data_5IXV # _model_server_result.job_id 4Qph6cd_rOuauSA-fJkmLw _model_server_result.datetime_utc '2024-11-30 03:57:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ixv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5IXV # _exptl.entry_id 5IXV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IXV _cell.length_a 122.387 _cell.length_b 122.387 _cell.length_c 122.387 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IXV _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CE MET 98 A MET 98 1_555 A CE MET 130 A MET 130 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.542 ? metalc ? metalc1 A NE2 HIS 105 A HIS 105 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc2 C FE HEM . A HEM 201 1_555 D N3 1MZ . A 1MZ 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? metalc ? metalc3 B NE2 HIS 105 B HIS 105 1_555 F FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc4 F FE HEM . B HEM 501 1_555 G N3 1MZ . B 1MZ 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 142 n n CHA C4D HEM doub 143 n n CHA HHA HEM sing 144 n n CHB C4A HEM sing 145 n n CHB C1B HEM doub 146 n n CHB HHB HEM sing 147 n n CHC C4B HEM sing 148 n n CHC C1C HEM doub 149 n n CHC HHC HEM sing 150 n n CHD C4C HEM doub 151 n n CHD C1D HEM sing 152 n n CHD HHD HEM sing 153 n n C1A C2A HEM doub 154 n y C1A NA HEM sing 155 n y C2A C3A HEM sing 156 n y C2A CAA HEM sing 157 n n C3A C4A HEM doub 158 n y C3A CMA HEM sing 159 n n C4A NA HEM sing 160 n y CMA HMA HEM sing 161 n n CMA HMAA HEM sing 162 n n CMA HMAB HEM sing 163 n n CAA CBA HEM sing 164 n n CAA HAA HEM sing 165 n n CAA HAAA HEM sing 166 n n CBA CGA HEM sing 167 n n CBA HBA HEM sing 168 n n CBA HBAA HEM sing 169 n n CGA O1A HEM doub 170 n n CGA O2A HEM sing 171 n n C1B C2B HEM sing 172 n n C1B NB HEM sing 173 n n C2B C3B HEM doub 174 n n C2B CMB HEM sing 175 n n C3B C4B HEM sing 176 n n C3B CAB HEM sing 177 n n C4B NB HEM doub 178 n n CMB HMB HEM sing 179 n n CMB HMBA HEM sing 180 n n CMB HMBB HEM sing 181 n n CAB CBB HEM doub 182 n n CAB HAB HEM sing 183 n n CBB HBB HEM sing 184 n n CBB HBBA HEM sing 185 n n C1C C2C HEM sing 186 n y C1C NC HEM sing 187 n y C2C C3C HEM doub 188 n y C2C CMC HEM sing 189 n n C3C C4C HEM sing 190 n y C3C CAC HEM sing 191 n n C4C NC HEM sing 192 n y CMC HMC HEM sing 193 n n CMC HMCA HEM sing 194 n n CMC HMCB HEM sing 195 n n CAC CBC HEM doub 196 n n CAC HAC HEM sing 197 n n CBC HBC HEM sing 198 n n CBC HBCA HEM sing 199 n n C1D C2D HEM sing 200 n n C1D ND HEM doub 201 n n C2D C3D HEM doub 202 n n C2D CMD HEM sing 203 n n C3D C4D HEM sing 204 n n C3D CAD HEM sing 205 n n C4D ND HEM sing 206 n n CMD HMD HEM sing 207 n n CMD HMDA HEM sing 208 n n CMD HMDB HEM sing 209 n n CAD CBD HEM sing 210 n n CAD HAD HEM sing 211 n n CAD HADA HEM sing 212 n n CBD CGD HEM sing 213 n n CBD HBD HEM sing 214 n n CBD HBDA HEM sing 215 n n CGD O1D HEM doub 216 n n CGD O2D HEM sing 217 n n O2A H2A HEM sing 218 n n O2D H2D HEM sing 219 n n FE NA HEM sing 220 n n FE NB HEM sing 221 n n FE NC HEM sing 222 n n FE ND HEM sing 223 n n # _atom_sites.entry_id 5IXV _atom_sites.fract_transf_matrix[1][1] 0.008171 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008171 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008171 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 201 500 HEM HEM . D 3 1MZ A 1 202 1 1MZ 1MZ . E 4 MLI A 1 203 2 MLI MLI . F 2 HEM B 1 501 501 HEM HEM . G 3 1MZ B 1 502 1 1MZ 1MZ . H 4 MLI B 1 503 1 MLI MLI . I 5 HOH A 1 301 71 HOH HOH . I 5 HOH A 2 302 38 HOH HOH . I 5 HOH A 3 303 30 HOH HOH . I 5 HOH A 4 304 147 HOH HOH . I 5 HOH A 5 305 20 HOH HOH . I 5 HOH A 6 306 50 HOH HOH . I 5 HOH A 7 307 19 HOH HOH . I 5 HOH A 8 308 105 HOH HOH . I 5 HOH A 9 309 79 HOH HOH . I 5 HOH A 10 310 33 HOH HOH . I 5 HOH A 11 311 60 HOH HOH . I 5 HOH A 12 312 28 HOH HOH . I 5 HOH A 13 313 14 HOH HOH . I 5 HOH A 14 314 4 HOH HOH . I 5 HOH A 15 315 62 HOH HOH . I 5 HOH A 16 316 97 HOH HOH . I 5 HOH A 17 317 93 HOH HOH . I 5 HOH A 18 318 96 HOH HOH . I 5 HOH A 19 319 75 HOH HOH . I 5 HOH A 20 320 10 HOH HOH . I 5 HOH A 21 321 58 HOH HOH . I 5 HOH A 22 322 16 HOH HOH . I 5 HOH A 23 323 17 HOH HOH . I 5 HOH A 24 324 121 HOH HOH . I 5 HOH A 25 325 111 HOH HOH . I 5 HOH A 26 326 18 HOH HOH . I 5 HOH A 27 327 24 HOH HOH . I 5 HOH A 28 328 136 HOH HOH . I 5 HOH A 29 329 39 HOH HOH . I 5 HOH A 30 330 98 HOH HOH . I 5 HOH A 31 331 47 HOH HOH . I 5 HOH A 32 332 99 HOH HOH . I 5 HOH A 33 333 63 HOH HOH . I 5 HOH A 34 334 12 HOH HOH . I 5 HOH A 35 335 69 HOH HOH . I 5 HOH A 36 336 27 HOH HOH . I 5 HOH A 37 337 54 HOH HOH . I 5 HOH A 38 338 76 HOH HOH . I 5 HOH A 39 339 68 HOH HOH . I 5 HOH A 40 340 41 HOH HOH . I 5 HOH A 41 341 144 HOH HOH . I 5 HOH A 42 342 94 HOH HOH . I 5 HOH A 43 343 2 HOH HOH . I 5 HOH A 44 344 87 HOH HOH . I 5 HOH A 45 345 65 HOH HOH . I 5 HOH A 46 346 104 HOH HOH . I 5 HOH A 47 347 48 HOH HOH . I 5 HOH A 48 348 9 HOH HOH . I 5 HOH A 49 349 77 HOH HOH . I 5 HOH A 50 350 90 HOH HOH . I 5 HOH A 51 351 1 HOH HOH . I 5 HOH A 52 352 51 HOH HOH . I 5 HOH A 53 353 85 HOH HOH . I 5 HOH A 54 354 150 HOH HOH . I 5 HOH A 55 355 154 HOH HOH . I 5 HOH A 56 356 124 HOH HOH . I 5 HOH A 57 357 89 HOH HOH . I 5 HOH A 58 358 139 HOH HOH . I 5 HOH A 59 359 110 HOH HOH . I 5 HOH A 60 360 146 HOH HOH . I 5 HOH A 61 361 148 HOH HOH . I 5 HOH A 62 362 149 HOH HOH . I 5 HOH A 63 363 152 HOH HOH . I 5 HOH A 64 364 134 HOH HOH . I 5 HOH A 65 365 155 HOH HOH . I 5 HOH A 66 366 153 HOH HOH . J 5 HOH B 1 601 131 HOH HOH . J 5 HOH B 2 602 141 HOH HOH . J 5 HOH B 3 603 133 HOH HOH . J 5 HOH B 4 604 34 HOH HOH . J 5 HOH B 5 605 59 HOH HOH . J 5 HOH B 6 606 102 HOH HOH . J 5 HOH B 7 607 61 HOH HOH . J 5 HOH B 8 608 81 HOH HOH . J 5 HOH B 9 609 52 HOH HOH . J 5 HOH B 10 610 49 HOH HOH . J 5 HOH B 11 611 101 HOH HOH . J 5 HOH B 12 612 107 HOH HOH . J 5 HOH B 13 613 35 HOH HOH . J 5 HOH B 14 614 53 HOH HOH . J 5 HOH B 15 615 57 HOH HOH . J 5 HOH B 16 616 66 HOH HOH . J 5 HOH B 17 617 32 HOH HOH . J 5 HOH B 18 618 43 HOH HOH . J 5 HOH B 19 619 15 HOH HOH . J 5 HOH B 20 620 126 HOH HOH . J 5 HOH B 21 621 95 HOH HOH . J 5 HOH B 22 622 128 HOH HOH . J 5 HOH B 23 623 113 HOH HOH . J 5 HOH B 24 624 3 HOH HOH . J 5 HOH B 25 625 22 HOH HOH . J 5 HOH B 26 626 29 HOH HOH . J 5 HOH B 27 627 118 HOH HOH . J 5 HOH B 28 628 25 HOH HOH . J 5 HOH B 29 629 21 HOH HOH . J 5 HOH B 30 630 23 HOH HOH . J 5 HOH B 31 631 74 HOH HOH . J 5 HOH B 32 632 84 HOH HOH . J 5 HOH B 33 633 11 HOH HOH . J 5 HOH B 34 634 70 HOH HOH . J 5 HOH B 35 635 31 HOH HOH . J 5 HOH B 36 636 36 HOH HOH . J 5 HOH B 37 637 7 HOH HOH . J 5 HOH B 38 638 100 HOH HOH . J 5 HOH B 39 639 73 HOH HOH . J 5 HOH B 40 640 67 HOH HOH . J 5 HOH B 41 641 55 HOH HOH . J 5 HOH B 42 642 86 HOH HOH . J 5 HOH B 43 643 37 HOH HOH . J 5 HOH B 44 644 114 HOH HOH . J 5 HOH B 45 645 26 HOH HOH . J 5 HOH B 46 646 72 HOH HOH . J 5 HOH B 47 647 6 HOH HOH . J 5 HOH B 48 648 5 HOH HOH . J 5 HOH B 49 649 151 HOH HOH . J 5 HOH B 50 650 108 HOH HOH . J 5 HOH B 51 651 119 HOH HOH . J 5 HOH B 52 652 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 10.443 -26.534 -19.507 1 37.41 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . C 2 14.581 -28.587 -20.84 1 39.8 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . C 2 13.501 -27.433 -25.45 1 43.24 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . C 2 9.087 -26.126 -24.106 1 33.45 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . C 2 11.613 -27.224 -19.488 1 41.42 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . C 2 12.355 -27.458 -18.296 1 30.34 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . C 2 13.545 -27.963 -18.685 1 32.96 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . C 2 13.512 -28.145 -20.088 1 38.66 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . C 2 14.633 -28.39 -17.719 1 42.51 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . C 2 11.978 -27.121 -16.858 1 41.5 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . C 2 10.978 -28.172 -16.335 1 42.34 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . C 2 10.956 -28.284 -14.831 1 46.5 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . C 2 11.763 -27.627 -14.126 1 42.56 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . C 2 10.093 -29.033 -14.287 1 55.05 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . C 2 14.651 -28.396 -22.223 1 40.36 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . C 2 15.841 -28.596 -22.962 1 39.24 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . C 2 15.552 -28.246 -24.251 1 35.82 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . C 2 14.141 -27.824 -24.272 1 34.91 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . C 2 17.185 -29.015 -22.402 1 47.93 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . C 2 16.387 -28.331 -25.466 1 38.63 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . C 2 17.533 -28.994 -25.458 1 38.48 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . C 2 12.184 -26.99 -25.495 1 38.81 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . C 2 11.522 -26.501 -26.646 1 37.75 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . C 2 10.248 -26.135 -26.242 1 33.06 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . C 2 10.138 -26.48 -24.862 1 36.63 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . C 2 12.143 -26.242 -28.011 1 37.21 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . C 2 9.14 -25.587 -27.041 1 37.32 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . C 2 9.095 -25.725 -28.344 1 42.52 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . C 2 9.187 -26.126 -22.719 1 33.97 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . C 2 8.165 -25.447 -21.939 1 33.99 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . C 2 8.522 -25.559 -20.652 1 32.24 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . C 2 9.847 -26.175 -20.701 1 29.79 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . C 2 6.969 -24.705 -22.495 1 34.5 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . C 2 7.859 -24.802 -19.506 1 32.79 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . C 2 7.379 -25.645 -18.331 1 39.29 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . C 2 5.872 -25.875 -18.369 1 40.89 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . C 2 5.222 -25.485 -19.372 1 32.15 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . C 2 5.332 -26.65 -17.525 1 32.75 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . C 2 12.299 -27.704 -20.588 1 31.54 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . C 2 13.653 -28.066 -23.06 1 41 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . C 2 11.326 -26.98 -24.419 1 28.17 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . C 2 10.115 -26.68 -21.929 1 31.54 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . C 2 11.812 -27.335 -22.466 1 36.99 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #