data_5IYU
#
_model_server_result.job_id            V5uKqw8w02TW7eSEXzqI6Q 
_model_server_result.datetime_utc      '2024-11-14 04:28:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5iyu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    5IYU 
#
_exptl.entry_id    5IYU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              229.402 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'LAURYL DIMETHYLAMINE-N-OXIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.93 
_cell.angle_gamma         90 
_cell.entry_id            5IYU 
_cell.length_a            56.83 
_cell.length_b            73.39 
_cell.length_c            114.53 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5IYU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ALA 136 A ALA 136 1_555 G NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? 
metalc ? metalc2 A O THR 139 A THR 139 1_555 G NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? 
metalc ? metalc3 A O TYR 141 A TYR 141 1_555 G NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? 
#
_chem_comp.formula           'C14 H31 N O' 
_chem_comp.formula_weight    229.402 
_chem_comp.id                LDA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'LAURYL DIMETHYLAMINE-N-OXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 O1 LDA sing 160 n n 
N1 CM1 LDA sing 161 n n 
N1 CM2 LDA sing 162 n n 
N1 C1 LDA sing 163 n n 
CM1 HM11 LDA sing 164 n n 
CM1 HM12 LDA sing 165 n n 
CM1 HM13 LDA sing 166 n n 
CM2 HM21 LDA sing 167 n n 
CM2 HM22 LDA sing 168 n n 
CM2 HM23 LDA sing 169 n n 
C1 C2 LDA sing 170 n n 
C1 H11 LDA sing 171 n n 
C1 H12 LDA sing 172 n n 
C2 C3 LDA sing 173 n n 
C2 H21 LDA sing 174 n n 
C2 H22 LDA sing 175 n n 
C3 C4 LDA sing 176 n n 
C3 H31 LDA sing 177 n n 
C3 H32 LDA sing 178 n n 
C4 C5 LDA sing 179 n n 
C4 H41 LDA sing 180 n n 
C4 H42 LDA sing 181 n n 
C5 C6 LDA sing 182 n n 
C5 H51 LDA sing 183 n n 
C5 H52 LDA sing 184 n n 
C6 C7 LDA sing 185 n n 
C6 H61 LDA sing 186 n n 
C6 H62 LDA sing 187 n n 
C7 C8 LDA sing 188 n n 
C7 H71 LDA sing 189 n n 
C7 H72 LDA sing 190 n n 
C8 C9 LDA sing 191 n n 
C8 H81 LDA sing 192 n n 
C8 H82 LDA sing 193 n n 
C9 C10 LDA sing 194 n n 
C9 H91 LDA sing 195 n n 
C9 H92 LDA sing 196 n n 
C10 C11 LDA sing 197 n n 
C10 H101 LDA sing 198 n n 
C10 H102 LDA sing 199 n n 
C11 C12 LDA sing 200 n n 
C11 H111 LDA sing 201 n n 
C11 H112 LDA sing 202 n n 
C12 H121 LDA sing 203 n n 
C12 H122 LDA sing 204 n n 
C12 H123 LDA sing 205 n n 
#
_atom_sites.entry_id                     5IYU 
_atom_sites.fract_transf_matrix[1][1]    0.017596 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003718 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013626 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008924 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 LDA A 1 501 1496 LDA LDA . 
C 2 LDA A 1 502 1498 LDA LDA . 
D 3 OLC A 1 503 604 OLC OLC . 
E 4 PE5 A 1 504 1516 PE5 PE5 . 
F 4 PE5 A 1 505 1517 PE5 PE5 . 
G 5 NA A 1 506 601 NA NA . 
H 6 HOH A 1 601 532 HOH HOH . 
H 6 HOH A 2 602 547 HOH HOH . 
H 6 HOH A 3 603 512 HOH HOH . 
H 6 HOH A 4 604 546 HOH HOH . 
H 6 HOH A 5 605 513 HOH HOH . 
H 6 HOH A 6 606 504 HOH HOH . 
H 6 HOH A 7 607 518 HOH HOH . 
H 6 HOH A 8 608 503 HOH HOH . 
H 6 HOH A 9 609 511 HOH HOH . 
H 6 HOH A 10 610 548 HOH HOH . 
H 6 HOH A 11 611 514 HOH HOH . 
H 6 HOH A 12 612 543 HOH HOH . 
H 6 HOH A 13 613 538 HOH HOH . 
H 6 HOH A 14 614 539 HOH HOH . 
H 6 HOH A 15 615 529 HOH HOH . 
H 6 HOH A 16 616 521 HOH HOH . 
H 6 HOH A 17 617 522 HOH HOH . 
H 6 HOH A 18 618 544 HOH HOH . 
H 6 HOH A 19 619 545 HOH HOH . 
H 6 HOH A 20 620 531 HOH HOH . 
H 6 HOH A 21 621 505 HOH HOH . 
H 6 HOH A 22 622 537 HOH HOH . 
H 6 HOH A 23 623 519 HOH HOH . 
H 6 HOH A 24 624 517 HOH HOH . 
H 6 HOH A 25 625 535 HOH HOH . 
H 6 HOH A 26 626 534 HOH HOH . 
H 6 HOH A 27 627 516 HOH HOH . 
H 6 HOH A 28 628 526 HOH HOH . 
H 6 HOH A 29 629 520 HOH HOH . 
H 6 HOH A 30 630 525 HOH HOH . 
H 6 HOH A 31 631 527 HOH HOH . 
H 6 HOH A 32 632 528 HOH HOH . 
H 6 HOH A 33 633 536 HOH HOH . 
H 6 HOH A 34 634 524 HOH HOH . 
H 6 HOH A 35 635 533 HOH HOH . 
H 6 HOH A 36 636 541 HOH HOH . 
H 6 HOH A 37 637 530 HOH HOH . 
H 6 HOH A 38 638 542 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 LDA . . . B 2 53.695 -29.829 120.406 1 75.36 ? N1 LDA 501 A 1 
HETATM 2 O O1 LDA . . . B 2 53.914 -31.246 120.175 1 64.18 ? O1 LDA 501 A 1 
HETATM 3 C CM1 LDA . . . B 2 52.71 -29.325 119.44 1 59.32 ? CM1 LDA 501 A 1 
HETATM 4 C CM2 LDA . . . B 2 54.963 -29.103 120.242 1 76.66 ? CM2 LDA 501 A 1 
HETATM 5 C C1 LDA . . . B 2 53.184 -29.619 121.767 1 59.87 ? C1 LDA 501 A 1 
HETATM 6 C C2 LDA . . . B 2 53.99 -30.451 122.761 1 54.77 ? C2 LDA 501 A 1 
HETATM 7 C C3 LDA . . . B 2 53.105 -31.595 123.245 1 50.57 ? C3 LDA 501 A 1 
HETATM 8 C C4 LDA . . . B 2 53.778 -32.322 124.401 1 46.58 ? C4 LDA 501 A 1 
HETATM 9 C C5 LDA . . . B 2 52.85 -32.27 125.61 1 35.55 ? C5 LDA 501 A 1 
HETATM 10 C C6 LDA . . . B 2 53.701 -32.321 126.873 1 41.53 ? C6 LDA 501 A 1 
HETATM 11 C C7 LDA . . . B 2 54.305 -33.716 126.999 1 41.44 ? C7 LDA 501 A 1 
HETATM 12 C C8 LDA . . . B 2 53.944 -34.293 128.366 1 44.27 ? C8 LDA 501 A 1 
HETATM 13 C C9 LDA . . . B 2 54.629 -33.477 129.46 1 36.18 ? C9 LDA 501 A 1 
HETATM 14 C C10 LDA . . . B 2 54.255 -34.053 130.826 1 37.59 ? C10 LDA 501 A 1 
HETATM 15 C C11 LDA . . . B 2 55.477 -34.739 131.438 1 34.25 ? C11 LDA 501 A 1 
HETATM 16 C C12 LDA . . . B 2 56.595 -33.715 131.639 1 33.95 ? C12 LDA 501 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           16 
#