data_5IXY
#
_model_server_result.job_id            3HhKh-733EylEQatY3jjWg 
_model_server_result.datetime_utc      '2024-11-08 09:50:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ixy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":404}' 
#
_entry.id    5IXY 
#
_exptl.entry_id    5IXY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              499.045 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2~{S})-5-(2-chlorophenyl)sulfanyl-2-(4-morpholin-4-ylphenyl)-4-oxidanyl-2-thiophen-3-yl-1,3-dihydropyridin-6-one 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.9 
_cell.angle_gamma         90 
_cell.entry_id            5IXY 
_cell.length_a            78.452 
_cell.length_b            80.696 
_cell.length_c            102.236 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5IXY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 M N N 
? 4 Q N N 
? 4 S N N 
#
_chem_comp.formula           'C25 H23 Cl N2 O3 S2' 
_chem_comp.formula_weight    499.045 
_chem_comp.id                GN2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2~{S})-5-(2-chlorophenyl)sulfanyl-2-(4-morpholin-4-ylphenyl)-4-oxidanyl-2-thiophen-3-yl-1,3-dihydropyridin-6-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O31 C30 GN2 sing 129 n n 
O31 C32 GN2 sing 130 n n 
C30 C29 GN2 sing 131 n n 
C29 N7 GN2 sing 132 n n 
C32 C33 GN2 sing 133 n n 
N7 C33 GN2 sing 134 n n 
N7 C2 GN2 sing 135 n n 
C2 C1 GN2 doub 136 n y 
C2 C3 GN2 sing 137 n y 
C1 C6 GN2 sing 138 n y 
C3 C4 GN2 doub 139 n y 
C6 C5 GN2 doub 140 n y 
C4 C5 GN2 sing 141 n y 
C5 C8 GN2 sing 142 n n 
N14 C8 GN2 sing 143 n n 
N14 C15 GN2 sing 144 n n 
C8 C18 GN2 sing 145 n n 
C8 C9 GN2 sing 146 n n 
O20 C15 GN2 doub 147 n n 
C15 C16 GN2 sing 148 n n 
C18 C17 GN2 sing 149 n n 
C9 C10 GN2 doub 150 n y 
C9 C13 GN2 sing 151 n y 
C10 S11 GN2 sing 152 n y 
C16 C17 GN2 doub 153 n n 
C16 S21 GN2 sing 154 n n 
C17 O19 GN2 sing 155 n n 
C13 C12 GN2 doub 156 n y 
S11 C12 GN2 sing 157 n y 
S21 C22 GN2 sing 158 n n 
C23 C22 GN2 doub 159 n y 
C23 C24 GN2 sing 160 n y 
C22 C27 GN2 sing 161 n y 
C24 C25 GN2 doub 162 n y 
C27 CL GN2 sing 163 n n 
C27 C26 GN2 doub 164 n y 
C25 C26 GN2 sing 165 n y 
C4 H1 GN2 sing 166 n n 
C6 H2 GN2 sing 167 n n 
C10 H3 GN2 sing 168 n n 
C12 H4 GN2 sing 169 n n 
C13 H5 GN2 sing 170 n n 
C3 H6 GN2 sing 171 n n 
C1 H7 GN2 sing 172 n n 
N14 H8 GN2 sing 173 n n 
C18 H10 GN2 sing 174 n n 
C18 H11 GN2 sing 175 n n 
C23 H12 GN2 sing 176 n n 
C24 H13 GN2 sing 177 n n 
C25 H14 GN2 sing 178 n n 
C26 H15 GN2 sing 179 n n 
C29 H16 GN2 sing 180 n n 
C29 H17 GN2 sing 181 n n 
C30 H18 GN2 sing 182 n n 
C30 H19 GN2 sing 183 n n 
C32 H20 GN2 sing 184 n n 
C32 H21 GN2 sing 185 n n 
C33 H22 GN2 sing 186 n n 
C33 H23 GN2 sing 187 n n 
O19 H9 GN2 sing 188 n n 
#
_atom_sites.entry_id                     5IXY 
_atom_sites.fract_transf_matrix[1][1]    0.012747 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001768 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012392 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009875 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAD A 1 401 800 NAD NAI . 
F 3 SO4 A 1 402 3 SO4 SO4 . 
G 3 SO4 A 1 403 7 SO4 SO4 . 
H 4 GN2 A 1 404 1 GN2 DRG . 
I 2 NAD B 1 401 800 NAD NAI . 
J 3 SO4 B 1 402 1 SO4 SO4 . 
K 3 SO4 B 1 403 2 SO4 SO4 . 
L 3 SO4 B 1 404 5 SO4 SO4 . 
M 4 GN2 B 1 405 1 GN2 DRG . 
N 2 NAD C 1 401 800 NAD NAI . 
O 3 SO4 C 1 402 4 SO4 SO4 . 
P 3 SO4 C 1 403 6 SO4 SO4 . 
Q 4 GN2 C 1 404 1 GN2 DRG . 
R 2 NAD D 1 401 800 NAD NAI . 
S 4 GN2 D 1 402 1 GN2 DRG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 GN2 . . . H 4 43.368 14.062 24.029 1 56.14 ? C4 GN2 404 A 1 
HETATM 2 C C5 GN2 . . . H 4 42.048 13.71 24.258 1 56.77 ? C5 GN2 404 A 1 
HETATM 3 C C6 GN2 . . . H 4 41.425 12.906 23.317 1 55.66 ? C6 GN2 404 A 1 
HETATM 4 C C8 GN2 . . . H 4 41.274 14.181 25.469 1 57 ? C8 GN2 404 A 1 
HETATM 5 C C9 GN2 . . . H 4 42.216 14.778 26.46 1 55.92 ? C9 GN2 404 A 1 
HETATM 6 C C10 GN2 . . . H 4 42.563 16.115 26.503 1 55.88 ? C10 GN2 404 A 1 
HETATM 7 C C12 GN2 . . . H 4 43.67 14.88 28.307 1 55.25 ? C12 GN2 404 A 1 
HETATM 8 C C13 GN2 . . . H 4 42.869 14.088 27.519 1 55.19 ? C13 GN2 404 A 1 
HETATM 9 C C3 GN2 . . . H 4 44.041 13.621 22.908 1 55.42 ? C3 GN2 404 A 1 
HETATM 10 C C1 GN2 . . . H 4 42.1 12.456 22.202 1 55.39 ? C1 GN2 404 A 1 
HETATM 11 C C2 GN2 . . . H 4 43.421 12.806 21.978 1 55.33 ? C2 GN2 404 A 1 
HETATM 12 N N7 GN2 . . . H 4 44.113 12.348 20.832 1 54.9 ? N7 GN2 404 A 1 
HETATM 13 S S11 GN2 . . . H 4 43.65 16.508 27.77 1 56.08 ? S11 GN2 404 A 1 
HETATM 14 N N14 GN2 . . . H 4 40.357 15.228 25.099 1 57.03 ? N14 GN2 404 A 1 
HETATM 15 C C15 GN2 . . . H 4 39.241 15.553 25.841 1 57.84 ? C15 GN2 404 A 1 
HETATM 16 C C16 GN2 . . . H 4 38.981 14.703 27.029 1 58.37 ? C16 GN2 404 A 1 
HETATM 17 C C17 GN2 . . . H 4 39.538 13.493 27.11 1 58.8 ? C17 GN2 404 A 1 
HETATM 18 C C18 GN2 . . . H 4 40.468 13.029 26.048 1 57.88 ? C18 GN2 404 A 1 
HETATM 19 O O19 GN2 . . . H 4 39.449 12.618 27.997 1 60.4 ? O19 GN2 404 A 1 
HETATM 20 O O20 GN2 . . . H 4 38.472 16.452 25.545 1 57.9 ? O20 GN2 404 A 1 
HETATM 21 S S21 GN2 . . . H 4 37.879 15.273 28.217 1 59.05 ? S21 GN2 404 A 1 
HETATM 22 C C22 GN2 . . . H 4 38.885 16.153 29.379 1 58.1 ? C22 GN2 404 A 1 
HETATM 23 C C23 GN2 . . . H 4 40.168 16.555 29.062 1 56.58 ? C23 GN2 404 A 1 
HETATM 24 C C24 GN2 . . . H 4 40.933 17.24 29.984 1 56.59 ? C24 GN2 404 A 1 
HETATM 25 C C25 GN2 . . . H 4 40.421 17.532 31.23 1 57.51 ? C25 GN2 404 A 1 
HETATM 26 C C26 GN2 . . . H 4 39.139 17.139 31.555 1 58.35 ? C26 GN2 404 A 1 
HETATM 27 C C27 GN2 . . . H 4 38.373 16.453 30.632 1 58.64 ? C27 GN2 404 A 1 
HETATM 28 CL CL GN2 . . . H 4 36.775 15.966 31.09 1 58.66 ? CL GN2 404 A 1 
HETATM 29 C C29 GN2 . . . H 4 43.44 12.334 19.536 1 55.42 ? C29 GN2 404 A 1 
HETATM 30 C C30 GN2 . . . H 4 43.781 11.044 18.816 1 55.85 ? C30 GN2 404 A 1 
HETATM 31 O O31 GN2 . . . H 4 45.205 10.934 18.75 1 55.87 ? O31 GN2 404 A 1 
HETATM 32 C C32 GN2 . . . H 4 45.743 10.694 20.051 1 55.3 ? C32 GN2 404 A 1 
HETATM 33 C C33 GN2 . . . H 4 45.504 11.902 20.936 1 54.57 ? C33 GN2 404 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    49 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           33 
#