data_5IYS # _model_server_result.job_id HU9m1imwsNdpW3ccRQqLQA _model_server_result.datetime_utc '2024-11-02 19:30:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5iys # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 5IYS # _exptl.entry_id 5IYS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.35 _cell.angle_gamma 90 _cell.entry_id 5IYS _cell.length_a 37.238 _cell.length_b 41.09 _cell.length_c 93.477 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IYS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 56 A ASP 56 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc2 A OD2 ASP 56 A ASP 56 1_555 F MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc3 A OD2 ASP 60 A ASP 60 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc4 A OD2 ASP 60 A ASP 60 1_555 F MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc5 A OD1 ASN 169 A ASN 169 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc6 D MG MG . A MG 503 1_555 H O2A FPS . A FPS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? metalc ? metalc7 D MG MG . A MG 503 1_555 I O HOH . A HOH 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc8 D MG MG . A MG 503 1_555 I O HOH . A HOH 642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 ? metalc ? metalc9 E MG MG . A MG 504 1_555 H O1A FPS . A FPS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc10 E MG MG . A MG 504 1_555 I O HOH . A HOH 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc11 E MG MG . A MG 504 1_555 I O HOH . A HOH 662 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc12 E MG MG . A MG 504 1_555 I O HOH . A HOH 734 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc13 F MG MG . A MG 505 1_555 H O1A FPS . A FPS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc14 F MG MG . A MG 505 1_555 H O2B FPS . A FPS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc15 F MG MG . A MG 505 1_555 I O HOH . A HOH 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc16 F MG MG . A MG 505 1_555 I O HOH . A HOH 653 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5IYS _atom_sites.fract_transf_matrix[1][1] 0.026854 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002989 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024337 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010764 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 501 SO4 SO4 . C 2 SO4 A 1 502 502 SO4 SO4 . D 3 MG A 1 503 701 MG MG . E 3 MG A 1 504 702 MG MG . F 3 MG A 1 505 703 MG MG . G 4 FPS A 1 506 901 FPS FPS . H 4 FPS A 1 507 902 FPS FPS . I 5 HOH A 1 601 140 HOH HOH . I 5 HOH A 2 602 196 HOH HOH . I 5 HOH A 3 603 194 HOH HOH . I 5 HOH A 4 604 163 HOH HOH . I 5 HOH A 5 605 168 HOH HOH . I 5 HOH A 6 606 123 HOH HOH . I 5 HOH A 7 607 1 HOH HOH . I 5 HOH A 8 608 102 HOH HOH . I 5 HOH A 9 609 59 HOH HOH . I 5 HOH A 10 610 45 HOH HOH . I 5 HOH A 11 611 14 HOH HOH . I 5 HOH A 12 612 96 HOH HOH . I 5 HOH A 13 613 27 HOH HOH . I 5 HOH A 14 614 2 HOH HOH . I 5 HOH A 15 615 25 HOH HOH . I 5 HOH A 16 616 13 HOH HOH . I 5 HOH A 17 617 17 HOH HOH . I 5 HOH A 18 618 101 HOH HOH . I 5 HOH A 19 619 8 HOH HOH . I 5 HOH A 20 620 41 HOH HOH . I 5 HOH A 21 621 16 HOH HOH . I 5 HOH A 22 622 88 HOH HOH . I 5 HOH A 23 623 146 HOH HOH . I 5 HOH A 24 624 199 HOH HOH . I 5 HOH A 25 625 12 HOH HOH . I 5 HOH A 26 626 176 HOH HOH . I 5 HOH A 27 627 5 HOH HOH . I 5 HOH A 28 628 44 HOH HOH . I 5 HOH A 29 629 138 HOH HOH . I 5 HOH A 30 630 187 HOH HOH . I 5 HOH A 31 631 38 HOH HOH . I 5 HOH A 32 632 19 HOH HOH . I 5 HOH A 33 633 133 HOH HOH . I 5 HOH A 34 634 152 HOH HOH . I 5 HOH A 35 635 64 HOH HOH . I 5 HOH A 36 636 75 HOH HOH . I 5 HOH A 37 637 43 HOH HOH . I 5 HOH A 38 638 100 HOH HOH . I 5 HOH A 39 639 55 HOH HOH . I 5 HOH A 40 640 89 HOH HOH . I 5 HOH A 41 641 172 HOH HOH . I 5 HOH A 42 642 3 HOH HOH . I 5 HOH A 43 643 10 HOH HOH . I 5 HOH A 44 644 31 HOH HOH . I 5 HOH A 45 645 34 HOH HOH . I 5 HOH A 46 646 58 HOH HOH . I 5 HOH A 47 647 78 HOH HOH . I 5 HOH A 48 648 26 HOH HOH . I 5 HOH A 49 649 37 HOH HOH . I 5 HOH A 50 650 97 HOH HOH . I 5 HOH A 51 651 61 HOH HOH . I 5 HOH A 52 652 109 HOH HOH . I 5 HOH A 53 653 7 HOH HOH . I 5 HOH A 54 654 158 HOH HOH . I 5 HOH A 55 655 73 HOH HOH . I 5 HOH A 56 656 50 HOH HOH . I 5 HOH A 57 657 51 HOH HOH . I 5 HOH A 58 658 197 HOH HOH . I 5 HOH A 59 659 86 HOH HOH . I 5 HOH A 60 660 9 HOH HOH . I 5 HOH A 61 661 186 HOH HOH . I 5 HOH A 62 662 6 HOH HOH . I 5 HOH A 63 663 68 HOH HOH . I 5 HOH A 64 664 82 HOH HOH . I 5 HOH A 65 665 169 HOH HOH . I 5 HOH A 66 666 29 HOH HOH . I 5 HOH A 67 667 52 HOH HOH . I 5 HOH A 68 668 33 HOH HOH . I 5 HOH A 69 669 48 HOH HOH . I 5 HOH A 70 670 24 HOH HOH . I 5 HOH A 71 671 56 HOH HOH . I 5 HOH A 72 672 36 HOH HOH . I 5 HOH A 73 673 66 HOH HOH . I 5 HOH A 74 674 77 HOH HOH . I 5 HOH A 75 675 15 HOH HOH . I 5 HOH A 76 676 20 HOH HOH . I 5 HOH A 77 677 11 HOH HOH . I 5 HOH A 78 678 35 HOH HOH . I 5 HOH A 79 679 39 HOH HOH . I 5 HOH A 80 680 54 HOH HOH . I 5 HOH A 81 681 32 HOH HOH . I 5 HOH A 82 682 202 HOH HOH . I 5 HOH A 83 683 150 HOH HOH . I 5 HOH A 84 684 94 HOH HOH . I 5 HOH A 85 685 79 HOH HOH . I 5 HOH A 86 686 95 HOH HOH . I 5 HOH A 87 687 110 HOH HOH . I 5 HOH A 88 688 171 HOH HOH . I 5 HOH A 89 689 18 HOH HOH . I 5 HOH A 90 690 57 HOH HOH . I 5 HOH A 91 691 21 HOH HOH . I 5 HOH A 92 692 53 HOH HOH . I 5 HOH A 93 693 72 HOH HOH . I 5 HOH A 94 694 107 HOH HOH . I 5 HOH A 95 695 42 HOH HOH . I 5 HOH A 96 696 70 HOH HOH . I 5 HOH A 97 697 99 HOH HOH . I 5 HOH A 98 698 193 HOH HOH . I 5 HOH A 99 699 184 HOH HOH . I 5 HOH A 100 700 80 HOH HOH . I 5 HOH A 101 701 67 HOH HOH . I 5 HOH A 102 702 192 HOH HOH . I 5 HOH A 103 703 166 HOH HOH . I 5 HOH A 104 704 200 HOH HOH . I 5 HOH A 105 705 105 HOH HOH . I 5 HOH A 106 706 74 HOH HOH . I 5 HOH A 107 707 28 HOH HOH . I 5 HOH A 108 708 46 HOH HOH . I 5 HOH A 109 709 84 HOH HOH . I 5 HOH A 110 710 83 HOH HOH . I 5 HOH A 111 711 49 HOH HOH . I 5 HOH A 112 712 30 HOH HOH . I 5 HOH A 113 713 191 HOH HOH . I 5 HOH A 114 714 98 HOH HOH . I 5 HOH A 115 715 23 HOH HOH . I 5 HOH A 116 716 137 HOH HOH . I 5 HOH A 117 717 87 HOH HOH . I 5 HOH A 118 718 167 HOH HOH . I 5 HOH A 119 719 71 HOH HOH . I 5 HOH A 120 720 190 HOH HOH . I 5 HOH A 121 721 63 HOH HOH . I 5 HOH A 122 722 201 HOH HOH . I 5 HOH A 123 723 62 HOH HOH . I 5 HOH A 124 724 22 HOH HOH . I 5 HOH A 125 725 47 HOH HOH . I 5 HOH A 126 726 124 HOH HOH . I 5 HOH A 127 727 159 HOH HOH . I 5 HOH A 128 728 143 HOH HOH . I 5 HOH A 129 729 162 HOH HOH . I 5 HOH A 130 730 147 HOH HOH . I 5 HOH A 131 731 161 HOH HOH . I 5 HOH A 132 732 136 HOH HOH . I 5 HOH A 133 733 153 HOH HOH . I 5 HOH A 134 734 4 HOH HOH . I 5 HOH A 135 735 114 HOH HOH . I 5 HOH A 136 736 129 HOH HOH . I 5 HOH A 137 737 116 HOH HOH . I 5 HOH A 138 738 157 HOH HOH . I 5 HOH A 139 739 65 HOH HOH . I 5 HOH A 140 740 154 HOH HOH . I 5 HOH A 141 741 142 HOH HOH . I 5 HOH A 142 742 185 HOH HOH . I 5 HOH A 143 743 156 HOH HOH . I 5 HOH A 144 744 183 HOH HOH . I 5 HOH A 145 745 118 HOH HOH . I 5 HOH A 146 746 148 HOH HOH . I 5 HOH A 147 747 160 HOH HOH . I 5 HOH A 148 748 40 HOH HOH . I 5 HOH A 149 749 76 HOH HOH . I 5 HOH A 150 750 164 HOH HOH . I 5 HOH A 151 751 113 HOH HOH . I 5 HOH A 152 752 181 HOH HOH . I 5 HOH A 153 753 115 HOH HOH . I 5 HOH A 154 754 125 HOH HOH . I 5 HOH A 155 755 119 HOH HOH . I 5 HOH A 156 756 189 HOH HOH . I 5 HOH A 157 757 85 HOH HOH . I 5 HOH A 158 758 122 HOH HOH . I 5 HOH A 159 759 121 HOH HOH . I 5 HOH A 160 760 139 HOH HOH . I 5 HOH A 161 761 198 HOH HOH . I 5 HOH A 162 762 69 HOH HOH . I 5 HOH A 163 763 144 HOH HOH . I 5 HOH A 164 764 151 HOH HOH . I 5 HOH A 165 765 93 HOH HOH . I 5 HOH A 166 766 130 HOH HOH . I 5 HOH A 167 767 126 HOH HOH . I 5 HOH A 168 768 106 HOH HOH . I 5 HOH A 169 769 60 HOH HOH . I 5 HOH A 170 770 182 HOH HOH . I 5 HOH A 171 771 132 HOH HOH . I 5 HOH A 172 772 145 HOH HOH . I 5 HOH A 173 773 111 HOH HOH . I 5 HOH A 174 774 188 HOH HOH . I 5 HOH A 175 775 128 HOH HOH . I 5 HOH A 176 776 112 HOH HOH . I 5 HOH A 177 777 92 HOH HOH . I 5 HOH A 178 778 180 HOH HOH . I 5 HOH A 179 779 174 HOH HOH . I 5 HOH A 180 780 127 HOH HOH . I 5 HOH A 181 781 104 HOH HOH . I 5 HOH A 182 782 81 HOH HOH . I 5 HOH A 183 783 134 HOH HOH . I 5 HOH A 184 784 149 HOH HOH . I 5 HOH A 185 785 203 HOH HOH . I 5 HOH A 186 786 91 HOH HOH . I 5 HOH A 187 787 131 HOH HOH . I 5 HOH A 188 788 177 HOH HOH . I 5 HOH A 189 789 173 HOH HOH . I 5 HOH A 190 790 90 HOH HOH . I 5 HOH A 191 791 195 HOH HOH . I 5 HOH A 192 792 120 HOH HOH . I 5 HOH A 193 793 135 HOH HOH . I 5 HOH A 194 794 108 HOH HOH . I 5 HOH A 195 795 103 HOH HOH . I 5 HOH A 196 796 175 HOH HOH . I 5 HOH A 197 797 179 HOH HOH . I 5 HOH A 198 798 117 HOH HOH . I 5 HOH A 199 799 155 HOH HOH . I 5 HOH A 200 800 178 HOH HOH . I 5 HOH A 201 801 170 HOH HOH . I 5 HOH A 202 802 165 HOH HOH . I 5 HOH A 203 803 141 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 17.498 _atom_site.Cartn_y 6.378 _atom_site.Cartn_z 19.533 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 43.61 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 505 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #