data_5IXY
#
_model_server_result.job_id            6Mc3CvglsKo8p32_eWQLyg 
_model_server_result.datetime_utc      '2024-11-08 09:31:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ixy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":405}' 
#
_entry.id    5IXY 
#
_exptl.entry_id    5IXY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              499.045 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2~{S})-5-(2-chlorophenyl)sulfanyl-2-(4-morpholin-4-ylphenyl)-4-oxidanyl-2-thiophen-3-yl-1,3-dihydropyridin-6-one 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.9 
_cell.angle_gamma         90 
_cell.entry_id            5IXY 
_cell.length_a            78.452 
_cell.length_b            80.696 
_cell.length_c            102.236 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5IXY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 M N N 
? 4 Q N N 
? 4 S N N 
#
_chem_comp.formula           'C25 H23 Cl N2 O3 S2' 
_chem_comp.formula_weight    499.045 
_chem_comp.id                GN2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2~{S})-5-(2-chlorophenyl)sulfanyl-2-(4-morpholin-4-ylphenyl)-4-oxidanyl-2-thiophen-3-yl-1,3-dihydropyridin-6-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O31 C30 GN2 sing 129 n n 
O31 C32 GN2 sing 130 n n 
C30 C29 GN2 sing 131 n n 
C29 N7 GN2 sing 132 n n 
C32 C33 GN2 sing 133 n n 
N7 C33 GN2 sing 134 n n 
N7 C2 GN2 sing 135 n n 
C2 C1 GN2 doub 136 n y 
C2 C3 GN2 sing 137 n y 
C1 C6 GN2 sing 138 n y 
C3 C4 GN2 doub 139 n y 
C6 C5 GN2 doub 140 n y 
C4 C5 GN2 sing 141 n y 
C5 C8 GN2 sing 142 n n 
N14 C8 GN2 sing 143 n n 
N14 C15 GN2 sing 144 n n 
C8 C18 GN2 sing 145 n n 
C8 C9 GN2 sing 146 n n 
O20 C15 GN2 doub 147 n n 
C15 C16 GN2 sing 148 n n 
C18 C17 GN2 sing 149 n n 
C9 C10 GN2 doub 150 n y 
C9 C13 GN2 sing 151 n y 
C10 S11 GN2 sing 152 n y 
C16 C17 GN2 doub 153 n n 
C16 S21 GN2 sing 154 n n 
C17 O19 GN2 sing 155 n n 
C13 C12 GN2 doub 156 n y 
S11 C12 GN2 sing 157 n y 
S21 C22 GN2 sing 158 n n 
C23 C22 GN2 doub 159 n y 
C23 C24 GN2 sing 160 n y 
C22 C27 GN2 sing 161 n y 
C24 C25 GN2 doub 162 n y 
C27 CL GN2 sing 163 n n 
C27 C26 GN2 doub 164 n y 
C25 C26 GN2 sing 165 n y 
C4 H1 GN2 sing 166 n n 
C6 H2 GN2 sing 167 n n 
C10 H3 GN2 sing 168 n n 
C12 H4 GN2 sing 169 n n 
C13 H5 GN2 sing 170 n n 
C3 H6 GN2 sing 171 n n 
C1 H7 GN2 sing 172 n n 
N14 H8 GN2 sing 173 n n 
C18 H10 GN2 sing 174 n n 
C18 H11 GN2 sing 175 n n 
C23 H12 GN2 sing 176 n n 
C24 H13 GN2 sing 177 n n 
C25 H14 GN2 sing 178 n n 
C26 H15 GN2 sing 179 n n 
C29 H16 GN2 sing 180 n n 
C29 H17 GN2 sing 181 n n 
C30 H18 GN2 sing 182 n n 
C30 H19 GN2 sing 183 n n 
C32 H20 GN2 sing 184 n n 
C32 H21 GN2 sing 185 n n 
C33 H22 GN2 sing 186 n n 
C33 H23 GN2 sing 187 n n 
O19 H9 GN2 sing 188 n n 
#
_atom_sites.entry_id                     5IXY 
_atom_sites.fract_transf_matrix[1][1]    0.012747 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001768 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012392 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009875 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAD A 1 401 800 NAD NAI . 
F 3 SO4 A 1 402 3 SO4 SO4 . 
G 3 SO4 A 1 403 7 SO4 SO4 . 
H 4 GN2 A 1 404 1 GN2 DRG . 
I 2 NAD B 1 401 800 NAD NAI . 
J 3 SO4 B 1 402 1 SO4 SO4 . 
K 3 SO4 B 1 403 2 SO4 SO4 . 
L 3 SO4 B 1 404 5 SO4 SO4 . 
M 4 GN2 B 1 405 1 GN2 DRG . 
N 2 NAD C 1 401 800 NAD NAI . 
O 3 SO4 C 1 402 4 SO4 SO4 . 
P 3 SO4 C 1 403 6 SO4 SO4 . 
Q 4 GN2 C 1 404 1 GN2 DRG . 
R 2 NAD D 1 401 800 NAD NAI . 
S 4 GN2 D 1 402 1 GN2 DRG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 GN2 . . . M 4 41.763 -11.502 10.979 1 52.28 ? C4 GN2 405 B 1 
HETATM 2 C C5 GN2 . . . M 4 40.569 -11.767 11.625 1 52.94 ? C5 GN2 405 B 1 
HETATM 3 C C6 GN2 . . . M 4 40.457 -11.379 12.947 1 52.78 ? C6 GN2 405 B 1 
HETATM 4 C C8 GN2 . . . M 4 39.387 -12.447 10.978 1 53.77 ? C8 GN2 405 B 1 
HETATM 5 C C9 GN2 . . . M 4 39.735 -12.902 9.606 1 52.57 ? C9 GN2 405 B 1 
HETATM 6 C C10 GN2 . . . M 4 40.245 -14.148 9.309 1 52.21 ? C10 GN2 405 B 1 
HETATM 7 C C12 GN2 . . . M 4 39.927 -12.815 7.266 1 52.12 ? C12 GN2 405 B 1 
HETATM 8 C C13 GN2 . . . M 4 39.553 -12.154 8.41 1 52.09 ? C13 GN2 405 B 1 
HETATM 9 C C3 GN2 . . . M 4 42.796 -10.86 11.635 1 52.69 ? C3 GN2 405 B 1 
HETATM 10 C C1 GN2 . . . M 4 41.489 -10.744 13.601 1 53.12 ? C1 GN2 405 B 1 
HETATM 11 C C2 GN2 . . . M 4 42.68 -10.467 12.959 1 53.24 ? C2 GN2 405 B 1 
HETATM 12 N N7 GN2 . . . M 4 43.725 -9.81 13.66 1 53.26 ? N7 GN2 405 B 1 
HETATM 13 S S11 GN2 . . . M 4 40.508 -14.384 7.633 1 53.01 ? S11 GN2 405 B 1 
HETATM 14 N N14 GN2 . . . M 4 39.037 -13.638 11.711 1 55.56 ? N14 GN2 405 B 1 
HETATM 15 C C15 GN2 . . . M 4 37.783 -14.207 11.7 1 56.06 ? C15 GN2 405 B 1 
HETATM 16 C C16 GN2 . . . M 4 36.74 -13.482 10.929 1 55.77 ? C16 GN2 405 B 1 
HETATM 17 C C17 GN2 . . . M 4 36.933 -12.198 10.618 1 52.5 ? C17 GN2 405 B 1 
HETATM 18 C C18 GN2 . . . M 4 38.193 -11.505 10.985 1 52.94 ? C18 GN2 405 B 1 
HETATM 19 O O19 GN2 . . . M 4 36.201 -11.405 10 1 51.12 ? O19 GN2 405 B 1 
HETATM 20 O O20 GN2 . . . M 4 37.518 -15.227 12.311 1 56.34 ? O20 GN2 405 B 1 
HETATM 21 S S21 GN2 . . . M 4 35.273 -14.305 10.545 1 59.04 ? S21 GN2 405 B 1 
HETATM 22 C C22 GN2 . . . M 4 35.59 -15.061 8.976 1 57.3 ? C22 GN2 405 B 1 
HETATM 23 C C23 GN2 . . . M 4 36.877 -15.235 8.504 1 56.79 ? C23 GN2 405 B 1 
HETATM 24 C C24 GN2 . . . M 4 37.099 -15.826 7.277 1 57.01 ? C24 GN2 405 B 1 
HETATM 25 C C25 GN2 . . . M 4 36.033 -16.256 6.513 1 56.93 ? C25 GN2 405 B 1 
HETATM 26 C C26 GN2 . . . M 4 34.745 -16.098 6.984 1 56.89 ? C26 GN2 405 B 1 
HETATM 27 C C27 GN2 . . . M 4 34.525 -15.503 8.21 1 56.45 ? C27 GN2 405 B 1 
HETATM 28 CL CL GN2 . . . M 4 32.895 -15.324 8.767 1 54.93 ? CL GN2 405 B 1 
HETATM 29 C C29 GN2 . . . M 4 43.401 -8.762 14.632 1 53.05 ? C29 GN2 405 B 1 
HETATM 30 C C30 GN2 . . . M 4 44.412 -7.633 14.56 1 53.04 ? C30 GN2 405 B 1 
HETATM 31 O O31 GN2 . . . M 4 45.722 -8.193 14.6 1 53.37 ? O31 GN2 405 B 1 
HETATM 32 C C32 GN2 . . . M 4 45.971 -8.932 13.404 1 52.83 ? C32 GN2 405 B 1 
HETATM 33 C C33 GN2 . . . M 4 45.122 -10.185 13.443 1 53.02 ? C33 GN2 405 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           33 
#