data_5IXY
#
_model_server_result.job_id            XB05XNQqCXVtl7G6Fx_9vg 
_model_server_result.datetime_utc      '2024-11-08 10:09:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ixy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":401}' 
#
_entry.id    5IXY 
#
_exptl.entry_id    5IXY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.9 
_cell.angle_gamma         90 
_cell.entry_id            5IXY 
_cell.length_a            78.452 
_cell.length_b            80.696 
_cell.length_c            102.236 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5IXY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 I N N 
? 2 N N N 
? 2 R N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 295 n n 
PA O2A NAD sing 296 n n 
PA O5B NAD sing 297 n n 
PA O3 NAD sing 298 n n 
O2A HOA2 NAD sing 299 n n 
O5B C5B NAD sing 300 n n 
C5B C4B NAD sing 301 n n 
C5B H51A NAD sing 302 n n 
C5B H52A NAD sing 303 n n 
C4B O4B NAD sing 304 n n 
C4B C3B NAD sing 305 n n 
C4B H4B NAD sing 306 n n 
O4B C1B NAD sing 307 n n 
C3B O3B NAD sing 308 n n 
C3B C2B NAD sing 309 n n 
C3B H3B NAD sing 310 n n 
O3B HO3A NAD sing 311 n n 
C2B O2B NAD sing 312 n n 
C2B C1B NAD sing 313 n n 
C2B H2B NAD sing 314 n n 
O2B HO2A NAD sing 315 n n 
C1B N9A NAD sing 316 n n 
C1B H1B NAD sing 317 n n 
N9A C8A NAD sing 318 n y 
N9A C4A NAD sing 319 n y 
C8A N7A NAD doub 320 n y 
C8A H8A NAD sing 321 n n 
N7A C5A NAD sing 322 n y 
C5A C6A NAD sing 323 n y 
C5A C4A NAD doub 324 n y 
C6A N6A NAD sing 325 n n 
C6A N1A NAD doub 326 n y 
N6A H61A NAD sing 327 n n 
N6A H62A NAD sing 328 n n 
N1A C2A NAD sing 329 n y 
C2A N3A NAD doub 330 n y 
C2A H2A NAD sing 331 n n 
N3A C4A NAD sing 332 n y 
O3 PN NAD sing 333 n n 
PN O1N NAD doub 334 n n 
PN O2N NAD sing 335 n n 
PN O5D NAD sing 336 n n 
O5D C5D NAD sing 337 n n 
C5D C4D NAD sing 338 n n 
C5D H51N NAD sing 339 n n 
C5D H52N NAD sing 340 n n 
C4D O4D NAD sing 341 n n 
C4D C3D NAD sing 342 n n 
C4D H4D NAD sing 343 n n 
O4D C1D NAD sing 344 n n 
C3D O3D NAD sing 345 n n 
C3D C2D NAD sing 346 n n 
C3D H3D NAD sing 347 n n 
O3D HO3N NAD sing 348 n n 
C2D O2D NAD sing 349 n n 
C2D C1D NAD sing 350 n n 
C2D H2D NAD sing 351 n n 
O2D HO2N NAD sing 352 n n 
C1D N1N NAD sing 353 n n 
C1D H1D NAD sing 354 n n 
N1N C2N NAD sing 355 n y 
N1N C6N NAD doub 356 n y 
C2N C3N NAD doub 357 n y 
C2N H2N NAD sing 358 n n 
C3N C7N NAD sing 359 n n 
C3N C4N NAD sing 360 n y 
C7N O7N NAD doub 361 n n 
C7N N7N NAD sing 362 n n 
N7N H71N NAD sing 363 n n 
N7N H72N NAD sing 364 n n 
C4N C5N NAD doub 365 n y 
C4N H4N NAD sing 366 n n 
C5N C6N NAD sing 367 n y 
C5N H5N NAD sing 368 n n 
C6N H6N NAD sing 369 n n 
#
_atom_sites.entry_id                     5IXY 
_atom_sites.fract_transf_matrix[1][1]    0.012747 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001768 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012392 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009875 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAD A 1 401 800 NAD NAI . 
F 3 SO4 A 1 402 3 SO4 SO4 . 
G 3 SO4 A 1 403 7 SO4 SO4 . 
H 4 GN2 A 1 404 1 GN2 DRG . 
I 2 NAD B 1 401 800 NAD NAI . 
J 3 SO4 B 1 402 1 SO4 SO4 . 
K 3 SO4 B 1 403 2 SO4 SO4 . 
L 3 SO4 B 1 404 5 SO4 SO4 . 
M 4 GN2 B 1 405 1 GN2 DRG . 
N 2 NAD C 1 401 800 NAD NAI . 
O 3 SO4 C 1 402 4 SO4 SO4 . 
P 3 SO4 C 1 403 6 SO4 SO4 . 
Q 4 GN2 C 1 404 1 GN2 DRG . 
R 2 NAD D 1 401 800 NAD NAI . 
S 4 GN2 D 1 402 1 GN2 DRG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . N 2 -7.615 -5.305 43.621 1 45.51 ? PA NAD 401 C 1 
HETATM 2 O O1A NAD . . . N 2 -8.065 -5.437 42.184 1 44.37 ? O1A NAD 401 C 1 
HETATM 3 O O2A NAD . . . N 2 -8.61 -5.325 44.764 1 46.87 ? O2A NAD 401 C 1 
HETATM 4 O O5B NAD . . . N 2 -6.374 -6.346 43.86 1 45 ? O5B NAD 401 C 1 
HETATM 5 C C5B NAD . . . N 2 -6.28 -7.093 45.067 1 44.82 ? C5B NAD 401 C 1 
HETATM 6 C C4B NAD . . . N 2 -5.929 -8.518 44.705 1 45.88 ? C4B NAD 401 C 1 
HETATM 7 O O4B NAD . . . N 2 -5.437 -9.191 45.862 1 48.15 ? O4B NAD 401 C 1 
HETATM 8 C C3B NAD . . . N 2 -7.147 -9.268 44.22 1 46.3 ? C3B NAD 401 C 1 
HETATM 9 O O3B NAD . . . N 2 -6.812 -9.84 42.964 1 44.83 ? O3B NAD 401 C 1 
HETATM 10 C C2B NAD . . . N 2 -7.358 -10.34 45.255 1 49.23 ? C2B NAD 401 C 1 
HETATM 11 O O2B NAD . . . N 2 -7.79 -11.567 44.686 1 50.9 ? O2B NAD 401 C 1 
HETATM 12 C C1B NAD . . . N 2 -5.973 -10.504 45.815 1 49.9 ? C1B NAD 401 C 1 
HETATM 13 N N9A NAD . . . N 2 -5.922 -11.159 47.113 1 51.61 ? N9A NAD 401 C 1 
HETATM 14 C C8A NAD . . . N 2 -6.788 -10.999 48.156 1 52.09 ? C8A NAD 401 C 1 
HETATM 15 N N7A NAD . . . N 2 -6.468 -11.775 49.169 1 52.3 ? N7A NAD 401 C 1 
HETATM 16 C C5A NAD . . . N 2 -5.352 -12.458 48.758 1 52 ? C5A NAD 401 C 1 
HETATM 17 C C6A NAD . . . N 2 -4.568 -13.397 49.408 1 51.97 ? C6A NAD 401 C 1 
HETATM 18 N N6A NAD . . . N 2 -4.875 -13.81 50.707 1 51.7 ? N6A NAD 401 C 1 
HETATM 19 N N1A NAD . . . N 2 -3.519 -13.898 48.736 1 52.37 ? N1A NAD 401 C 1 
HETATM 20 C C2A NAD . . . N 2 -3.282 -13.454 47.494 1 52.56 ? C2A NAD 401 C 1 
HETATM 21 N N3A NAD . . . N 2 -3.957 -12.551 46.777 1 52.4 ? N3A NAD 401 C 1 
HETATM 22 C C4A NAD . . . N 2 -4.997 -12.093 47.478 1 52.03 ? C4A NAD 401 C 1 
HETATM 23 O O3 NAD . . . N 2 -6.749 -3.943 43.802 1 44.72 ? O3 NAD 401 C 1 
HETATM 24 P PN NAD . . . N 2 -5.415 -3.399 43.036 1 43.97 ? PN NAD 401 C 1 
HETATM 25 O O1N NAD . . . N 2 -5.951 -2.39 42.051 1 44.02 ? O1N NAD 401 C 1 
HETATM 26 O O2N NAD . . . N 2 -4.471 -4.511 42.597 1 41.92 ? O2N NAD 401 C 1 
HETATM 27 O O5D NAD . . . N 2 -4.724 -2.64 44.309 1 43 ? O5D NAD 401 C 1 
HETATM 28 C C5D NAD . . . N 2 -4.28 -3.482 45.368 1 42.23 ? C5D NAD 401 C 1 
HETATM 29 C C4D NAD . . . N 2 -3.559 -2.702 46.441 1 41.74 ? C4D NAD 401 C 1 
HETATM 30 O O4D NAD . . . N 2 -2.578 -1.844 45.852 1 40.75 ? O4D NAD 401 C 1 
HETATM 31 C C3D NAD . . . N 2 -4.536 -1.858 47.246 1 41.89 ? C3D NAD 401 C 1 
HETATM 32 O O3D NAD . . . N 2 -4.314 -2.133 48.63 1 41.66 ? O3D NAD 401 C 1 
HETATM 33 C C2D NAD . . . N 2 -4.137 -0.444 46.895 1 40.96 ? C2D NAD 401 C 1 
HETATM 34 O O2D NAD . . . N 2 -4.355 0.452 47.971 1 39.08 ? O2D NAD 401 C 1 
HETATM 35 C C1D NAD . . . N 2 -2.664 -0.622 46.582 1 40.82 ? C1D NAD 401 C 1 
HETATM 36 N N1N NAD . . . N 2 -2.06 0.51 45.892 1 39.19 ? N1N NAD 401 C 1 
HETATM 37 C C2N NAD . . . N 2 -0.983 1.03 46.476 1 38.93 ? C2N NAD 401 C 1 
HETATM 38 C C3N NAD . . . N 2 -0.346 2.108 45.898 1 38.68 ? C3N NAD 401 C 1 
HETATM 39 C C7N NAD . . . N 2 0.839 2.688 46.552 1 36.86 ? C7N NAD 401 C 1 
HETATM 40 O O7N NAD . . . N 2 1.29 3.756 46.16 1 37.98 ? O7N NAD 401 C 1 
HETATM 41 N N7N NAD . . . N 2 1.356 1.937 47.582 1 34.51 ? N7N NAD 401 C 1 
HETATM 42 C C4N NAD . . . N 2 -0.824 2.642 44.712 1 38.69 ? C4N NAD 401 C 1 
HETATM 43 C C5N NAD . . . N 2 -1.937 2.075 44.122 1 38.13 ? C5N NAD 401 C 1 
HETATM 44 C C6N NAD . . . N 2 -2.541 0.997 44.742 1 38.78 ? C6N NAD 401 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           44 
#