data_5J0D # _model_server_result.job_id -fDgAd8yfzbSTnr8mdbIOQ _model_server_result.datetime_utc '2024-10-12 14:31:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j0d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 5J0D # _exptl.entry_id 5J0D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 481.584 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-(3,5-dimethoxyphenyl)-N-[(3S)-1-methylpiperidin-3-yl]-4-propanoyl-2,3,4,5-tetrahydro-1,4-benzoxazepine-9-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.32 _cell.angle_gamma 90 _cell.entry_id 5J0D _cell.length_a 89.913 _cell.length_b 34.848 _cell.length_c 40.267 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J0D _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H35 N3 O5' _chem_comp.formula_weight 481.584 _chem_comp.id 6F9 _chem_comp.mon_nstd_flag . _chem_comp.name 7-(3,5-dimethoxyphenyl)-N-[(3S)-1-methylpiperidin-3-yl]-4-propanoyl-2,3,4,5-tetrahydro-1,4-benzoxazepine-9-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 O3 6F9 sing 1 n n O3 C21 6F9 sing 2 n n C21 C22 6F9 doub 3 n y C21 C20 6F9 sing 4 n y C22 C23 6F9 sing 5 n y C25 O2 6F9 sing 6 n n C C1 6F9 sing 7 n n C20 C19 6F9 doub 8 n y C23 O2 6F9 sing 9 n n C23 C24 6F9 doub 10 n y C1 C2 6F9 sing 11 n n C19 C24 6F9 sing 12 n y C19 C9 6F9 sing 13 n n C8 C9 6F9 doub 14 n y C8 C6 6F9 sing 15 n y C9 C10 6F9 sing 16 n y C2 O4 6F9 doub 17 n n C2 N 6F9 sing 18 n n C7 C6 6F9 sing 19 n n C7 N 6F9 sing 20 n n C6 C5 6F9 doub 21 n y N C3 6F9 sing 22 n n C10 C11 6F9 doub 23 n y C5 C11 6F9 sing 24 n y C5 O 6F9 sing 25 n n C3 C4 6F9 sing 26 n n C11 C12 6F9 sing 27 n n O C4 6F9 sing 28 n n C12 N1 6F9 sing 29 n n C12 O1 6F9 doub 30 n n N1 C13 6F9 sing 31 n n C13 C18 6F9 sing 32 n n C13 C14 6F9 sing 33 n n C18 N2 6F9 sing 34 n n C14 C15 6F9 sing 35 n n N2 C17 6F9 sing 36 n n N2 C16 6F9 sing 37 n n C15 C16 6F9 sing 38 n n C4 H1 6F9 sing 39 n n C4 H2 6F9 sing 40 n n N1 H3 6F9 sing 41 n n C7 H4 6F9 sing 42 n n C7 H5 6F9 sing 43 n n C8 H6 6F9 sing 44 n n C10 H8 6F9 sing 45 n n C13 H9 6F9 sing 46 n n C14 H10 6F9 sing 47 n n C14 H11 6F9 sing 48 n n C15 H12 6F9 sing 49 n n C15 H13 6F9 sing 50 n n C1 H14 6F9 sing 51 n n C1 H15 6F9 sing 52 n n C H16 6F9 sing 53 n n C H17 6F9 sing 54 n n C H18 6F9 sing 55 n n C24 H19 6F9 sing 56 n n C25 H20 6F9 sing 57 n n C25 H21 6F9 sing 58 n n C25 H22 6F9 sing 59 n n C22 H23 6F9 sing 60 n n C26 H24 6F9 sing 61 n n C26 H25 6F9 sing 62 n n C26 H26 6F9 sing 63 n n C20 H27 6F9 sing 64 n n C3 H28 6F9 sing 65 n n C3 H29 6F9 sing 66 n n C18 H30 6F9 sing 67 n n C18 H31 6F9 sing 68 n n C17 H32 6F9 sing 69 n n C17 H33 6F9 sing 70 n n C17 H34 6F9 sing 71 n n C16 H35 6F9 sing 72 n n C16 H36 6F9 sing 73 n n # _atom_sites.entry_id 5J0D _atom_sites.fract_transf_matrix[1][1] 0.011122 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000451 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028696 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6F9 A 1 1201 1 6F9 XXX . C 3 EDO A 1 1202 1 EDO EDO . D 3 EDO A 1 1203 2 EDO EDO . E 3 EDO A 1 1204 3 EDO EDO . F 4 HOH A 1 1301 107 HOH HOH . F 4 HOH A 2 1302 79 HOH HOH . F 4 HOH A 3 1303 121 HOH HOH . F 4 HOH A 4 1304 97 HOH HOH . F 4 HOH A 5 1305 108 HOH HOH . F 4 HOH A 6 1306 4 HOH HOH . F 4 HOH A 7 1307 25 HOH HOH . F 4 HOH A 8 1308 62 HOH HOH . F 4 HOH A 9 1309 83 HOH HOH . F 4 HOH A 10 1310 86 HOH HOH . F 4 HOH A 11 1311 63 HOH HOH . F 4 HOH A 12 1312 17 HOH HOH . F 4 HOH A 13 1313 9 HOH HOH . F 4 HOH A 14 1314 30 HOH HOH . F 4 HOH A 15 1315 126 HOH HOH . F 4 HOH A 16 1316 118 HOH HOH . F 4 HOH A 17 1317 72 HOH HOH . F 4 HOH A 18 1318 36 HOH HOH . F 4 HOH A 19 1319 11 HOH HOH . F 4 HOH A 20 1320 19 HOH HOH . F 4 HOH A 21 1321 37 HOH HOH . F 4 HOH A 22 1322 66 HOH HOH . F 4 HOH A 23 1323 3 HOH HOH . F 4 HOH A 24 1324 39 HOH HOH . F 4 HOH A 25 1325 69 HOH HOH . F 4 HOH A 26 1326 60 HOH HOH . F 4 HOH A 27 1327 76 HOH HOH . F 4 HOH A 28 1328 105 HOH HOH . F 4 HOH A 29 1329 96 HOH HOH . F 4 HOH A 30 1330 42 HOH HOH . F 4 HOH A 31 1331 29 HOH HOH . F 4 HOH A 32 1332 18 HOH HOH . F 4 HOH A 33 1333 32 HOH HOH . F 4 HOH A 34 1334 54 HOH HOH . F 4 HOH A 35 1335 82 HOH HOH . F 4 HOH A 36 1336 106 HOH HOH . F 4 HOH A 37 1337 58 HOH HOH . F 4 HOH A 38 1338 50 HOH HOH . F 4 HOH A 39 1339 31 HOH HOH . F 4 HOH A 40 1340 61 HOH HOH . F 4 HOH A 41 1341 16 HOH HOH . F 4 HOH A 42 1342 24 HOH HOH . F 4 HOH A 43 1343 2 HOH HOH . F 4 HOH A 44 1344 8 HOH HOH . F 4 HOH A 45 1345 26 HOH HOH . F 4 HOH A 46 1346 33 HOH HOH . F 4 HOH A 47 1347 14 HOH HOH . F 4 HOH A 48 1348 71 HOH HOH . F 4 HOH A 49 1349 85 HOH HOH . F 4 HOH A 50 1350 1 HOH HOH . F 4 HOH A 51 1351 70 HOH HOH . F 4 HOH A 52 1352 46 HOH HOH . F 4 HOH A 53 1353 22 HOH HOH . F 4 HOH A 54 1354 7 HOH HOH . F 4 HOH A 55 1355 84 HOH HOH . F 4 HOH A 56 1356 56 HOH HOH . F 4 HOH A 57 1357 124 HOH HOH . F 4 HOH A 58 1358 75 HOH HOH . F 4 HOH A 59 1359 12 HOH HOH . F 4 HOH A 60 1360 64 HOH HOH . F 4 HOH A 61 1361 15 HOH HOH . F 4 HOH A 62 1362 73 HOH HOH . F 4 HOH A 63 1363 38 HOH HOH . F 4 HOH A 64 1364 5 HOH HOH . F 4 HOH A 65 1365 55 HOH HOH . F 4 HOH A 66 1366 51 HOH HOH . F 4 HOH A 67 1367 101 HOH HOH . F 4 HOH A 68 1368 27 HOH HOH . F 4 HOH A 69 1369 23 HOH HOH . F 4 HOH A 70 1370 52 HOH HOH . F 4 HOH A 71 1371 68 HOH HOH . F 4 HOH A 72 1372 34 HOH HOH . F 4 HOH A 73 1373 122 HOH HOH . F 4 HOH A 74 1374 53 HOH HOH . F 4 HOH A 75 1375 95 HOH HOH . F 4 HOH A 76 1376 127 HOH HOH . F 4 HOH A 77 1377 59 HOH HOH . F 4 HOH A 78 1378 80 HOH HOH . F 4 HOH A 79 1379 98 HOH HOH . F 4 HOH A 80 1380 45 HOH HOH . F 4 HOH A 81 1381 65 HOH HOH . F 4 HOH A 82 1382 21 HOH HOH . F 4 HOH A 83 1383 20 HOH HOH . F 4 HOH A 84 1384 81 HOH HOH . F 4 HOH A 85 1385 92 HOH HOH . F 4 HOH A 86 1386 10 HOH HOH . F 4 HOH A 87 1387 44 HOH HOH . F 4 HOH A 88 1388 109 HOH HOH . F 4 HOH A 89 1389 6 HOH HOH . F 4 HOH A 90 1390 74 HOH HOH . F 4 HOH A 91 1391 119 HOH HOH . F 4 HOH A 92 1392 77 HOH HOH . F 4 HOH A 93 1393 67 HOH HOH . F 4 HOH A 94 1394 78 HOH HOH . F 4 HOH A 95 1395 57 HOH HOH . F 4 HOH A 96 1396 87 HOH HOH . F 4 HOH A 97 1397 40 HOH HOH . F 4 HOH A 98 1398 100 HOH HOH . F 4 HOH A 99 1399 115 HOH HOH . F 4 HOH A 100 1400 114 HOH HOH . F 4 HOH A 101 1401 112 HOH HOH . F 4 HOH A 102 1402 113 HOH HOH . F 4 HOH A 103 1403 116 HOH HOH . F 4 HOH A 104 1404 110 HOH HOH . F 4 HOH A 105 1405 41 HOH HOH . F 4 HOH A 106 1406 103 HOH HOH . F 4 HOH A 107 1407 90 HOH HOH . F 4 HOH A 108 1408 125 HOH HOH . F 4 HOH A 109 1409 117 HOH HOH . F 4 HOH A 110 1410 93 HOH HOH . F 4 HOH A 111 1411 91 HOH HOH . F 4 HOH A 112 1412 47 HOH HOH . F 4 HOH A 113 1413 48 HOH HOH . F 4 HOH A 114 1414 49 HOH HOH . F 4 HOH A 115 1415 43 HOH HOH . F 4 HOH A 116 1416 94 HOH HOH . F 4 HOH A 117 1417 111 HOH HOH . F 4 HOH A 118 1418 28 HOH HOH . F 4 HOH A 119 1419 88 HOH HOH . F 4 HOH A 120 1420 102 HOH HOH . F 4 HOH A 121 1421 120 HOH HOH . F 4 HOH A 122 1422 13 HOH HOH . F 4 HOH A 123 1423 89 HOH HOH . F 4 HOH A 124 1424 99 HOH HOH . F 4 HOH A 125 1425 123 HOH HOH . F 4 HOH A 126 1426 104 HOH HOH . F 4 HOH A 127 1427 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 6F9 . . . B 2 12.326 12.113 18.624 1 17.69 ? O3 6F9 1201 A 1 HETATM 2 C C4 6F9 . . . B 2 10.935 18.014 26.064 1 15.3 ? C4 6F9 1201 A 1 HETATM 3 C C5 6F9 . . . B 2 11.236 15.911 24.97 1 16.02 ? C5 6F9 1201 A 1 HETATM 4 O O4 6F9 . . . B 2 11.313 20.609 23.425 1 12.36 ? O4 6F9 1201 A 1 HETATM 5 C C6 6F9 . . . B 2 10.951 16.187 23.639 1 14.68 ? C6 6F9 1201 A 1 HETATM 6 N N1 6F9 . . . B 2 12.087 13.394 27.219 1 25.43 ? N1 6F9 1201 A 1 HETATM 7 C C7 6F9 . . . B 2 9.953 17.258 23.273 1 14.15 ? C7 6F9 1201 A 1 HETATM 8 C C8 6F9 . . . B 2 11.599 15.456 22.653 1 14.89 ? C8 6F9 1201 A 1 HETATM 9 N N2 6F9 . . . B 2 11.708 11.225 30.243 1 33.98 ? N2 6F9 1201 A 1 HETATM 10 C C9 6F9 . . . B 2 12.522 14.457 22.971 1 15.16 ? C9 6F9 1201 A 1 HETATM 11 C C10 6F9 . . . B 2 12.796 14.2 24.321 1 15.91 ? C10 6F9 1201 A 1 HETATM 12 C C11 6F9 . . . B 2 12.154 14.925 25.337 1 17.06 ? C11 6F9 1201 A 1 HETATM 13 C C12 6F9 . . . B 2 12.437 14.607 26.774 1 21.21 ? C12 6F9 1201 A 1 HETATM 14 C C13 6F9 . . . B 2 12.029 13.069 28.647 1 29.97 ? C13 6F9 1201 A 1 HETATM 15 C C14 6F9 . . . B 2 10.938 13.864 29.353 1 31.88 ? C14 6F9 1201 A 1 HETATM 16 C C15 6F9 . . . B 2 10.814 13.453 30.819 1 33.56 ? C15 6F9 1201 A 1 HETATM 17 C C2 6F9 . . . B 2 10.984 19.513 22.976 1 12.05 ? C2 6F9 1201 A 1 HETATM 18 C C1 6F9 . . . B 2 11.315 19.145 21.542 1 12.58 ? C1 6F9 1201 A 1 HETATM 19 C C 6F9 . . . B 2 11.753 20.294 20.689 1 12.1 ? C 6F9 1201 A 1 HETATM 20 N N 6F9 . . . B 2 10.365 18.591 23.739 1 13.78 ? N 6F9 1201 A 1 HETATM 21 C C19 6F9 . . . B 2 13.143 13.649 21.89 1 15.17 ? C19 6F9 1201 A 1 HETATM 22 C C24 6F9 . . . B 2 14.493 13.281 21.933 1 15.66 ? C24 6F9 1201 A 1 HETATM 23 C C23 6F9 . . . B 2 15.055 12.564 20.883 1 16.26 ? C23 6F9 1201 A 1 HETATM 24 O O2 6F9 . . . B 2 16.377 12.244 21.031 1 16.97 ? O2 6F9 1201 A 1 HETATM 25 C C25 6F9 . . . B 2 17 11.366 20.096 1 17.61 ? C25 6F9 1201 A 1 HETATM 26 C C22 6F9 . . . B 2 14.29 12.193 19.786 1 16.5 ? C22 6F9 1201 A 1 HETATM 27 C C21 6F9 . . . B 2 12.958 12.553 19.755 1 16.29 ? C21 6F9 1201 A 1 HETATM 28 C C26 6F9 . . . B 2 10.918 12.299 18.497 1 16.76 ? C26 6F9 1201 A 1 HETATM 29 C C20 6F9 . . . B 2 12.38 13.267 20.79 1 15.75 ? C20 6F9 1201 A 1 HETATM 30 O O 6F9 . . . B 2 10.59 16.617 25.963 1 15.52 ? O 6F9 1201 A 1 HETATM 31 C C3 6F9 . . . B 2 10.07 18.856 25.154 1 14.88 ? C3 6F9 1201 A 1 HETATM 32 O O1 6F9 . . . B 2 12.877 15.468 27.526 1 24.69 ? O1 6F9 1201 A 1 HETATM 33 C C18 6F9 . . . B 2 11.708 11.595 28.827 1 32 ? C18 6F9 1201 A 1 HETATM 34 C C17 6F9 . . . B 2 11.538 9.77 30.396 1 35.5 ? C17 6F9 1201 A 1 HETATM 35 C C16 6F9 . . . B 2 10.653 11.95 30.949 1 34.28 ? C16 6F9 1201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #