data_5IXW # _model_server_result.job_id d8RDlOZhO5Eq4yKH3FbvAQ _model_server_result.datetime_utc '2024-12-04 17:10:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ixw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 5IXW # _exptl.entry_id 5IXW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IXW _cell.length_a 122.83 _cell.length_b 122.83 _cell.length_c 122.83 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IXW _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 105 A HIS 105 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc2 C FE HEM . A HEM 201 1_555 D N3 NVI . A NVI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc3 B NE2 HIS 105 B HIS 105 1_555 F FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc4 F FE HEM . B HEM 501 1_555 G N3 NVI . B NVI 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 319 n n C1 C3 MLI sing 320 n n C1 H11 MLI sing 321 n n C1 H12 MLI sing 322 n n C2 O6 MLI doub 323 n n C2 O7 MLI sing 324 n n C3 O8 MLI doub 325 n n C3 O9 MLI sing 326 n n # _atom_sites.entry_id 5IXW _atom_sites.fract_transf_matrix[1][1] 0.008141 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008141 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008141 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 201 500 HEM HEM . D 3 NVI A 1 202 1 NVI DRG . E 4 MLI A 1 203 1 MLI MLI . F 2 HEM B 1 501 501 HEM HEM . G 3 NVI B 1 502 1 NVI DRG . H 5 HOH A 1 301 13 HOH HOH . H 5 HOH A 2 302 5 HOH HOH . H 5 HOH A 3 303 51 HOH HOH . H 5 HOH A 4 304 79 HOH HOH . H 5 HOH A 5 305 4 HOH HOH . H 5 HOH A 6 306 74 HOH HOH . H 5 HOH A 7 307 73 HOH HOH . H 5 HOH A 8 308 3 HOH HOH . H 5 HOH A 9 309 14 HOH HOH . H 5 HOH A 10 310 1 HOH HOH . H 5 HOH A 11 311 69 HOH HOH . H 5 HOH A 12 312 25 HOH HOH . H 5 HOH A 13 313 62 HOH HOH . H 5 HOH A 14 314 76 HOH HOH . H 5 HOH A 15 315 15 HOH HOH . H 5 HOH A 16 316 67 HOH HOH . H 5 HOH A 17 317 71 HOH HOH . H 5 HOH A 18 318 56 HOH HOH . H 5 HOH A 19 319 42 HOH HOH . H 5 HOH A 20 320 68 HOH HOH . H 5 HOH A 21 321 57 HOH HOH . H 5 HOH A 22 322 22 HOH HOH . H 5 HOH A 23 323 60 HOH HOH . H 5 HOH A 24 324 53 HOH HOH . H 5 HOH A 25 325 24 HOH HOH . H 5 HOH A 26 326 81 HOH HOH . H 5 HOH A 27 327 58 HOH HOH . H 5 HOH A 28 328 49 HOH HOH . H 5 HOH A 29 329 83 HOH HOH . H 5 HOH A 30 330 36 HOH HOH . I 5 HOH B 1 601 6 HOH HOH . I 5 HOH B 2 602 47 HOH HOH . I 5 HOH B 3 603 8 HOH HOH . I 5 HOH B 4 604 16 HOH HOH . I 5 HOH B 5 605 64 HOH HOH . I 5 HOH B 6 606 48 HOH HOH . I 5 HOH B 7 607 40 HOH HOH . I 5 HOH B 8 608 11 HOH HOH . I 5 HOH B 9 609 28 HOH HOH . I 5 HOH B 10 610 9 HOH HOH . I 5 HOH B 11 611 17 HOH HOH . I 5 HOH B 12 612 39 HOH HOH . I 5 HOH B 13 613 7 HOH HOH . I 5 HOH B 14 614 63 HOH HOH . I 5 HOH B 15 615 26 HOH HOH . I 5 HOH B 16 616 70 HOH HOH . I 5 HOH B 17 617 85 HOH HOH . I 5 HOH B 18 618 18 HOH HOH . I 5 HOH B 19 619 50 HOH HOH . I 5 HOH B 20 620 33 HOH HOH . I 5 HOH B 21 621 77 HOH HOH . I 5 HOH B 22 622 29 HOH HOH . I 5 HOH B 23 623 21 HOH HOH . I 5 HOH B 24 624 72 HOH HOH . I 5 HOH B 25 625 19 HOH HOH . I 5 HOH B 26 626 59 HOH HOH . I 5 HOH B 27 627 41 HOH HOH . I 5 HOH B 28 628 27 HOH HOH . I 5 HOH B 29 629 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . E 4 21.779 -15.946 -7.838 1 55.39 ? C1 MLI 203 A 1 HETATM 2 C C2 MLI . . . E 4 21.631 -14.483 -7.581 1 53.55 ? C2 MLI 203 A 1 HETATM 3 C C3 MLI . . . E 4 23.053 -16.269 -7.137 1 56.75 ? C3 MLI 203 A 1 HETATM 4 O O6 MLI . . . E 4 21.786 -13.728 -8.564 1 46.74 ? O6 MLI 203 A 1 HETATM 5 O O7 MLI . . . E 4 21.402 -14.136 -6.39 1 49.35 ? O7 MLI 203 A 1 HETATM 6 O O8 MLI . . . E 4 24.115 -15.846 -7.637 1 56.52 ? O8 MLI 203 A 1 HETATM 7 O O9 MLI . . . E 4 22.975 -16.911 -6.079 1 66.61 ? O9 MLI 203 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #