data_5IYU
#
_model_server_result.job_id            sg6E3BhwB6vmqTamA3royA 
_model_server_result.datetime_utc      '2024-11-14 04:27:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5iyu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    5IYU 
#
_exptl.entry_id    5IYU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.93 
_cell.angle_gamma         90 
_cell.entry_id            5IYU 
_cell.length_a            56.83 
_cell.length_b            73.39 
_cell.length_c            114.53 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5IYU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ALA 136 A ALA 136 1_555 G NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? 
metalc ? metalc2 A O THR 139 A THR 139 1_555 G NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? 
metalc ? metalc3 A O TYR 141 A TYR 141 1_555 G NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 270 n n 
C10 C9 OLC doub 271 n n 
C10 C11 OLC sing 272 n n 
C9 C8 OLC sing 273 n n 
C17 C16 OLC sing 274 z n 
C11 C12 OLC sing 275 n n 
C8 C7 OLC sing 276 n n 
C24 C22 OLC sing 277 n n 
C24 O25 OLC sing 278 n n 
C16 C15 OLC sing 279 n n 
C12 C13 OLC sing 280 n n 
C7 C6 OLC sing 281 n n 
C15 C14 OLC sing 282 n n 
C13 C14 OLC sing 283 n n 
C6 C5 OLC sing 284 n n 
C5 C4 OLC sing 285 n n 
C4 C3 OLC sing 286 n n 
C3 C2 OLC sing 287 n n 
C2 C1 OLC sing 288 n n 
C21 C22 OLC sing 289 n n 
C21 O20 OLC sing 290 n n 
C1 O19 OLC doub 291 n n 
C1 O20 OLC sing 292 n n 
C22 O23 OLC sing 293 n n 
C18 H18 OLC sing 294 n n 
C18 H18A OLC sing 295 n n 
C18 H18B OLC sing 296 n n 
C10 H10 OLC sing 297 n n 
C9 H9 OLC sing 298 n n 
C17 H17 OLC sing 299 n n 
C17 H17A OLC sing 300 n n 
C11 H11 OLC sing 301 n n 
C11 H11A OLC sing 302 n n 
C8 H8 OLC sing 303 n n 
C8 H8A OLC sing 304 n n 
C24 H24 OLC sing 305 n n 
C24 H24A OLC sing 306 n n 
C16 H16 OLC sing 307 n n 
C16 H16A OLC sing 308 n n 
C12 H12 OLC sing 309 n n 
C12 H12A OLC sing 310 n n 
C7 H7 OLC sing 311 n n 
C7 H7A OLC sing 312 n n 
C15 H15 OLC sing 313 n n 
C15 H15A OLC sing 314 n n 
C13 H13 OLC sing 315 n n 
C13 H13A OLC sing 316 n n 
C6 H6 OLC sing 317 n n 
C6 H6A OLC sing 318 n n 
C14 H14 OLC sing 319 n n 
C14 H14A OLC sing 320 n n 
C5 H5 OLC sing 321 n n 
C5 H5A OLC sing 322 n n 
C4 H4 OLC sing 323 n n 
C4 H4A OLC sing 324 n n 
C3 H3 OLC sing 325 n n 
C3 H3A OLC sing 326 n n 
C2 H2 OLC sing 327 n n 
C2 H2A OLC sing 328 n n 
C21 H21 OLC sing 329 n n 
C21 H21A OLC sing 330 n n 
C22 H22 OLC sing 331 n n 
O25 HO25 OLC sing 332 n n 
O23 HO23 OLC sing 333 n n 
#
_atom_sites.entry_id                     5IYU 
_atom_sites.fract_transf_matrix[1][1]    0.017596 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003718 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013626 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008924 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 LDA A 1 501 1496 LDA LDA . 
C 2 LDA A 1 502 1498 LDA LDA . 
D 3 OLC A 1 503 604 OLC OLC . 
E 4 PE5 A 1 504 1516 PE5 PE5 . 
F 4 PE5 A 1 505 1517 PE5 PE5 . 
G 5 NA A 1 506 601 NA NA . 
H 6 HOH A 1 601 532 HOH HOH . 
H 6 HOH A 2 602 547 HOH HOH . 
H 6 HOH A 3 603 512 HOH HOH . 
H 6 HOH A 4 604 546 HOH HOH . 
H 6 HOH A 5 605 513 HOH HOH . 
H 6 HOH A 6 606 504 HOH HOH . 
H 6 HOH A 7 607 518 HOH HOH . 
H 6 HOH A 8 608 503 HOH HOH . 
H 6 HOH A 9 609 511 HOH HOH . 
H 6 HOH A 10 610 548 HOH HOH . 
H 6 HOH A 11 611 514 HOH HOH . 
H 6 HOH A 12 612 543 HOH HOH . 
H 6 HOH A 13 613 538 HOH HOH . 
H 6 HOH A 14 614 539 HOH HOH . 
H 6 HOH A 15 615 529 HOH HOH . 
H 6 HOH A 16 616 521 HOH HOH . 
H 6 HOH A 17 617 522 HOH HOH . 
H 6 HOH A 18 618 544 HOH HOH . 
H 6 HOH A 19 619 545 HOH HOH . 
H 6 HOH A 20 620 531 HOH HOH . 
H 6 HOH A 21 621 505 HOH HOH . 
H 6 HOH A 22 622 537 HOH HOH . 
H 6 HOH A 23 623 519 HOH HOH . 
H 6 HOH A 24 624 517 HOH HOH . 
H 6 HOH A 25 625 535 HOH HOH . 
H 6 HOH A 26 626 534 HOH HOH . 
H 6 HOH A 27 627 516 HOH HOH . 
H 6 HOH A 28 628 526 HOH HOH . 
H 6 HOH A 29 629 520 HOH HOH . 
H 6 HOH A 30 630 525 HOH HOH . 
H 6 HOH A 31 631 527 HOH HOH . 
H 6 HOH A 32 632 528 HOH HOH . 
H 6 HOH A 33 633 536 HOH HOH . 
H 6 HOH A 34 634 524 HOH HOH . 
H 6 HOH A 35 635 533 HOH HOH . 
H 6 HOH A 36 636 541 HOH HOH . 
H 6 HOH A 37 637 530 HOH HOH . 
H 6 HOH A 38 638 542 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 OLC . . . D 3 14.277 -8.682 128.291 1 44.97 ? C18 OLC 503 A 1 
HETATM 2 C C10 OLC . . . D 3 13.022 -6.31 133.857 1 60.15 ? C10 OLC 503 A 1 
HETATM 3 C C9 OLC . . . D 3 13.558 -5.142 134.251 1 59.75 ? C9 OLC 503 A 1 
HETATM 4 C C17 OLC . . . D 3 14.192 -8.855 129.806 1 66.44 ? C17 OLC 503 A 1 
HETATM 5 C C11 OLC . . . D 3 13.065 -7.451 134.875 1 40.09 ? C11 OLC 503 A 1 
HETATM 6 C C8 OLC . . . D 3 14.134 -5.107 135.667 1 51.93 ? C8 OLC 503 A 1 
HETATM 7 C C24 OLC . . . D 3 16.292 -2.634 146.863 1 54.71 ? C24 OLC 503 A 1 
HETATM 8 C C16 OLC . . . D 3 13.675 -10.255 130.131 1 54.81 ? C16 OLC 503 A 1 
HETATM 9 C C12 OLC . . . D 3 12.035 -8.521 134.51 1 50.96 ? C12 OLC 503 A 1 
HETATM 10 C C7 OLC . . . D 3 15.048 -3.89 135.801 1 59.95 ? C7 OLC 503 A 1 
HETATM 11 C C15 OLC . . . D 3 12.514 -10.153 131.117 1 59.42 ? C15 OLC 503 A 1 
HETATM 12 C C13 OLC . . . D 3 11.89 -8.637 132.993 1 32.4 ? C13 OLC 503 A 1 
HETATM 13 C C6 OLC . . . D 3 15.34 -3.601 137.272 1 69.46 ? C6 OLC 503 A 1 
HETATM 14 C C14 OLC . . . D 3 12.995 -9.526 132.425 1 45.32 ? C14 OLC 503 A 1 
HETATM 15 C C5 OLC . . . D 3 16.301 -2.417 137.362 1 53.32 ? C5 OLC 503 A 1 
HETATM 16 C C4 OLC . . . D 3 17.285 -2.622 138.513 1 60.87 ? C4 OLC 503 A 1 
HETATM 17 C C3 OLC . . . D 3 16.518 -2.767 139.824 1 46.62 ? C3 OLC 503 A 1 
HETATM 18 C C2 OLC . . . D 3 17.245 -2.016 140.938 1 46.56 ? C2 OLC 503 A 1 
HETATM 19 C C21 OLC . . . D 3 16.516 -1.773 144.511 1 45.51 ? C21 OLC 503 A 1 
HETATM 20 C C1 OLC . . . D 3 16.626 -2.421 142.273 1 54.58 ? C1 OLC 503 A 1 
HETATM 21 C C22 OLC . . . D 3 16.404 -3.02 145.388 1 53.47 ? C22 OLC 503 A 1 
HETATM 22 O O19 OLC . . . D 3 15.595 -3.002 142.333 1 48.56 ? O19 OLC 503 A 1 
HETATM 23 O O25 OLC . . . D 3 15.772 -1.339 146.982 1 52.46 ? O25 OLC 503 A 1 
HETATM 24 O O23 OLC . . . D 3 15.272 -3.751 145.004 1 58.46 ? O23 OLC 503 A 1 
HETATM 25 O O20 OLC . . . D 3 17.33 -2.076 143.361 1 53.3 ? O20 OLC 503 A 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           214 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           25 
#