data_5J03 # _model_server_result.job_id mY9voFz9ANivvPqCPeS6EQ _model_server_result.datetime_utc '2024-11-04 22:25:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j03 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 5J03 # _exptl.entry_id 5J03 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5J03 _cell.length_a 47.665 _cell.length_b 47.665 _cell.length_c 182.216 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J03 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 21 B ASP 21 1_555 C CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc2 B OD1 ASP 23 B ASP 23 1_555 C CA CA . B CA 201 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc3 B OD1 ASP 25 B ASP 25 1_555 C CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc4 B O THR 27 B THR 27 1_555 C CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc5 B OE1 GLU 32 B GLU 32 1_555 C CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc6 B OE2 GLU 32 B GLU 32 1_555 C CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc7 B OD1 ASP 57 B ASP 57 1_555 D CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc8 B OD1 ASP 59 B ASP 59 1_555 D CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc9 B OD1 ASN 61 B ASN 61 1_555 D CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc10 B O THR 63 B THR 63 1_555 D CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc11 B OE1 GLU 68 B GLU 68 1_555 D CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc12 B OE2 GLU 68 B GLU 68 1_555 D CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc13 B OD1 ASP 94 B ASP 94 1_555 E CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc14 B OD1 ASP 96 B ASP 96 1_555 E CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc15 B OD2 ASP 96 B ASP 96 1_555 E CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc16 B OD1 ASN 98 B ASN 98 1_555 E CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc17 B O TYR 100 B TYR 100 1_555 E CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc18 B OD1 ASP 130 B ASP 130 1_555 F CA CA . B CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc19 B OD1 ASP 132 B ASP 132 1_555 F CA CA . B CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc20 B OD1 ASP 134 B ASP 134 1_555 F CA CA . B CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc21 B O GLN 136 B GLN 136 1_555 F CA CA . B CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc22 B OE1 GLU 141 B GLU 141 1_555 G CA CA . B CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc23 B OE2 GLU 141 B GLU 141 1_555 G CA CA . B CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc24 B OE1 GLN 144 B GLN 144 1_555 G CA CA . B CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc25 C CA CA . B CA 201 1_555 J O HOH . B HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc26 D CA CA . B CA 202 1_555 J O HOH . B HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc27 D CA CA . B CA 202 1_555 J O HOH . B HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc28 E CA CA . B CA 203 1_555 J O HOH . B HOH 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc29 E CA CA . B CA 203 1_555 J O HOH . B HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc30 F CA CA . B CA 204 1_555 H O ACT . B ACT 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc31 F CA CA . B CA 204 1_555 H OXT ACT . B ACT 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc32 F CA CA . B CA 204 1_555 J O HOH . B HOH 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc33 G CA CA . B CA 205 1_555 J O HOH . B HOH 333 4_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc34 G CA CA . B CA 205 1_555 J O HOH . B HOH 359 4_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc35 G CA CA . B CA 205 1_555 J O HOH . B HOH 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc36 G CA CA . B CA 205 1_555 J O HOH . B HOH 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5J03 _atom_sites.fract_transf_matrix[1][1] 0.02098 _atom_sites.fract_transf_matrix[1][2] 0.012113 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024225 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA B 1 201 201 CA CA . D 3 CA B 1 202 202 CA CA . E 3 CA B 1 203 203 CA CA . F 3 CA B 1 204 204 CA CA . G 3 CA B 1 205 5 CA CA . H 4 ACT B 1 206 1 ACT ACT . I 5 HOH A 1 601 124 HOH HOH . I 5 HOH A 2 602 111 HOH HOH . I 5 HOH A 3 603 76 HOH HOH . I 5 HOH A 4 604 131 HOH HOH . I 5 HOH A 5 605 130 HOH HOH . I 5 HOH A 6 606 87 HOH HOH . I 5 HOH A 7 607 72 HOH HOH . I 5 HOH A 8 608 59 HOH HOH . I 5 HOH A 9 609 68 HOH HOH . I 5 HOH A 10 610 40 HOH HOH . I 5 HOH A 11 611 7 HOH HOH . I 5 HOH A 12 612 58 HOH HOH . I 5 HOH A 13 613 109 HOH HOH . I 5 HOH A 14 614 8 HOH HOH . I 5 HOH A 15 615 24 HOH HOH . I 5 HOH A 16 616 28 HOH HOH . I 5 HOH A 17 617 132 HOH HOH . I 5 HOH A 18 618 13 HOH HOH . I 5 HOH A 19 619 9 HOH HOH . I 5 HOH A 20 620 55 HOH HOH . I 5 HOH A 21 621 84 HOH HOH . I 5 HOH A 22 622 65 HOH HOH . I 5 HOH A 23 623 51 HOH HOH . I 5 HOH A 24 624 37 HOH HOH . I 5 HOH A 25 625 44 HOH HOH . I 5 HOH A 26 626 107 HOH HOH . I 5 HOH A 27 627 128 HOH HOH . I 5 HOH A 28 628 20 HOH HOH . I 5 HOH A 29 629 10 HOH HOH . I 5 HOH A 30 630 119 HOH HOH . I 5 HOH A 31 631 74 HOH HOH . I 5 HOH A 32 632 86 HOH HOH . I 5 HOH A 33 633 46 HOH HOH . I 5 HOH A 34 634 123 HOH HOH . I 5 HOH A 35 635 108 HOH HOH . I 5 HOH A 36 636 105 HOH HOH . I 5 HOH A 37 637 77 HOH HOH . I 5 HOH A 38 638 23 HOH HOH . I 5 HOH A 39 639 6 HOH HOH . I 5 HOH A 40 640 79 HOH HOH . J 5 HOH B 1 301 133 HOH HOH . J 5 HOH B 2 302 57 HOH HOH . J 5 HOH B 3 303 134 HOH HOH . J 5 HOH B 4 304 104 HOH HOH . J 5 HOH B 5 305 112 HOH HOH . J 5 HOH B 6 306 118 HOH HOH . J 5 HOH B 7 307 122 HOH HOH . J 5 HOH B 8 308 34 HOH HOH . J 5 HOH B 9 309 103 HOH HOH . J 5 HOH B 10 310 48 HOH HOH . J 5 HOH B 11 311 110 HOH HOH . J 5 HOH B 12 312 93 HOH HOH . J 5 HOH B 13 313 18 HOH HOH . J 5 HOH B 14 314 115 HOH HOH . J 5 HOH B 15 315 1 HOH HOH . J 5 HOH B 16 316 30 HOH HOH . J 5 HOH B 17 317 69 HOH HOH . J 5 HOH B 18 318 106 HOH HOH . J 5 HOH B 19 319 41 HOH HOH . J 5 HOH B 20 320 73 HOH HOH . J 5 HOH B 21 321 80 HOH HOH . J 5 HOH B 22 322 5 HOH HOH . J 5 HOH B 23 323 35 HOH HOH . J 5 HOH B 24 324 64 HOH HOH . J 5 HOH B 25 325 38 HOH HOH . J 5 HOH B 26 326 125 HOH HOH . J 5 HOH B 27 327 66 HOH HOH . J 5 HOH B 28 328 21 HOH HOH . J 5 HOH B 29 329 15 HOH HOH . J 5 HOH B 30 330 54 HOH HOH . J 5 HOH B 31 331 83 HOH HOH . J 5 HOH B 32 332 102 HOH HOH . J 5 HOH B 33 333 12 HOH HOH . J 5 HOH B 34 334 78 HOH HOH . J 5 HOH B 35 335 39 HOH HOH . J 5 HOH B 36 336 56 HOH HOH . J 5 HOH B 37 337 14 HOH HOH . J 5 HOH B 38 338 47 HOH HOH . J 5 HOH B 39 339 60 HOH HOH . J 5 HOH B 40 340 63 HOH HOH . J 5 HOH B 41 341 70 HOH HOH . J 5 HOH B 42 342 19 HOH HOH . J 5 HOH B 43 343 96 HOH HOH . J 5 HOH B 44 344 99 HOH HOH . J 5 HOH B 45 345 27 HOH HOH . J 5 HOH B 46 346 3 HOH HOH . J 5 HOH B 47 347 82 HOH HOH . J 5 HOH B 48 348 29 HOH HOH . J 5 HOH B 49 349 25 HOH HOH . J 5 HOH B 50 350 16 HOH HOH . J 5 HOH B 51 351 135 HOH HOH . J 5 HOH B 52 352 11 HOH HOH . J 5 HOH B 53 353 81 HOH HOH . J 5 HOH B 54 354 53 HOH HOH . J 5 HOH B 55 355 42 HOH HOH . J 5 HOH B 56 356 116 HOH HOH . J 5 HOH B 57 357 50 HOH HOH . J 5 HOH B 58 358 85 HOH HOH . J 5 HOH B 59 359 31 HOH HOH . J 5 HOH B 60 360 121 HOH HOH . J 5 HOH B 61 361 32 HOH HOH . J 5 HOH B 62 362 52 HOH HOH . J 5 HOH B 63 363 62 HOH HOH . J 5 HOH B 64 364 101 HOH HOH . J 5 HOH B 65 365 22 HOH HOH . J 5 HOH B 66 366 61 HOH HOH . J 5 HOH B 67 367 45 HOH HOH . J 5 HOH B 68 368 17 HOH HOH . J 5 HOH B 69 369 100 HOH HOH . J 5 HOH B 70 370 75 HOH HOH . J 5 HOH B 71 371 26 HOH HOH . J 5 HOH B 72 372 95 HOH HOH . J 5 HOH B 73 373 90 HOH HOH . J 5 HOH B 74 374 67 HOH HOH . J 5 HOH B 75 375 127 HOH HOH . J 5 HOH B 76 376 126 HOH HOH . J 5 HOH B 77 377 2 HOH HOH . J 5 HOH B 78 378 4 HOH HOH . J 5 HOH B 79 379 36 HOH HOH . J 5 HOH B 80 380 92 HOH HOH . J 5 HOH B 81 381 120 HOH HOH . J 5 HOH B 82 382 94 HOH HOH . J 5 HOH B 83 383 114 HOH HOH . J 5 HOH B 84 384 33 HOH HOH . J 5 HOH B 85 385 49 HOH HOH . J 5 HOH B 86 386 88 HOH HOH . J 5 HOH B 87 387 97 HOH HOH . J 5 HOH B 88 388 117 HOH HOH . J 5 HOH B 89 389 98 HOH HOH . J 5 HOH B 90 390 43 HOH HOH . J 5 HOH B 91 391 89 HOH HOH . J 5 HOH B 92 392 113 HOH HOH . J 5 HOH B 93 393 91 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 32.892 _atom_site.Cartn_y 11.492 _atom_site.Cartn_z 35.914 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.82 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 202 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 1 #