8.389 1 43.5 ? CHD HEM 501 B 1 HETATM 5 C C1A HEM . . . F 2 -2.634 -41.921 -13.014 1 47.79 ? C1A HEM 501 B 1 HETATM 6 C C2A HEM . . . F 2 -2.322 -42.693 -14.156 1 47.13 ? C2A HEM 501 B 1 HETATM 7 C C3A HEM . . . F 2 -1.684 -43.832 -13.719 1 43.45 ? C3A HEM 501 B 1 HETATM 8 C C4A HEM . . . F 2 -1.577 -43.762 -12.329 1 45.86 ? C4A HEM 501 B 1 HETATM 9 C CMA HEM . . . F 2 -1.146 -44.992 -14.476 1 38.63 ? CMA HEM 501 B 1 HETATM 10 C CAA HEM . . . F 2 -2.654 -42.29 -15.575 1 51.58 ? CAA HEM 501 B 1 HETATM 11 C CBA HEM . . . F 2 -1.939 -41.026 -16.072 1 52.3 ? CBA HEM 501 B 1 HETATM 12 C CGA HEM . . . F 2 -1.648 -41.2 -17.539 1 57.11 ? CGA HEM 501 B 1 HETATM 13 O O1A HEM . . . F 2 -2.214 -42.085 -18.211 1 65.01 ? O1A HEM 501 B 1 HETATM 14 O O2A HEM . . . F 2 -0.814 -40.488 -18.12 1 56.98 ? O2A HEM 501 B 1 HETATM 15 C C1B HEM . . . F 2 -1.274 -44.86 -10.167 1 49.07 ? C1B HEM 501 B 1 HETATM 16 C C2B HEM . . . F 2 -0.94 -45.985 -9.341 1 51.3 ? C2B HEM 501 B 1 HETATM 17 C C3B HEM . . . F 2 -1.304 -45.684 -8.053 1 48.01 ? C3B HEM 501 B 1 HETATM 18 C C4B HEM . . . F 2 -1.855 -44.345 -8.114 1 46.24 ? C4B HEM 501 B 1 HETATM 19 C CMB HEM . . . F 2 -0.303 -47.271 -9.821 1 51.96 ? CMB HEM 501 B 1 HETATM 20 C CAB HEM . . . F 2 -1.188 -46.425 -6.783 1 52.03 ? CAB HEM 501 B 1 HETATM 21 C CBB HEM . . . F 2 -0.587 -47.598 -6.707 1 56.8 ? CBB HEM 501 B 1 HETATM 22 C C1C HEM . . . F 2 -2.883 -42.501 -6.96 1 38.95 ? C1C HEM 501 B 1 HETATM 23 C C2C HEM . . . F 2 -3.478 -41.949 -5.836 1 45.61 ? C2C HEM 501 B 1 HETATM 24 C C3C HEM . . . F 2 -4.001 -40.727 -6.197 1 44.42 ? C3C HEM 501 B 1 HETATM 25 C C4C HEM . . . F 2 -3.668 -40.548 -7.591 1 41.52 ? C4C HEM 501 B 1 HETATM 26 C CMC HEM . . . F 2 -3.537 -42.619 -4.493 1 50.21 ? CMC HEM 501 B 1 HETATM 27 C CAC HEM . . . F 2 -4.639 -39.846 -5.19 1 55.24 ? CAC HEM 501 B 1 HETATM 28 C CBC HEM . . . F 2 -4.943 -38.546 -5.387 1 58.13 ? CBC HEM 501 B 1 HETATM 29 C C1D HEM . . . F 2 -3.974 -39.612 -9.768 1 39.79 ? C1D HEM 501 B 1 HETATM 30 C C2D HEM . . . F 2 -4.629 -38.577 -10.566 1 38 ? C2D HEM 501 B 1 HETATM 31 C C3D HEM . . . F 2 -4.448 -38.88 -11.857 1 45.21 ? C3D HEM 501 B 1 HETATM 32 C C4D HEM . . . F 2 -3.69 -40.143 -11.86 1 45.94 ? C4D HEM 501 B 1 HETATM 33 C CMD HEM . . . F 2 -5.339 -37.37 -10.095 1 41.54 ? CMD HEM 501 B 1 HETATM 34 C CAD HEM . . . F 2 -4.97 -38.089 -13.024 1 47.54 ? CAD HEM 501 B 1 HETATM 35 C CBD HEM . . . F 2 -3.897 -37.612 -13.981 1 51.02 ? CBD HEM 501 B 1 HETATM 36 C CGD HEM . . . F 2 -3.952 -36.119 -14.13 1 50.9 ? CGD HEM 501 B 1 HETATM 37 O O1D HEM . . . F 2 -4.595 -35.417 -13.331 1 57.01 ? O1D HEM 501 B 1 HETATM 38 O O2D HEM . . . F 2 -3.316 -35.563 -15.04 1 53.88 ? O2D HEM 501 B 1 HETATM 39 N NA HEM . . . F 2 -2.184 -42.602 -11.89 1 46.64 ? NA HEM 501 B 1 HETATM 40 N NB HEM . . . F 2 -1.753 -43.91 -9.375 1 44.95 ? NB HEM 501 B 1 HETATM 41 N NC HEM . . . F 2 -3.028 -41.657 -8.026 1 41.63 ? NC HEM 501 B 1 HETATM 42 N ND HEM . . . F 2 -3.373 -40.511 -10.569 1 42.52 ? ND HEM 501 B 1 HETATM 43 FE FE HEM . . . F 2 -2.573 -42.12 -10.003 1 48.19 ? FE HEM 501 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #