data_5IXX # _model_server_result.job_id 9WTtQjf2b2F8VnPaJN2-QA _model_server_result.datetime_utc '2024-12-02 11:29:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ixx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 5IXX # _exptl.entry_id 5IXX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IXX _cell.length_a 122.349 _cell.length_b 122.349 _cell.length_c 122.349 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IXX _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 105 A HIS 105 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? metalc ? metalc2 C FE HEM . A HEM 201 1_555 D NAF 6EX . A 6EX 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? metalc ? metalc3 B NE2 HIS 105 B HIS 105 1_555 F FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? metalc ? metalc4 F FE HEM . B HEM 501 1_555 G NAF 6EX . B 6EX 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 143 n n CHA C4D HEM doub 144 n n CHA HHA HEM sing 145 n n CHB C4A HEM sing 146 n n CHB C1B HEM doub 147 n n CHB HHB HEM sing 148 n n CHC C4B HEM sing 149 n n CHC C1C HEM doub 150 n n CHC HHC HEM sing 151 n n CHD C4C HEM doub 152 n n CHD C1D HEM sing 153 n n CHD HHD HEM sing 154 n n C1A C2A HEM doub 155 n y C1A NA HEM sing 156 n y C2A C3A HEM sing 157 n y C2A CAA HEM sing 158 n n C3A C4A HEM doub 159 n y C3A CMA HEM sing 160 n n C4A NA HEM sing 161 n y CMA HMA HEM sing 162 n n CMA HMAA HEM sing 163 n n CMA HMAB HEM sing 164 n n CAA CBA HEM sing 165 n n CAA HAA HEM sing 166 n n CAA HAAA HEM sing 167 n n CBA CGA HEM sing 168 n n CBA HBA HEM sing 169 n n CBA HBAA HEM sing 170 n n CGA O1A HEM doub 171 n n CGA O2A HEM sing 172 n n C1B C2B HEM sing 173 n n C1B NB HEM sing 174 n n C2B C3B HEM doub 175 n n C2B CMB HEM sing 176 n n C3B C4B HEM sing 177 n n C3B CAB HEM sing 178 n n C4B NB HEM doub 179 n n CMB HMB HEM sing 180 n n CMB HMBA HEM sing 181 n n CMB HMBB HEM sing 182 n n CAB CBB HEM doub 183 n n CAB HAB HEM sing 184 n n CBB HBB HEM sing 185 n n CBB HBBA HEM sing 186 n n C1C C2C HEM sing 187 n y C1C NC HEM sing 188 n y C2C C3C HEM doub 189 n y C2C CMC HEM sing 190 n n C3C C4C HEM sing 191 n y C3C CAC HEM sing 192 n n C4C NC HEM sing 193 n y CMC HMC HEM sing 194 n n CMC HMCA HEM sing 195 n n CMC HMCB HEM sing 196 n n CAC CBC HEM doub 197 n n CAC HAC HEM sing 198 n n CBC HBC HEM sing 199 n n CBC HBCA HEM sing 200 n n C1D C2D HEM sing 201 n n C1D ND HEM doub 202 n n C2D C3D HEM doub 203 n n C2D CMD HEM sing 204 n n C3D C4D HEM sing 205 n n C3D CAD HEM sing 206 n n C4D ND HEM sing 207 n n CMD HMD HEM sing 208 n n CMD HMDA HEM sing 209 n n CMD HMDB HEM sing 210 n n CAD CBD HEM sing 211 n n CAD HAD HEM sing 212 n n CAD HADA HEM sing 213 n n CBD CGD HEM sing 214 n n CBD HBD HEM sing 215 n n CBD HBDA HEM sing 216 n n CGD O1D HEM doub 217 n n CGD O2D HEM sing 218 n n O2A H2A HEM sing 219 n n O2D H2D HEM sing 220 n n FE NA HEM sing 221 n n FE NB HEM sing 222 n n FE NC HEM sing 223 n n FE ND HEM sing 224 n n # _atom_sites.entry_id 5IXX _atom_sites.fract_transf_matrix[1][1] 0.008173 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008173 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008173 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 201 500 HEM HEM . D 3 6EX A 1 202 1 6EX DRG . E 4 MLI A 1 203 1 MLI MLI . F 2 HEM B 1 501 501 HEM HEM . G 3 6EX B 1 502 1 6EX DRG . H 5 HOH A 1 301 50 HOH HOH . H 5 HOH A 2 302 58 HOH HOH . H 5 HOH A 3 303 30 HOH HOH . H 5 HOH A 4 304 34 HOH HOH . H 5 HOH A 5 305 107 HOH HOH . H 5 HOH A 6 306 62 HOH HOH . H 5 HOH A 7 307 2 HOH HOH . H 5 HOH A 8 308 85 HOH HOH . H 5 HOH A 9 309 10 HOH HOH . H 5 HOH A 10 310 51 HOH HOH . H 5 HOH A 11 311 1 HOH HOH . H 5 HOH A 12 312 68 HOH HOH . H 5 HOH A 13 313 45 HOH HOH . H 5 HOH A 14 314 15 HOH HOH . H 5 HOH A 15 315 57 HOH HOH . H 5 HOH A 16 316 5 HOH HOH . H 5 HOH A 17 317 109 HOH HOH . H 5 HOH A 18 318 93 HOH HOH . H 5 HOH A 19 319 63 HOH HOH . H 5 HOH A 20 320 61 HOH HOH . H 5 HOH A 21 321 69 HOH HOH . H 5 HOH A 22 322 60 HOH HOH . H 5 HOH A 23 323 22 HOH HOH . H 5 HOH A 24 324 11 HOH HOH . H 5 HOH A 25 325 47 HOH HOH . H 5 HOH A 26 326 18 HOH HOH . H 5 HOH A 27 327 74 HOH HOH . H 5 HOH A 28 328 90 HOH HOH . H 5 HOH A 29 329 100 HOH HOH . H 5 HOH A 30 330 13 HOH HOH . H 5 HOH A 31 331 6 HOH HOH . H 5 HOH A 32 332 53 HOH HOH . H 5 HOH A 33 333 72 HOH HOH . H 5 HOH A 34 334 97 HOH HOH . H 5 HOH A 35 335 16 HOH HOH . H 5 HOH A 36 336 70 HOH HOH . H 5 HOH A 37 337 78 HOH HOH . H 5 HOH A 38 338 108 HOH HOH . H 5 HOH A 39 339 99 HOH HOH . H 5 HOH A 40 340 59 HOH HOH . H 5 HOH A 41 341 44 HOH HOH . H 5 HOH A 42 342 40 HOH HOH . H 5 HOH A 43 343 81 HOH HOH . H 5 HOH A 44 344 42 HOH HOH . H 5 HOH A 45 345 88 HOH HOH . H 5 HOH A 46 346 7 HOH HOH . H 5 HOH A 47 347 21 HOH HOH . H 5 HOH A 48 348 56 HOH HOH . I 5 HOH B 1 601 26 HOH HOH . I 5 HOH B 2 602 41 HOH HOH . I 5 HOH B 3 603 82 HOH HOH . I 5 HOH B 4 604 37 HOH HOH . I 5 HOH B 5 605 89 HOH HOH . I 5 HOH B 6 606 23 HOH HOH . I 5 HOH B 7 607 95 HOH HOH . I 5 HOH B 8 608 64 HOH HOH . I 5 HOH B 9 609 73 HOH HOH . I 5 HOH B 10 610 14 HOH HOH . I 5 HOH B 11 611 8 HOH HOH . I 5 HOH B 12 612 9 HOH HOH . I 5 HOH B 13 613 92 HOH HOH . I 5 HOH B 14 614 46 HOH HOH . I 5 HOH B 15 615 29 HOH HOH . I 5 HOH B 16 616 4 HOH HOH . I 5 HOH B 17 617 19 HOH HOH . I 5 HOH B 18 618 43 HOH HOH . I 5 HOH B 19 619 54 HOH HOH . I 5 HOH B 20 620 28 HOH HOH . I 5 HOH B 21 621 67 HOH HOH . I 5 HOH B 22 622 35 HOH HOH . I 5 HOH B 23 623 27 HOH HOH . I 5 HOH B 24 624 103 HOH HOH . I 5 HOH B 25 625 91 HOH HOH . I 5 HOH B 26 626 24 HOH HOH . I 5 HOH B 27 627 106 HOH HOH . I 5 HOH B 28 628 55 HOH HOH . I 5 HOH B 29 629 94 HOH HOH . I 5 HOH B 30 630 33 HOH HOH . I 5 HOH B 31 631 65 HOH HOH . I 5 HOH B 32 632 96 HOH HOH . I 5 HOH B 33 633 20 HOH HOH . I 5 HOH B 34 634 12 HOH HOH . I 5 HOH B 35 635 38 HOH HOH . I 5 HOH B 36 636 25 HOH HOH . I 5 HOH B 37 637 80 HOH HOH . I 5 HOH B 38 638 49 HOH HOH . I 5 HOH B 39 639 17 HOH HOH . I 5 HOH B 40 640 87 HOH HOH . I 5 HOH B 41 641 86 HOH HOH . I 5 HOH B 42 642 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . F 2 -43.457 9.144 27.712 1 29.3 ? CHA HEM 501 B 1 HETATM 2 C CHB HEM . . . F 2 -42.382 13.257 30.003 1 40.44 ? CHB HEM 501 B 1 HETATM 3 C CHC HEM . . . F 2 -37.749 12.395 28.86 1 38.39 ? CHC HEM 501 B 1 HETATM 4 C CHD HEM . . . F 2 -38.774 8 27.256 1 33.09 ? CHD HEM 501 B 1 HETATM 5 C C1A HEM . . . F 2 -43.526 10.329 28.436 1 38.78 ? C1A HEM 501 B 1 HETATM 6 C C2A HEM . . . F 2 -44.737 11.029 28.667 1 36.71 ? C2A HEM 501 B 1 HETATM 7 C C3A HEM . . . F 2 -44.401 12.185 29.287 1 36.68 ? C3A HEM 501 B 1 HETATM 8 C C4A HEM . . . F 2 -43.013 12.168 29.44 1 43.28 ? C4A HEM 501 B 1 HETATM 9 C CMA HEM . . . F 2 -45.295 13.276 29.824 1 37.06 ? CMA HEM 501 B 1 HETATM 10 C CAA HEM . . . F 2 -46.166 10.655 28.314 1 44.2 ? CAA HEM 501 B 1 HETATM 11 C CBA HEM . . . F 2 -46.657 9.537 29.254 1 42.23 ? CBA HEM 501 B 1 HETATM 12 C CGA HEM . . . F 2 -48.137 9.602 29.53 1 39.26 ? CGA HEM 501 B 1 HETATM 13 O O1A HEM . . . F 2 -48.851 10.521 29.105 1 45.25 ? O1A HEM 501 B 1 HETATM 14 O O2A HEM . . . F 2 -48.73 8.792 30.271 1 46.59 ? O2A HEM 501 B 1 HETATM 15 C C1B HEM . . . F 2 -41 13.357 29.788 1 36.85 ? C1B HEM 501 B 1 HETATM 16 C C2B HEM . . . F 2 -40.289 14.542 30.096 1 35.65 ? C2B HEM 501 B 1 HETATM 17 C C3B HEM . . . F 2 -38.97 14.406 29.781 1 47.04 ? C3B HEM 501 B 1 HETATM 18 C C4B HEM . . . F 2 -38.898 13.005 29.304 1 34.87 ? C4B HEM 501 B 1 HETATM 19 C CMB HEM . . . F 2 -40.831 15.819 30.618 1 30.17 ? CMB HEM 501 B 1 HETATM 20 C CAB HEM . . . F 2 -38.091 15.555 30.087 1 51.87 ? CAB HEM 501 B 1 HETATM 21 C CBB HEM . . . F 2 -36.78 15.476 30.146 1 63.98 ? CBB HEM 501 B 1 HETATM 22 C C1C HEM . . . F 2 -37.592 11.15 28.321 1 29.46 ? C1C HEM 501 B 1 HETATM 23 C C2C HEM . . . F 2 -36.403 10.632 27.778 1 34.37 ? C2C HEM 501 B 1 HETATM 24 C C3C HEM . . . F 2 -36.723 9.37 27.326 1 34.19 ? C3C HEM 501 B 1 HETATM 25 C C4C HEM . . . F 2 -38.08 9.097 27.658 1 35.27 ? C4C HEM 501 B 1 HETATM 26 C CMC HEM . . . F 2 -35.033 11.217 27.564 1 47.22 ? CMC HEM 501 B 1 HETATM 27 C CAC HEM . . . F 2 -35.714 8.487 26.758 1 37.65 ? CAC HEM 501 B 1 HETATM 28 C CBC HEM . . . F 2 -35.84 7.171 26.837 1 44.03 ? CBC HEM 501 B 1 HETATM 29 C C1D HEM . . . F 2 -40.162 8.09 27.22 1 35.35 ? C1D HEM 501 B 1 HETATM 30 C C2D HEM . . . F 2 -40.877 7.039 26.491 1 32.24 ? C2D HEM 501 B 1 HETATM 31 C C3D HEM . . . F 2 -42.157 7.395 26.651 1 35.73 ? C3D HEM 501 B 1 HETATM 32 C C4D HEM . . . F 2 -42.197 8.62 27.457 1 29.91 ? C4D HEM 501 B 1 HETATM 33 C CMD HEM . . . F 2 -40.4 5.811 25.76 1 37.27 ? CMD HEM 501 B 1 HETATM 34 C CAD HEM . . . F 2 -43.316 6.65 26.06 1 32.85 ? CAD HEM 501 B 1 HETATM 35 C CBD HEM . . . F 2 -44.485 6.047 26.808 1 31.58 ? CBD HEM 501 B 1 HETATM 36 C CGD HEM . . . F 2 -44.474 4.549 27.034 1 37.03 ? CGD HEM 501 B 1 HETATM 37 O O1D HEM . . . F 2 -43.496 3.817 26.737 1 31.39 ? O1D HEM 501 B 1 HETATM 38 O O2D HEM . . . F 2 -45.455 4.099 27.683 1 32.82 ? O2D HEM 501 B 1 HETATM 39 N NA HEM . . . F 2 -42.448 11.021 28.947 1 25.92 ? NA HEM 501 B 1 HETATM 40 N NB HEM . . . F 2 -40.093 12.447 29.45 1 31.2 ? NB HEM 501 B 1 HETATM 41 N NC HEM . . . F 2 -38.577 10.214 28.268 1 31.91 ? NC HEM 501 B 1 HETATM 42 N ND HEM . . . F 2 -40.961 8.963 27.853 1 32.78 ? ND HEM 501 B 1 HETATM 43 FE FE HEM . . . F 2 -40.542 10.596 28.662 1 35.53 ? FE HEM 501 B 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 397 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #