data_5IXX # _model_server_result.job_id nyvTdMFEdORWfugCBPeYhw _model_server_result.datetime_utc '2024-12-02 11:38:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ixx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 5IXX # _exptl.entry_id 5IXX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IXX _cell.length_a 122.349 _cell.length_b 122.349 _cell.length_c 122.349 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IXX _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 105 A HIS 105 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? metalc ? metalc2 C FE HEM . A HEM 201 1_555 D NAF 6EX . A 6EX 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? metalc ? metalc3 B NE2 HIS 105 B HIS 105 1_555 F FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? metalc ? metalc4 F FE HEM . B HEM 501 1_555 G NAF 6EX . B 6EX 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 333 n n C1 C3 MLI sing 334 n n C1 H11 MLI sing 335 n n C1 H12 MLI sing 336 n n C2 O6 MLI doub 337 n n C2 O7 MLI sing 338 n n C3 O8 MLI doub 339 n n C3 O9 MLI sing 340 n n # _atom_sites.entry_id 5IXX _atom_sites.fract_transf_matrix[1][1] 0.008173 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008173 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008173 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 201 500 HEM HEM . D 3 6EX A 1 202 1 6EX DRG . E 4 MLI A 1 203 1 MLI MLI . F 2 HEM B 1 501 501 HEM HEM . G 3 6EX B 1 502 1 6EX DRG . H 5 HOH A 1 301 50 HOH HOH . H 5 HOH A 2 302 58 HOH HOH . H 5 HOH A 3 303 30 HOH HOH . H 5 HOH A 4 304 34 HOH HOH . H 5 HOH A 5 305 107 HOH HOH . H 5 HOH A 6 306 62 HOH HOH . H 5 HOH A 7 307 2 HOH HOH . H 5 HOH A 8 308 85 HOH HOH . H 5 HOH A 9 309 10 HOH HOH . H 5 HOH A 10 310 51 HOH HOH . H 5 HOH A 11 311 1 HOH HOH . H 5 HOH A 12 312 68 HOH HOH . H 5 HOH A 13 313 45 HOH HOH . H 5 HOH A 14 314 15 HOH HOH . H 5 HOH A 15 315 57 HOH HOH . H 5 HOH A 16 316 5 HOH HOH . H 5 HOH A 17 317 109 HOH HOH . H 5 HOH A 18 318 93 HOH HOH . H 5 HOH A 19 319 63 HOH HOH . H 5 HOH A 20 320 61 HOH HOH . H 5 HOH A 21 321 69 HOH HOH . H 5 HOH A 22 322 60 HOH HOH . H 5 HOH A 23 323 22 HOH HOH . H 5 HOH A 24 324 11 HOH HOH . H 5 HOH A 25 325 47 HOH HOH . H 5 HOH A 26 326 18 HOH HOH . H 5 HOH A 27 327 74 HOH HOH . H 5 HOH A 28 328 90 HOH HOH . H 5 HOH A 29 329 100 HOH HOH . H 5 HOH A 30 330 13 HOH HOH . H 5 HOH A 31 331 6 HOH HOH . H 5 HOH A 32 332 53 HOH HOH . H 5 HOH A 33 333 72 HOH HOH . H 5 HOH A 34 334 97 HOH HOH . H 5 HOH A 35 335 16 HOH HOH . H 5 HOH A 36 336 70 HOH HOH . H 5 HOH A 37 337 78 HOH HOH . H 5 HOH A 38 338 108 HOH HOH . H 5 HOH A 39 339 99 HOH HOH . H 5 HOH A 40 340 59 HOH HOH . H 5 HOH A 41 341 44 HOH HOH . H 5 HOH A 42 342 40 HOH HOH . H 5 HOH A 43 343 81 HOH HOH . H 5 HOH A 44 344 42 HOH HOH . H 5 HOH A 45 345 88 HOH HOH . H 5 HOH A 46 346 7 HOH HOH . H 5 HOH A 47 347 21 HOH HOH . H 5 HOH A 48 348 56 HOH HOH . I 5 HOH B 1 601 26 HOH HOH . I 5 HOH B 2 602 41 HOH HOH . I 5 HOH B 3 603 82 HOH HOH . I 5 HOH B 4 604 37 HOH HOH . I 5 HOH B 5 605 89 HOH HOH . I 5 HOH B 6 606 23 HOH HOH . I 5 HOH B 7 607 95 HOH HOH . I 5 HOH B 8 608 64 HOH HOH . I 5 HOH B 9 609 73 HOH HOH . I 5 HOH B 10 610 14 HOH HOH . I 5 HOH B 11 611 8 HOH HOH . I 5 HOH B 12 612 9 HOH HOH . I 5 HOH B 13 613 92 HOH HOH . I 5 HOH B 14 614 46 HOH HOH . I 5 HOH B 15 615 29 HOH HOH . I 5 HOH B 16 616 4 HOH HOH . I 5 HOH B 17 617 19 HOH HOH . I 5 HOH B 18 618 43 HOH HOH . I 5 HOH B 19 619 54 HOH HOH . I 5 HOH B 20 620 28 HOH HOH . I 5 HOH B 21 621 67 HOH HOH . I 5 HOH B 22 622 35 HOH HOH . I 5 HOH B 23 623 27 HOH HOH . I 5 HOH B 24 624 103 HOH HOH . I 5 HOH B 25 625 91 HOH HOH . I 5 HOH B 26 626 24 HOH HOH . I 5 HOH B 27 627 106 HOH HOH . I 5 HOH B 28 628 55 HOH HOH . I 5 HOH B 29 629 94 HOH HOH . I 5 HOH B 30 630 33 HOH HOH . I 5 HOH B 31 631 65 HOH HOH . I 5 HOH B 32 632 96 HOH HOH . I 5 HOH B 33 633 20 HOH HOH . I 5 HOH B 34 634 12 HOH HOH . I 5 HOH B 35 635 38 HOH HOH . I 5 HOH B 36 636 25 HOH HOH . I 5 HOH B 37 637 80 HOH HOH . I 5 HOH B 38 638 49 HOH HOH . I 5 HOH B 39 639 17 HOH HOH . I 5 HOH B 40 640 87 HOH HOH . I 5 HOH B 41 641 86 HOH HOH . I 5 HOH B 42 642 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . E 4 -15.876 -7.379 21.632 1 60.1 ? C1 MLI 203 A 1 HETATM 2 C C2 MLI . . . E 4 -15.688 -6.991 23.065 1 55.01 ? C2 MLI 203 A 1 HETATM 3 C C3 MLI . . . E 4 -14.405 -7.17 21.387 1 59.81 ? C3 MLI 203 A 1 HETATM 4 O O6 MLI . . . E 4 -15.769 -5.756 23.191 1 65.16 ? O6 MLI 203 A 1 HETATM 5 O O7 MLI . . . E 4 -15.37 -7.844 23.929 1 52.39 ? O7 MLI 203 A 1 HETATM 6 O O8 MLI . . . E 4 -13.975 -6.035 21.048 1 76.23 ? O8 MLI 203 A 1 HETATM 7 O O9 MLI . . . E 4 -13.708 -8.179 21.608 1 44.97 ? O9 MLI 203 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 7 #