data_5IXX # _model_server_result.job_id 87JXHi5jI22YbnBFiqf8Pg _model_server_result.datetime_utc '2024-12-02 11:31:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ixx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":502}' # _entry.id 5IXX # _exptl.entry_id 5IXX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 110.114 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(1H-imidazol-1-yl)ethan-1-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IXX _cell.length_a 122.349 _cell.length_b 122.349 _cell.length_c 122.349 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IXX _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 105 A HIS 105 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? metalc ? metalc2 C FE HEM . A HEM 201 1_555 D NAF 6EX . A 6EX 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? metalc ? metalc3 B NE2 HIS 105 B HIS 105 1_555 F FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? metalc ? metalc4 F FE HEM . B HEM 501 1_555 G NAF 6EX . B 6EX 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? # _chem_comp.formula 'C5 H6 N2 O' _chem_comp.formula_weight 110.114 _chem_comp.id 6EX _chem_comp.mon_nstd_flag . _chem_comp.name 1-(1H-imidazol-1-yl)ethan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAB CAG 6EX doub 1 n n CAG CAA 6EX sing 2 n n CAG NAH 6EX sing 3 n n CAD NAH 6EX sing 4 n y CAD CAC 6EX doub 5 n y NAH CAE 6EX sing 6 n y CAC NAF 6EX sing 7 n y CAE NAF 6EX doub 8 n y CAA H1 6EX sing 9 n n CAA H2 6EX sing 10 n n CAA H3 6EX sing 11 n n CAD H4 6EX sing 12 n n CAC H5 6EX sing 13 n n CAE H6 6EX sing 14 n n # _atom_sites.entry_id 5IXX _atom_sites.fract_transf_matrix[1][1] 0.008173 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008173 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008173 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 201 500 HEM HEM . D 3 6EX A 1 202 1 6EX DRG . E 4 MLI A 1 203 1 MLI MLI . F 2 HEM B 1 501 501 HEM HEM . G 3 6EX B 1 502 1 6EX DRG . H 5 HOH A 1 301 50 HOH HOH . H 5 HOH A 2 302 58 HOH HOH . H 5 HOH A 3 303 30 HOH HOH . H 5 HOH A 4 304 34 HOH HOH . H 5 HOH A 5 305 107 HOH HOH . H 5 HOH A 6 306 62 HOH HOH . H 5 HOH A 7 307 2 HOH HOH . H 5 HOH A 8 308 85 HOH HOH . H 5 HOH A 9 309 10 HOH HOH . H 5 HOH A 10 310 51 HOH HOH . H 5 HOH A 11 311 1 HOH HOH . H 5 HOH A 12 312 68 HOH HOH . H 5 HOH A 13 313 45 HOH HOH . H 5 HOH A 14 314 15 HOH HOH . H 5 HOH A 15 315 57 HOH HOH . H 5 HOH A 16 316 5 HOH HOH . H 5 HOH A 17 317 109 HOH HOH . H 5 HOH A 18 318 93 HOH HOH . H 5 HOH A 19 319 63 HOH HOH . H 5 HOH A 20 320 61 HOH HOH . H 5 HOH A 21 321 69 HOH HOH . H 5 HOH A 22 322 60 HOH HOH . H 5 HOH A 23 323 22 HOH HOH . H 5 HOH A 24 324 11 HOH HOH . H 5 HOH A 25 325 47 HOH HOH . H 5 HOH A 26 326 18 HOH HOH . H 5 HOH A 27 327 74 HOH HOH . H 5 HOH A 28 328 90 HOH HOH . H 5 HOH A 29 329 100 HOH HOH . H 5 HOH A 30 330 13 HOH HOH . H 5 HOH A 31 331 6 HOH HOH . H 5 HOH A 32 332 53 HOH HOH . H 5 HOH A 33 333 72 HOH HOH . H 5 HOH A 34 334 97 HOH HOH . H 5 HOH A 35 335 16 HOH HOH . H 5 HOH A 36 336 70 HOH HOH . H 5 HOH A 37 337 78 HOH HOH . H 5 HOH A 38 338 108 HOH HOH . H 5 HOH A 39 339 99 HOH HOH . H 5 HOH A 40 340 59 HOH HOH . H 5 HOH A 41 341 44 HOH HOH . H 5 HOH A 42 342 40 HOH HOH . H 5 HOH A 43 343 81 HOH HOH . H 5 HOH A 44 344 42 HOH HOH . H 5 HOH A 45 345 88 HOH HOH . H 5 HOH A 46 346 7 HOH HOH . H 5 HOH A 47 347 21 HOH HOH . H 5 HOH A 48 348 56 HOH HOH . I 5 HOH B 1 601 26 HOH HOH . I 5 HOH B 2 602 41 HOH HOH . I 5 HOH B 3 603 82 HOH HOH . I 5 HOH B 4 604 37 HOH HOH . I 5 HOH B 5 605 89 HOH HOH . I 5 HOH B 6 606 23 HOH HOH . I 5 HOH B 7 607 95 HOH HOH . I 5 HOH B 8 608 64 HOH HOH . I 5 HOH B 9 609 73 HOH HOH . I 5 HOH B 10 610 14 HOH HOH . I 5 HOH B 11 611 8 HOH HOH . I 5 HOH B 12 612 9 HOH HOH . I 5 HOH B 13 613 92 HOH HOH . I 5 HOH B 14 614 46 HOH HOH . I 5 HOH B 15 615 29 HOH HOH . I 5 HOH B 16 616 4 HOH HOH . I 5 HOH B 17 617 19 HOH HOH . I 5 HOH B 18 618 43 HOH HOH . I 5 HOH B 19 619 54 HOH HOH . I 5 HOH B 20 620 28 HOH HOH . I 5 HOH B 21 621 67 HOH HOH . I 5 HOH B 22 622 35 HOH HOH . I 5 HOH B 23 623 27 HOH HOH . I 5 HOH B 24 624 103 HOH HOH . I 5 HOH B 25 625 91 HOH HOH . I 5 HOH B 26 626 24 HOH HOH . I 5 HOH B 27 627 106 HOH HOH . I 5 HOH B 28 628 55 HOH HOH . I 5 HOH B 29 629 94 HOH HOH . I 5 HOH B 30 630 33 HOH HOH . I 5 HOH B 31 631 65 HOH HOH . I 5 HOH B 32 632 96 HOH HOH . I 5 HOH B 33 633 20 HOH HOH . I 5 HOH B 34 634 12 HOH HOH . I 5 HOH B 35 635 38 HOH HOH . I 5 HOH B 36 636 25 HOH HOH . I 5 HOH B 37 637 80 HOH HOH . I 5 HOH B 38 638 49 HOH HOH . I 5 HOH B 39 639 17 HOH HOH . I 5 HOH B 40 640 87 HOH HOH . I 5 HOH B 41 641 86 HOH HOH . I 5 HOH B 42 642 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 6EX . . . G 3 -43.623 10.719 24.267 0.65 46.9 ? CAA 6EX 502 B 1 HETATM 2 C CAG 6EX . . . G 3 -42.149 10.991 24.16 0.65 44.91 ? CAG 6EX 502 B 1 HETATM 3 O OAB 6EX . . . G 3 -41.529 11.049 23.097 0.65 82.2 ? OAB 6EX 502 B 1 HETATM 4 N NAH 6EX . . . G 3 -41.532 11.24 25.297 0.65 56.88 ? NAH 6EX 502 B 1 HETATM 5 C CAD 6EX . . . G 3 -40.314 10.748 25.195 0.65 59.56 ? CAD 6EX 502 B 1 HETATM 6 C CAC 6EX . . . G 3 -39.746 11.038 26.357 0.65 62.2 ? CAC 6EX 502 B 1 HETATM 7 N NAF 6EX . . . G 3 -40.559 11.717 27.17 0.65 59.59 ? NAF 6EX 502 B 1 HETATM 8 C CAE 6EX . . . G 3 -41.691 11.836 26.477 0.65 60.22 ? CAE 6EX 502 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 8 #