data_5IZN # _model_server_result.job_id wQkPaEvuHukaHgUUik1ogw _model_server_result.datetime_utc '2025-10-01 13:21:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5izn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":101}' # _entry.id 5IZN # _exptl.entry_id 5IZN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.51 _cell.angle_gamma 90 _cell.entry_id 5IZN _cell.length_a 128.451 _cell.length_b 58.797 _cell.length_c 122.004 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IZN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,Q,R,S,T 1 1 E,F,G,H,N,O,P,U 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 3 A ALA 0 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 4 A MSE 1 1_555 A N LYS 5 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C GLN 52 A GLN 49 1_555 A N MSE 53 A MSE 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 53 A MSE 50 1_555 A N ASP 54 A ASP 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C HIS 89 A HIS 86 1_555 A N MSE 90 A MSE 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C MSE 90 A MSE 87 1_555 A N ASP 91 A ASP 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 B C ALA 3 B ALA 0 1_555 B N MSE 4 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 B C MSE 4 B MSE 1 1_555 B N LYS 5 B LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale9 B C GLN 52 B GLN 49 1_555 B N MSE 53 B MSE 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 B C MSE 53 B MSE 50 1_555 B N ASP 54 B ASP 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 B C HIS 89 B HIS 86 1_555 B N MSE 90 B MSE 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 B C MSE 90 B MSE 87 1_555 B N ASP 91 B ASP 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 C C ALA 3 C ALA 0 1_555 C N MSE 4 C MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 C C MSE 4 C MSE 1 1_555 C N LYS 5 C LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 C C GLN 52 C GLN 49 1_555 C N MSE 53 C MSE 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale16 C C MSE 53 C MSE 50 1_555 C N ASP 54 C ASP 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale17 C C HIS 89 C HIS 86 1_555 C N MSE 90 C MSE 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale18 C C MSE 90 C MSE 87 1_555 C N ASP 91 C ASP 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale19 D C MSE 4 D MSE 1 1_555 D N LYS 5 D LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale20 D C GLN 52 D GLN 49 1_555 D N MSE 53 D MSE 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale21 D C MSE 53 D MSE 50 1_555 D N ASP 54 D ASP 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale22 D C HIS 89 D HIS 86 1_555 D N MSE 90 D MSE 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale23 D C MSE 90 D MSE 87 1_555 D N ASP 91 D ASP 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale24 E C ALA 3 E ALA 0 1_555 E N MSE 4 E MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale25 E C MSE 4 E MSE 1 1_555 E N LYS 5 E LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale26 E C GLN 52 E GLN 49 1_555 E N MSE 53 E MSE 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale27 E C MSE 53 E MSE 50 1_555 E N ASP 54 E ASP 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale28 E C HIS 89 E HIS 86 1_555 E N MSE 90 E MSE 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale29 E C MSE 90 E MSE 87 1_555 E N ASP 91 E ASP 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale30 F C MSE 4 F MSE 1 1_555 F N LYS 5 F LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale31 F C GLN 52 F GLN 49 1_555 F N MSE 53 F MSE 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale32 F C MSE 53 F MSE 50 1_555 F N ASP 54 F ASP 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale33 F C HIS 89 F HIS 86 1_555 F N MSE 90 F MSE 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale34 F C MSE 90 F MSE 87 1_555 F N ASP 91 F ASP 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale35 G C ALA 3 G ALA 0 1_555 G N MSE 4 G MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale36 G C MSE 4 G MSE 1 1_555 G N LYS 5 G LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale37 G C GLN 52 G GLN 49 1_555 G N MSE 53 G MSE 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale38 G C MSE 53 G MSE 50 1_555 G N ASP 54 G ASP 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale39 G C HIS 89 G HIS 86 1_555 G N MSE 90 G MSE 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale40 G C MSE 90 G MSE 87 1_555 G N ASP 91 G ASP 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale41 H C MSE 4 H MSE 1 1_555 H N LYS 5 H LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale42 H C GLN 52 H GLN 49 1_555 H N MSE 53 H MSE 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale43 H C MSE 53 H MSE 50 1_555 H N ASP 54 H ASP 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale44 H C HIS 89 H HIS 86 1_555 H N MSE 90 H MSE 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale45 H C MSE 90 H MSE 87 1_555 H N ASP 91 H ASP 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag ? _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 247 n n P O2 PO4 sing 248 n n P O3 PO4 sing 249 n n P O4 PO4 sing 250 n n # _atom_sites.entry_id 5IZN _atom_sites.fract_transf_matrix[1][1] 0.007785 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000069 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017008 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008197 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 PO4 A 1 101 1 PO4 PO4 ? J 2 PO4 B 1 101 2 PO4 PO4 ? K 2 PO4 B 1 102 6 PO4 PO4 ? L 2 PO4 C 1 101 3 PO4 PO4 ? M 2 PO4 D 1 101 8 PO4 PO4 ? N 2 PO4 E 1 101 4 PO4 PO4 ? O 2 PO4 F 1 101 5 PO4 PO4 ? P 2 PO4 H 1 101 7 PO4 PO4 ? Q 3 HOH A 1 201 8 HOH HOH ? Q 3 HOH A 2 202 36 HOH HOH ? Q 3 HOH A 3 203 34 HOH HOH ? Q 3 HOH A 4 204 21 HOH HOH ? Q 3 HOH A 5 205 25 HOH HOH ? Q 3 HOH A 6 206 58 HOH HOH ? Q 3 HOH A 7 207 75 HOH HOH ? Q 3 HOH A 8 208 78 HOH HOH ? Q 3 HOH A 9 209 14 HOH HOH ? Q 3 HOH A 10 210 57 HOH HOH ? Q 3 HOH A 11 211 50 HOH HOH ? Q 3 HOH A 12 212 77 HOH HOH ? Q 3 HOH A 13 213 56 HOH HOH ? Q 3 HOH A 14 214 37 HOH HOH ? Q 3 HOH A 15 215 3 HOH HOH ? Q 3 HOH A 16 216 72 HOH HOH ? Q 3 HOH A 17 217 87 HOH HOH ? Q 3 HOH A 18 218 47 HOH HOH ? Q 3 HOH A 19 219 62 HOH HOH ? R 3 HOH B 1 201 69 HOH HOH ? R 3 HOH B 2 202 12 HOH HOH ? R 3 HOH B 3 203 35 HOH HOH ? R 3 HOH B 4 204 27 HOH HOH ? R 3 HOH B 5 205 22 HOH HOH ? R 3 HOH B 6 206 44 HOH HOH ? R 3 HOH B 7 207 10 HOH HOH ? R 3 HOH B 8 208 74 HOH HOH ? R 3 HOH B 9 209 86 HOH HOH ? R 3 HOH B 10 210 51 HOH HOH ? R 3 HOH B 11 211 41 HOH HOH ? R 3 HOH B 12 212 28 HOH HOH ? R 3 HOH B 13 213 43 HOH HOH ? R 3 HOH B 14 214 13 HOH HOH ? R 3 HOH B 15 215 31 HOH HOH ? R 3 HOH B 16 216 73 HOH HOH ? R 3 HOH B 17 217 71 HOH HOH ? R 3 HOH B 18 218 30 HOH HOH ? R 3 HOH B 19 219 59 HOH HOH ? R 3 HOH B 20 220 17 HOH HOH ? S 3 HOH C 1 201 88 HOH HOH ? S 3 HOH C 2 202 61 HOH HOH ? S 3 HOH C 3 203 45 HOH HOH ? S 3 HOH C 4 204 54 HOH HOH ? S 3 HOH C 5 205 24 HOH HOH ? S 3 HOH C 6 206 60 HOH HOH ? S 3 HOH C 7 207 39 HOH HOH ? S 3 HOH C 8 208 66 HOH HOH ? S 3 HOH C 9 209 6 HOH HOH ? S 3 HOH C 10 210 68 HOH HOH ? S 3 HOH C 11 211 11 HOH HOH ? S 3 HOH C 12 212 5 HOH HOH ? S 3 HOH C 13 213 33 HOH HOH ? S 3 HOH C 14 214 1 HOH HOH ? S 3 HOH C 15 215 70 HOH HOH ? S 3 HOH C 16 216 15 HOH HOH ? S 3 HOH C 17 217 65 HOH HOH ? S 3 HOH C 18 218 16 HOH HOH ? S 3 HOH C 19 219 7 HOH HOH ? S 3 HOH C 20 220 38 HOH HOH ? S 3 HOH C 21 221 83 HOH HOH ? S 3 HOH C 22 222 23 HOH HOH ? S 3 HOH C 23 223 63 HOH HOH ? S 3 HOH C 24 224 53 HOH HOH ? S 3 HOH C 25 225 64 HOH HOH ? T 3 HOH D 1 201 46 HOH HOH ? T 3 HOH D 2 202 29 HOH HOH ? T 3 HOH D 3 203 67 HOH HOH ? T 3 HOH D 4 204 18 HOH HOH ? T 3 HOH D 5 205 19 HOH HOH ? T 3 HOH D 6 206 40 HOH HOH ? T 3 HOH D 7 207 42 HOH HOH ? T 3 HOH D 8 208 20 HOH HOH ? T 3 HOH D 9 209 9 HOH HOH ? T 3 HOH D 10 210 48 HOH HOH ? T 3 HOH D 11 211 55 HOH HOH ? T 3 HOH D 12 212 32 HOH HOH ? T 3 HOH D 13 213 4 HOH HOH ? T 3 HOH D 14 214 85 HOH HOH ? T 3 HOH D 15 215 76 HOH HOH ? T 3 HOH D 16 216 79 HOH HOH ? T 3 HOH D 17 217 2 HOH HOH ? T 3 HOH D 18 218 82 HOH HOH ? U 3 HOH G 1 101 52 HOH HOH ? U 3 HOH G 2 102 84 HOH HOH ? U 3 HOH G 3 103 49 HOH HOH ? U 3 HOH G 4 104 26 HOH HOH ? U 3 HOH G 5 105 80 HOH HOH ? U 3 HOH G 6 106 81 HOH HOH ? # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . M 2 11.906 44.143 72.316 0.91 111.39 ? P PO4 101 D 1 HETATM 2 O O1 PO4 . . . M 2 12.331 44.362 70.884 0.91 107.42 ? O1 PO4 101 D 1 HETATM 3 O O2 PO4 . . . M 2 10.41 44.315 72.427 0.91 112.49 ? O2 PO4 101 D 1 HETATM 4 O O3 PO4 . . . M 2 12.287 42.747 72.748 0.91 112.51 ? O3 PO4 101 D 1 HETATM 5 O O4 PO4 . . . M 2 12.596 45.148 73.208 0.91 109.48 ? O4 PO4 101 D 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 197 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #