data_5IYU
#
_model_server_result.job_id            ShRHIe_mpb4YXqI--LNNRw 
_model_server_result.datetime_utc      '2024-11-14 04:36:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5iyu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":505}' 
#
_entry.id    5IYU 
#
_exptl.entry_id    5IYU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.489 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.93 
_cell.angle_gamma         90 
_cell.entry_id            5IYU 
_cell.length_a            56.83 
_cell.length_b            73.39 
_cell.length_c            114.53 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5IYU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ALA 136 A ALA 136 1_555 G NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? 
metalc ? metalc2 A O THR 139 A THR 139 1_555 G NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? 
metalc ? metalc3 A O TYR 141 A TYR 141 1_555 G NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? 
#
_chem_comp.formula           'C18 H38 O9' 
_chem_comp.formula_weight    398.489 
_chem_comp.id                PE5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL;POLYETHYLENE GLYCOL PEG400' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C48 C50 PE5 sing 334 n n 
C48 H481 PE5 sing 335 n n 
C48 H482 PE5 sing 336 n n 
C48 H483 PE5 sing 337 n n 
C50 O1 PE5 sing 338 n n 
C50 H501 PE5 sing 339 n n 
C50 H502 PE5 sing 340 n n 
O1 C1 PE5 sing 341 n n 
C1 C2 PE5 sing 342 n n 
C1 H11 PE5 sing 343 n n 
C1 H12 PE5 sing 344 n n 
C2 O2 PE5 sing 345 n n 
C2 H21 PE5 sing 346 n n 
C2 H22 PE5 sing 347 n n 
O2 C3 PE5 sing 348 n n 
C3 C4 PE5 sing 349 n n 
C3 H31 PE5 sing 350 n n 
C3 H32 PE5 sing 351 n n 
C4 O3 PE5 sing 352 n n 
C4 H41 PE5 sing 353 n n 
C4 H42 PE5 sing 354 n n 
O3 C5 PE5 sing 355 n n 
C5 C6 PE5 sing 356 n n 
C5 H51 PE5 sing 357 n n 
C5 H52A PE5 sing 358 n n 
C6 O4 PE5 sing 359 n n 
C6 H61 PE5 sing 360 n n 
C6 H62 PE5 sing 361 n n 
O4 C7 PE5 sing 362 n n 
C7 C8 PE5 sing 363 n n 
C7 H71 PE5 sing 364 n n 
C7 H72 PE5 sing 365 n n 
C8 O5 PE5 sing 366 n n 
C8 H81 PE5 sing 367 n n 
C8 H82 PE5 sing 368 n n 
O5 C9 PE5 sing 369 n n 
C9 C10 PE5 sing 370 n n 
C9 H91 PE5 sing 371 n n 
C9 H92 PE5 sing 372 n n 
C10 O6 PE5 sing 373 n n 
C10 H101 PE5 sing 374 n n 
C10 H102 PE5 sing 375 n n 
O6 C11 PE5 sing 376 n n 
C11 C12 PE5 sing 377 n n 
C11 H111 PE5 sing 378 n n 
C11 H112 PE5 sing 379 n n 
C12 O7 PE5 sing 380 n n 
C12 H121 PE5 sing 381 n n 
C12 H122 PE5 sing 382 n n 
O7 C13 PE5 sing 383 n n 
C13 C14 PE5 sing 384 n n 
C13 H131 PE5 sing 385 n n 
C13 H132 PE5 sing 386 n n 
C14 O8 PE5 sing 387 n n 
C14 H141 PE5 sing 388 n n 
C14 H142 PE5 sing 389 n n 
O8 C15 PE5 sing 390 n n 
C15 C16 PE5 sing 391 n n 
C15 H151 PE5 sing 392 n n 
C15 H152 PE5 sing 393 n n 
C16 O52 PE5 sing 394 n n 
C16 H161 PE5 sing 395 n n 
C16 H162 PE5 sing 396 n n 
O52 H52 PE5 sing 397 n n 
#
_atom_sites.entry_id                     5IYU 
_atom_sites.fract_transf_matrix[1][1]    0.017596 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003718 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013626 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008924 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 LDA A 1 501 1496 LDA LDA . 
C 2 LDA A 1 502 1498 LDA LDA . 
D 3 OLC A 1 503 604 OLC OLC . 
E 4 PE5 A 1 504 1516 PE5 PE5 . 
F 4 PE5 A 1 505 1517 PE5 PE5 . 
G 5 NA A 1 506 601 NA NA . 
H 6 HOH A 1 601 532 HOH HOH . 
H 6 HOH A 2 602 547 HOH HOH . 
H 6 HOH A 3 603 512 HOH HOH . 
H 6 HOH A 4 604 546 HOH HOH . 
H 6 HOH A 5 605 513 HOH HOH . 
H 6 HOH A 6 606 504 HOH HOH . 
H 6 HOH A 7 607 518 HOH HOH . 
H 6 HOH A 8 608 503 HOH HOH . 
H 6 HOH A 9 609 511 HOH HOH . 
H 6 HOH A 10 610 548 HOH HOH . 
H 6 HOH A 11 611 514 HOH HOH . 
H 6 HOH A 12 612 543 HOH HOH . 
H 6 HOH A 13 613 538 HOH HOH . 
H 6 HOH A 14 614 539 HOH HOH . 
H 6 HOH A 15 615 529 HOH HOH . 
H 6 HOH A 16 616 521 HOH HOH . 
H 6 HOH A 17 617 522 HOH HOH . 
H 6 HOH A 18 618 544 HOH HOH . 
H 6 HOH A 19 619 545 HOH HOH . 
H 6 HOH A 20 620 531 HOH HOH . 
H 6 HOH A 21 621 505 HOH HOH . 
H 6 HOH A 22 622 537 HOH HOH . 
H 6 HOH A 23 623 519 HOH HOH . 
H 6 HOH A 24 624 517 HOH HOH . 
H 6 HOH A 25 625 535 HOH HOH . 
H 6 HOH A 26 626 534 HOH HOH . 
H 6 HOH A 27 627 516 HOH HOH . 
H 6 HOH A 28 628 526 HOH HOH . 
H 6 HOH A 29 629 520 HOH HOH . 
H 6 HOH A 30 630 525 HOH HOH . 
H 6 HOH A 31 631 527 HOH HOH . 
H 6 HOH A 32 632 528 HOH HOH . 
H 6 HOH A 33 633 536 HOH HOH . 
H 6 HOH A 34 634 524 HOH HOH . 
H 6 HOH A 35 635 533 HOH HOH . 
H 6 HOH A 36 636 541 HOH HOH . 
H 6 HOH A 37 637 530 HOH HOH . 
H 6 HOH A 38 638 542 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 PE5 . . . F 4 24.239 -20.886 141.934 1 39.28 ? O1 PE5 505 A 1 
HETATM 2 C C1 PE5 . . . F 4 22.886 -20.752 141.971 1 41.84 ? C1 PE5 505 A 1 
HETATM 3 C C2 PE5 . . . F 4 22.438 -19.781 140.878 1 46.02 ? C2 PE5 505 A 1 
HETATM 4 O O2 PE5 . . . F 4 23.017 -18.568 141.084 1 55.56 ? O2 PE5 505 A 1 
HETATM 5 C C3 PE5 . . . F 4 22.559 -17.684 140.158 1 50.33 ? C3 PE5 505 A 1 
HETATM 6 C C4 PE5 . . . F 4 21.583 -16.711 140.822 1 52.77 ? C4 PE5 505 A 1 
HETATM 7 O O3 PE5 . . . F 4 21.348 -15.664 139.987 1 48.75 ? O3 PE5 505 A 1 
HETATM 8 C C5 PE5 . . . F 4 20.021 -15.764 139.463 1 38.36 ? C5 PE5 505 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           215 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#