data_5IXT # _model_server_result.job_id 6rKJF96quX3UB2y9F-u1Pw _model_server_result.datetime_utc '2024-10-20 00:24:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ixt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":714}' # _entry.id 5IXT # _exptl.entry_id 5IXT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5IXT _cell.length_a 148.921 _cell.length_b 148.921 _cell.length_c 58.022 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IXT _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 K N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 1098 NAG 3 n C NAG 2 C 2 NAG A 1099 NAG 3 n D NAG 1 D 1 NAG A 1150 NAG 3 n D NAG 2 D 2 NAG A 1151 NAG 4 n E NAG 1 E 1 NAG A 1269 NAG 4 n E NAG 2 E 2 NAG A 1270 NAG 4 n E BMA 3 E 3 BMA A 1271 BMA 4 n E MAN 4 E 4 MAN A 1272 MAN 3 n F NAG 1 F 1 NAG A 1576 NAG 3 n F NAG 2 F 2 NAG A 1577 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 40 A CYS 54 1_555 A SG CYS 47 A CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? disulf ? disulf2 A SG CYS 72 A CYS 86 1_555 A SG CYS 99 A CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf3 A SG CYS 362 A CYS 376 1_555 A SG CYS 388 A CYS 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf4 A SG CYS 592 A CYS 606 1_555 A SG CYS 599 A CYS 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? covale ? covale1 A ND2 ASN 84 A ASN 98 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 A ND2 ASN 88 A ASN 102 1_555 G C1 NAG . A NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale3 A ND2 ASN 136 A ASN 150 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale4 A ND2 ASN 171 A ASN 185 1_555 H C1 NAG . A NAG 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale5 A ND2 ASN 255 A ASN 269 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale6 A ND2 ASN 268 A ASN 282 1_555 I C1 NAG . A NAG 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale7 A ND2 ASN 562 A ASN 576 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale8 B C ALA 11 B ALA 63 1_555 B N HYP 12 B HYP 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale9 B C HYP 12 B HYP 64 1_555 B N SER 13 B SER 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale10 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale11 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale12 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale13 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale14 E O3 BMA . E BMA 3 1_555 E C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale15 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? metalc ? metalc1 A OG SER 312 A SER 326 1_555 J MG MG . A MG 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc2 A OG SER 445 A SER 459 1_555 K MG MG . A MG 715 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.965 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5IXT _atom_sites.fract_transf_matrix[1][1] 0.006715 _atom_sites.fract_transf_matrix[1][2] 0.003877 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007754 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 NAG A 1 703 1102 NAG NAG . H 5 NAG A 1 706 1185 NAG NAG . I 5 NAG A 1 711 1282 NAG NAG . J 6 MG A 1 714 2001 MG MG . K 6 MG A 1 715 2002 MG MG . L 7 EDO B 1 2000 2000 EDO EDO . M 8 HOH A 1 801 30 HOH HOH . M 8 HOH A 2 802 29 HOH HOH . M 8 HOH A 3 803 38 HOH HOH . M 8 HOH A 4 804 36 HOH HOH . M 8 HOH A 5 805 25 HOH HOH . M 8 HOH A 6 806 14 HOH HOH . M 8 HOH A 7 807 22 HOH HOH . M 8 HOH A 8 808 26 HOH HOH . M 8 HOH A 9 809 6 HOH HOH . M 8 HOH A 10 810 31 HOH HOH . M 8 HOH A 11 811 16 HOH HOH . M 8 HOH A 12 812 7 HOH HOH . M 8 HOH A 13 813 1 HOH HOH . M 8 HOH A 14 814 21 HOH HOH . M 8 HOH A 15 815 40 HOH HOH . M 8 HOH A 16 816 11 HOH HOH . M 8 HOH A 17 817 2 HOH HOH . M 8 HOH A 18 818 32 HOH HOH . M 8 HOH A 19 819 12 HOH HOH . M 8 HOH A 20 820 8 HOH HOH . M 8 HOH A 21 821 3 HOH HOH . M 8 HOH A 22 822 13 HOH HOH . M 8 HOH A 23 823 27 HOH HOH . M 8 HOH A 24 824 5 HOH HOH . M 8 HOH A 25 825 24 HOH HOH . M 8 HOH A 26 826 10 HOH HOH . M 8 HOH A 27 827 15 HOH HOH . M 8 HOH A 28 828 18 HOH HOH . M 8 HOH A 29 829 23 HOH HOH . M 8 HOH A 30 830 39 HOH HOH . M 8 HOH A 31 831 19 HOH HOH . M 8 HOH A 32 832 35 HOH HOH . M 8 HOH A 33 833 28 HOH HOH . M 8 HOH A 34 834 33 HOH HOH . M 8 HOH A 35 835 37 HOH HOH . M 8 HOH A 36 836 9 HOH HOH . M 8 HOH A 37 837 17 HOH HOH . M 8 HOH A 38 838 34 HOH HOH . M 8 HOH A 39 839 20 HOH HOH . N 8 HOH B 1 2101 4 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 6 _atom_site.Cartn_x 23.624 _atom_site.Cartn_y 50.96 _atom_site.Cartn_z 23.716 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 83.78 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 714 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #