data_5IXR # _model_server_result.job_id gr9zzkU-VHbn5o-ykb5b8g _model_server_result.datetime_utc '2024-12-04 17:13:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ixr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":503}' # _entry.id 5IXR # _exptl.entry_id 5IXR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IXR _cell.length_a 123.051 _cell.length_b 123.051 _cell.length_c 123.051 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IXR _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 105 A HIS 105 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc2 C FE HEM . A HEM 201 1_555 D N3 IMD . A IMD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc3 B NE2 HIS 105 B HIS 105 1_555 F FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc4 F FE HEM . B HEM 501 1_555 G N1 IMD . B IMD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 329 n n C1 C3 MLI sing 330 n n C1 H11 MLI sing 331 n n C1 H12 MLI sing 332 n n C2 O6 MLI doub 333 n n C2 O7 MLI sing 334 n n C3 O8 MLI doub 335 n n C3 O9 MLI sing 336 n n # _atom_sites.entry_id 5IXR _atom_sites.fract_transf_matrix[1][1] 0.008127 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008127 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008127 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 201 500 HEM HEM . D 3 IMD A 1 202 1 IMD IMD . E 4 MLI A 1 203 1 MLI MLI . F 2 HEM B 1 501 501 HEM HEM . G 3 IMD B 1 502 2 IMD IMD . H 4 MLI B 1 503 2 MLI MLI . I 5 HOH A 1 301 20 HOH HOH . I 5 HOH A 2 302 41 HOH HOH . I 5 HOH A 3 303 51 HOH HOH . I 5 HOH A 4 304 44 HOH HOH . I 5 HOH A 5 305 10 HOH HOH . I 5 HOH A 6 306 4 HOH HOH . I 5 HOH A 7 307 53 HOH HOH . I 5 HOH A 8 308 17 HOH HOH . I 5 HOH A 9 309 45 HOH HOH . I 5 HOH A 10 310 9 HOH HOH . I 5 HOH A 11 311 5 HOH HOH . I 5 HOH A 12 312 48 HOH HOH . I 5 HOH A 13 313 38 HOH HOH . I 5 HOH A 14 314 8 HOH HOH . I 5 HOH A 15 315 34 HOH HOH . I 5 HOH A 16 316 49 HOH HOH . I 5 HOH A 17 317 47 HOH HOH . J 5 HOH B 1 601 42 HOH HOH . J 5 HOH B 2 602 43 HOH HOH . J 5 HOH B 3 603 30 HOH HOH . J 5 HOH B 4 604 13 HOH HOH . J 5 HOH B 5 605 50 HOH HOH . J 5 HOH B 6 606 54 HOH HOH . J 5 HOH B 7 607 6 HOH HOH . J 5 HOH B 8 608 46 HOH HOH . J 5 HOH B 9 609 12 HOH HOH . J 5 HOH B 10 610 3 HOH HOH . J 5 HOH B 11 611 39 HOH HOH . J 5 HOH B 12 612 25 HOH HOH . J 5 HOH B 13 613 15 HOH HOH . J 5 HOH B 14 614 14 HOH HOH . J 5 HOH B 15 615 26 HOH HOH . J 5 HOH B 16 616 55 HOH HOH . J 5 HOH B 17 617 28 HOH HOH . J 5 HOH B 18 618 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . H 4 -20.942 -45.911 -10.138 1 79.63 ? C1 MLI 503 B 1 HETATM 2 C C2 MLI . . . H 4 -21.846 -45.656 -8.966 1 83.62 ? C2 MLI 503 B 1 HETATM 3 C C3 MLI . . . H 4 -20.378 -47.285 -9.898 1 87.78 ? C3 MLI 503 B 1 HETATM 4 O O6 MLI . . . H 4 -23.041 -46.055 -9.102 1 79.3 ? O6 MLI 503 B 1 HETATM 5 O O7 MLI . . . H 4 -21.331 -45.097 -7.944 1 72.13 ? O7 MLI 503 B 1 HETATM 6 O O8 MLI . . . H 4 -19.983 -47.904 -10.901 1 97.92 ? O8 MLI 503 B 1 HETATM 7 O O9 MLI . . . H 4 -20.327 -47.75 -8.722 1 81.42 ? O9 MLI 503 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 7 #