data_5IXV # _model_server_result.job_id K2e06f7R8WAP6JCTrNNyRA _model_server_result.datetime_utc '2024-11-08 13:03:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ixv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 5IXV # _exptl.entry_id 5IXV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IXV _cell.length_a 122.387 _cell.length_b 122.387 _cell.length_c 122.387 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IXV _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CE MET 98 A MET 98 1_555 A CE MET 130 A MET 130 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.542 ? metalc ? metalc1 A NE2 HIS 105 A HIS 105 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc2 C FE HEM . A HEM 201 1_555 D N3 1MZ . A 1MZ 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? metalc ? metalc3 B NE2 HIS 105 B HIS 105 1_555 F FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc4 F FE HEM . B HEM 501 1_555 G N3 1MZ . B 1MZ 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 332 n n C1 C3 MLI sing 333 n n C1 H11 MLI sing 334 n n C1 H12 MLI sing 335 n n C2 O6 MLI doub 336 n n C2 O7 MLI sing 337 n n C3 O8 MLI doub 338 n n C3 O9 MLI sing 339 n n # _atom_sites.entry_id 5IXV _atom_sites.fract_transf_matrix[1][1] 0.008171 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008171 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008171 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 201 500 HEM HEM . D 3 1MZ A 1 202 1 1MZ 1MZ . E 4 MLI A 1 203 2 MLI MLI . F 2 HEM B 1 501 501 HEM HEM . G 3 1MZ B 1 502 1 1MZ 1MZ . H 4 MLI B 1 503 1 MLI MLI . I 5 HOH A 1 301 71 HOH HOH . I 5 HOH A 2 302 38 HOH HOH . I 5 HOH A 3 303 30 HOH HOH . I 5 HOH A 4 304 147 HOH HOH . I 5 HOH A 5 305 20 HOH HOH . I 5 HOH A 6 306 50 HOH HOH . I 5 HOH A 7 307 19 HOH HOH . I 5 HOH A 8 308 105 HOH HOH . I 5 HOH A 9 309 79 HOH HOH . I 5 HOH A 10 310 33 HOH HOH . I 5 HOH A 11 311 60 HOH HOH . I 5 HOH A 12 312 28 HOH HOH . I 5 HOH A 13 313 14 HOH HOH . I 5 HOH A 14 314 4 HOH HOH . I 5 HOH A 15 315 62 HOH HOH . I 5 HOH A 16 316 97 HOH HOH . I 5 HOH A 17 317 93 HOH HOH . I 5 HOH A 18 318 96 HOH HOH . I 5 HOH A 19 319 75 HOH HOH . I 5 HOH A 20 320 10 HOH HOH . I 5 HOH A 21 321 58 HOH HOH . I 5 HOH A 22 322 16 HOH HOH . I 5 HOH A 23 323 17 HOH HOH . I 5 HOH A 24 324 121 HOH HOH . I 5 HOH A 25 325 111 HOH HOH . I 5 HOH A 26 326 18 HOH HOH . I 5 HOH A 27 327 24 HOH HOH . I 5 HOH A 28 328 136 HOH HOH . I 5 HOH A 29 329 39 HOH HOH . I 5 HOH A 30 330 98 HOH HOH . I 5 HOH A 31 331 47 HOH HOH . I 5 HOH A 32 332 99 HOH HOH . I 5 HOH A 33 333 63 HOH HOH . I 5 HOH A 34 334 12 HOH HOH . I 5 HOH A 35 335 69 HOH HOH . I 5 HOH A 36 336 27 HOH HOH . I 5 HOH A 37 337 54 HOH HOH . I 5 HOH A 38 338 76 HOH HOH . I 5 HOH A 39 339 68 HOH HOH . I 5 HOH A 40 340 41 HOH HOH . I 5 HOH A 41 341 144 HOH HOH . I 5 HOH A 42 342 94 HOH HOH . I 5 HOH A 43 343 2 HOH HOH . I 5 HOH A 44 344 87 HOH HOH . I 5 HOH A 45 345 65 HOH HOH . I 5 HOH A 46 346 104 HOH HOH . I 5 HOH A 47 347 48 HOH HOH . I 5 HOH A 48 348 9 HOH HOH . I 5 HOH A 49 349 77 HOH HOH . I 5 HOH A 50 350 90 HOH HOH . I 5 HOH A 51 351 1 HOH HOH . I 5 HOH A 52 352 51 HOH HOH . I 5 HOH A 53 353 85 HOH HOH . I 5 HOH A 54 354 150 HOH HOH . I 5 HOH A 55 355 154 HOH HOH . I 5 HOH A 56 356 124 HOH HOH . I 5 HOH A 57 357 89 HOH HOH . I 5 HOH A 58 358 139 HOH HOH . I 5 HOH A 59 359 110 HOH HOH . I 5 HOH A 60 360 146 HOH HOH . I 5 HOH A 61 361 148 HOH HOH . I 5 HOH A 62 362 149 HOH HOH . I 5 HOH A 63 363 152 HOH HOH . I 5 HOH A 64 364 134 HOH HOH . I 5 HOH A 65 365 155 HOH HOH . I 5 HOH A 66 366 153 HOH HOH . J 5 HOH B 1 601 131 HOH HOH . J 5 HOH B 2 602 141 HOH HOH . J 5 HOH B 3 603 133 HOH HOH . J 5 HOH B 4 604 34 HOH HOH . J 5 HOH B 5 605 59 HOH HOH . J 5 HOH B 6 606 102 HOH HOH . J 5 HOH B 7 607 61 HOH HOH . J 5 HOH B 8 608 81 HOH HOH . J 5 HOH B 9 609 52 HOH HOH . J 5 HOH B 10 610 49 HOH HOH . J 5 HOH B 11 611 101 HOH HOH . J 5 HOH B 12 612 107 HOH HOH . J 5 HOH B 13 613 35 HOH HOH . J 5 HOH B 14 614 53 HOH HOH . J 5 HOH B 15 615 57 HOH HOH . J 5 HOH B 16 616 66 HOH HOH . J 5 HOH B 17 617 32 HOH HOH . J 5 HOH B 18 618 43 HOH HOH . J 5 HOH B 19 619 15 HOH HOH . J 5 HOH B 20 620 126 HOH HOH . J 5 HOH B 21 621 95 HOH HOH . J 5 HOH B 22 622 128 HOH HOH . J 5 HOH B 23 623 113 HOH HOH . J 5 HOH B 24 624 3 HOH HOH . J 5 HOH B 25 625 22 HOH HOH . J 5 HOH B 26 626 29 HOH HOH . J 5 HOH B 27 627 118 HOH HOH . J 5 HOH B 28 628 25 HOH HOH . J 5 HOH B 29 629 21 HOH HOH . J 5 HOH B 30 630 23 HOH HOH . J 5 HOH B 31 631 74 HOH HOH . J 5 HOH B 32 632 84 HOH HOH . J 5 HOH B 33 633 11 HOH HOH . J 5 HOH B 34 634 70 HOH HOH . J 5 HOH B 35 635 31 HOH HOH . J 5 HOH B 36 636 36 HOH HOH . J 5 HOH B 37 637 7 HOH HOH . J 5 HOH B 38 638 100 HOH HOH . J 5 HOH B 39 639 73 HOH HOH . J 5 HOH B 40 640 67 HOH HOH . J 5 HOH B 41 641 55 HOH HOH . J 5 HOH B 42 642 86 HOH HOH . J 5 HOH B 43 643 37 HOH HOH . J 5 HOH B 44 644 114 HOH HOH . J 5 HOH B 45 645 26 HOH HOH . J 5 HOH B 46 646 72 HOH HOH . J 5 HOH B 47 647 6 HOH HOH . J 5 HOH B 48 648 5 HOH HOH . J 5 HOH B 49 649 151 HOH HOH . J 5 HOH B 50 650 108 HOH HOH . J 5 HOH B 51 651 119 HOH HOH . J 5 HOH B 52 652 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . E 4 15.316 -9.025 -24.443 1 79.48 ? C1 MLI 203 A 1 HETATM 2 C C2 MLI . . . E 4 16.401 -9.297 -23.421 1 57.8 ? C2 MLI 203 A 1 HETATM 3 C C3 MLI . . . E 4 14.453 -7.878 -23.982 1 67.18 ? C3 MLI 203 A 1 HETATM 4 O O6 MLI . . . E 4 17.515 -9.573 -23.863 1 59.24 ? O6 MLI 203 A 1 HETATM 5 O O7 MLI . . . E 4 16.182 -9.208 -22.191 1 64.65 ? O7 MLI 203 A 1 HETATM 6 O O8 MLI . . . E 4 13.276 -7.823 -24.411 1 86.53 ? O8 MLI 203 A 1 HETATM 7 O O9 MLI . . . E 4 14.957 -7.052 -23.18 1 53.57 ? O9 MLI 203 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #