data_5IXY # _model_server_result.job_id PO8PwFso0rQKmCR_HYzsQA _model_server_result.datetime_utc '2024-11-08 10:03:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ixy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":401}' # _entry.id 5IXY # _exptl.entry_id 5IXY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.9 _cell.angle_gamma 90 _cell.entry_id 5IXY _cell.length_a 78.452 _cell.length_b 80.696 _cell.length_c 102.236 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IXY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 I N N ? 2 N N N ? 2 R N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 295 n n PA O2A NAD sing 296 n n PA O5B NAD sing 297 n n PA O3 NAD sing 298 n n O2A HOA2 NAD sing 299 n n O5B C5B NAD sing 300 n n C5B C4B NAD sing 301 n n C5B H51A NAD sing 302 n n C5B H52A NAD sing 303 n n C4B O4B NAD sing 304 n n C4B C3B NAD sing 305 n n C4B H4B NAD sing 306 n n O4B C1B NAD sing 307 n n C3B O3B NAD sing 308 n n C3B C2B NAD sing 309 n n C3B H3B NAD sing 310 n n O3B HO3A NAD sing 311 n n C2B O2B NAD sing 312 n n C2B C1B NAD sing 313 n n C2B H2B NAD sing 314 n n O2B HO2A NAD sing 315 n n C1B N9A NAD sing 316 n n C1B H1B NAD sing 317 n n N9A C8A NAD sing 318 n y N9A C4A NAD sing 319 n y C8A N7A NAD doub 320 n y C8A H8A NAD sing 321 n n N7A C5A NAD sing 322 n y C5A C6A NAD sing 323 n y C5A C4A NAD doub 324 n y C6A N6A NAD sing 325 n n C6A N1A NAD doub 326 n y N6A H61A NAD sing 327 n n N6A H62A NAD sing 328 n n N1A C2A NAD sing 329 n y C2A N3A NAD doub 330 n y C2A H2A NAD sing 331 n n N3A C4A NAD sing 332 n y O3 PN NAD sing 333 n n PN O1N NAD doub 334 n n PN O2N NAD sing 335 n n PN O5D NAD sing 336 n n O5D C5D NAD sing 337 n n C5D C4D NAD sing 338 n n C5D H51N NAD sing 339 n n C5D H52N NAD sing 340 n n C4D O4D NAD sing 341 n n C4D C3D NAD sing 342 n n C4D H4D NAD sing 343 n n O4D C1D NAD sing 344 n n C3D O3D NAD sing 345 n n C3D C2D NAD sing 346 n n C3D H3D NAD sing 347 n n O3D HO3N NAD sing 348 n n C2D O2D NAD sing 349 n n C2D C1D NAD sing 350 n n C2D H2D NAD sing 351 n n O2D HO2N NAD sing 352 n n C1D N1N NAD sing 353 n n C1D H1D NAD sing 354 n n N1N C2N NAD sing 355 n y N1N C6N NAD doub 356 n y C2N C3N NAD doub 357 n y C2N H2N NAD sing 358 n n C3N C7N NAD sing 359 n n C3N C4N NAD sing 360 n y C7N O7N NAD doub 361 n n C7N N7N NAD sing 362 n n N7N H71N NAD sing 363 n n N7N H72N NAD sing 364 n n C4N C5N NAD doub 365 n y C4N H4N NAD sing 366 n n C5N C6N NAD sing 367 n y C5N H5N NAD sing 368 n n C6N H6N NAD sing 369 n n # _atom_sites.entry_id 5IXY _atom_sites.fract_transf_matrix[1][1] 0.012747 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001768 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012392 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009875 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 401 800 NAD NAI . F 3 SO4 A 1 402 3 SO4 SO4 . G 3 SO4 A 1 403 7 SO4 SO4 . H 4 GN2 A 1 404 1 GN2 DRG . I 2 NAD B 1 401 800 NAD NAI . J 3 SO4 B 1 402 1 SO4 SO4 . K 3 SO4 B 1 403 2 SO4 SO4 . L 3 SO4 B 1 404 5 SO4 SO4 . M 4 GN2 B 1 405 1 GN2 DRG . N 2 NAD C 1 401 800 NAD NAI . O 3 SO4 C 1 402 4 SO4 SO4 . P 3 SO4 C 1 403 6 SO4 SO4 . Q 4 GN2 C 1 404 1 GN2 DRG . R 2 NAD D 1 401 800 NAD NAI . S 4 GN2 D 1 402 1 GN2 DRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . I 2 44.307 -8.327 19.488 1 44.15 ? PA NAD 401 B 1 HETATM 2 O O1A NAD . . . I 2 44.158 -6.821 19.468 1 43.27 ? O1A NAD 401 B 1 HETATM 3 O O2A NAD . . . I 2 45.601 -9.012 19.1 1 44.68 ? O2A NAD 401 B 1 HETATM 4 O O5B NAD . . . I 2 43.742 -8.871 20.918 1 44.21 ? O5B NAD 401 B 1 HETATM 5 C C5B NAD . . . I 2 44.43 -9.913 21.594 1 45.08 ? C5B NAD 401 B 1 HETATM 6 C C4B NAD . . . I 2 44.523 -9.53 23.057 1 45.7 ? C4B NAD 401 B 1 HETATM 7 O O4B NAD . . . I 2 44.817 -10.692 23.833 1 46.44 ? O4B NAD 401 B 1 HETATM 8 C C3B NAD . . . I 2 45.637 -8.528 23.287 1 45.09 ? C3B NAD 401 B 1 HETATM 9 O O3B NAD . . . I 2 45.082 -7.418 23.985 1 44.03 ? O3B NAD 401 B 1 HETATM 10 C C2B NAD . . . I 2 46.626 -9.264 24.154 1 45.76 ? C2B NAD 401 B 1 HETATM 11 O O2B NAD . . . I 2 47.201 -8.422 25.134 1 46.49 ? O2B NAD 401 B 1 HETATM 12 C C1B NAD . . . I 2 45.747 -10.28 24.826 1 46.25 ? C1B NAD 401 B 1 HETATM 13 N N9A NAD . . . I 2 46.46 -11.405 25.408 1 45.86 ? N9A NAD 401 B 1 HETATM 14 C C8A NAD . . . I 2 47.542 -12.054 24.889 1 45.05 ? C8A NAD 401 B 1 HETATM 15 N N7A NAD . . . I 2 47.959 -13.008 25.698 1 45.38 ? N7A NAD 401 B 1 HETATM 16 C C5A NAD . . . I 2 47.108 -12.97 26.771 1 46.1 ? C5A NAD 401 B 1 HETATM 17 C C6A NAD . . . I 2 47.049 -13.745 27.917 1 46.79 ? C6A NAD 401 B 1 HETATM 18 N N6A NAD . . . I 2 47.976 -14.775 28.144 1 46.65 ? N6A NAD 401 B 1 HETATM 19 N N1A NAD . . . I 2 46.083 -13.461 28.805 1 46.31 ? N1A NAD 401 B 1 HETATM 20 C C2A NAD . . . I 2 45.23 -12.465 28.535 1 45.14 ? C2A NAD 401 B 1 HETATM 21 N N3A NAD . . . I 2 45.183 -11.667 27.464 1 45.32 ? N3A NAD 401 B 1 HETATM 22 C C4A NAD . . . I 2 46.169 -11.976 26.614 1 46.19 ? C4A NAD 401 B 1 HETATM 23 O O3 NAD . . . I 2 43.148 -8.985 18.551 1 44.09 ? O3 NAD 401 B 1 HETATM 24 P PN NAD . . . I 2 41.517 -8.857 18.568 1 42.76 ? PN NAD 401 B 1 HETATM 25 O O1N NAD . . . I 2 40.992 -8.616 19.968 1 41.02 ? O1N NAD 401 B 1 HETATM 26 O O2N NAD . . . I 2 41.141 -7.935 17.431 1 42.57 ? O2N NAD 401 B 1 HETATM 27 O O5D NAD . . . I 2 41.182 -10.39 18.114 1 43.62 ? O5D NAD 401 B 1 HETATM 28 C C5D NAD . . . I 2 41.556 -11.418 19.023 1 46.38 ? C5D NAD 401 B 1 HETATM 29 C C4D NAD . . . I 2 41.076 -12.772 18.557 1 50.88 ? C4D NAD 401 B 1 HETATM 30 O O4D NAD . . . I 2 39.696 -12.719 18.166 1 53.67 ? O4D NAD 401 B 1 HETATM 31 C C3D NAD . . . I 2 41.895 -13.248 17.378 1 52.23 ? C3D NAD 401 B 1 HETATM 32 O O3D NAD . . . I 2 42.349 -14.561 17.689 1 51.65 ? O3D NAD 401 B 1 HETATM 33 C C2D NAD . . . I 2 40.891 -13.274 16.253 1 54.33 ? C2D NAD 401 B 1 HETATM 34 O O2D NAD . . . I 2 41.166 -14.298 15.315 1 54.82 ? O2D NAD 401 B 1 HETATM 35 C C1D NAD . . . I 2 39.598 -13.519 16.994 1 54.79 ? C1D NAD 401 B 1 HETATM 36 N N1N NAD . . . I 2 38.395 -13.259 16.207 1 55.99 ? N1N NAD 401 B 1 HETATM 37 C C2N NAD . . . I 2 37.528 -14.266 16.125 1 56.56 ? C2N NAD 401 B 1 HETATM 38 C C3N NAD . . . I 2 36.361 -14.119 15.404 1 56.68 ? C3N NAD 401 B 1 HETATM 39 C C7N NAD . . . I 2 35.407 -15.239 15.315 1 57.93 ? C7N NAD 401 B 1 HETATM 40 O O7N NAD . . . I 2 34.473 -15.193 14.527 1 59.41 ? O7N NAD 401 B 1 HETATM 41 N N7N NAD . . . I 2 35.656 -16.278 16.178 1 57.13 ? N7N NAD 401 B 1 HETATM 42 C C4N NAD . . . I 2 36.088 -12.923 14.769 1 55.51 ? C4N NAD 401 B 1 HETATM 43 C C5N NAD . . . I 2 37.002 -11.894 14.877 1 55.6 ? C5N NAD 401 B 1 HETATM 44 C C6N NAD . . . I 2 38.159 -12.087 15.61 1 56.08 ? C6N NAD 401 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 44 #