data_5J0D
#
_model_server_result.job_id            u4mfVlK22tNVgjx_rDt3Zw 
_model_server_result.datetime_utc      '2024-10-12 14:27:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5j0d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1202}' 
#
_entry.id    5J0D 
#
_exptl.entry_id    5J0D 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.32 
_cell.angle_gamma         90 
_cell.entry_id            5J0D 
_cell.length_a            89.913 
_cell.length_b            34.848 
_cell.length_c            40.267 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5J0D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 156 n n 
C1 C2 EDO sing 157 n n 
C1 H11 EDO sing 158 n n 
C1 H12 EDO sing 159 n n 
O1 HO1 EDO sing 160 n n 
C2 O2 EDO sing 161 n n 
C2 H21 EDO sing 162 n n 
C2 H22 EDO sing 163 n n 
O2 HO2 EDO sing 164 n n 
#
_atom_sites.entry_id                     5J0D 
_atom_sites.fract_transf_matrix[1][1]    0.011122 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000451 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.028696 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024855 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 6F9 A 1 1201 1 6F9 XXX . 
C 3 EDO A 1 1202 1 EDO EDO . 
D 3 EDO A 1 1203 2 EDO EDO . 
E 3 EDO A 1 1204 3 EDO EDO . 
F 4 HOH A 1 1301 107 HOH HOH . 
F 4 HOH A 2 1302 79 HOH HOH . 
F 4 HOH A 3 1303 121 HOH HOH . 
F 4 HOH A 4 1304 97 HOH HOH . 
F 4 HOH A 5 1305 108 HOH HOH . 
F 4 HOH A 6 1306 4 HOH HOH . 
F 4 HOH A 7 1307 25 HOH HOH . 
F 4 HOH A 8 1308 62 HOH HOH . 
F 4 HOH A 9 1309 83 HOH HOH . 
F 4 HOH A 10 1310 86 HOH HOH . 
F 4 HOH A 11 1311 63 HOH HOH . 
F 4 HOH A 12 1312 17 HOH HOH . 
F 4 HOH A 13 1313 9 HOH HOH . 
F 4 HOH A 14 1314 30 HOH HOH . 
F 4 HOH A 15 1315 126 HOH HOH . 
F 4 HOH A 16 1316 118 HOH HOH . 
F 4 HOH A 17 1317 72 HOH HOH . 
F 4 HOH A 18 1318 36 HOH HOH . 
F 4 HOH A 19 1319 11 HOH HOH . 
F 4 HOH A 20 1320 19 HOH HOH . 
F 4 HOH A 21 1321 37 HOH HOH . 
F 4 HOH A 22 1322 66 HOH HOH . 
F 4 HOH A 23 1323 3 HOH HOH . 
F 4 HOH A 24 1324 39 HOH HOH . 
F 4 HOH A 25 1325 69 HOH HOH . 
F 4 HOH A 26 1326 60 HOH HOH . 
F 4 HOH A 27 1327 76 HOH HOH . 
F 4 HOH A 28 1328 105 HOH HOH . 
F 4 HOH A 29 1329 96 HOH HOH . 
F 4 HOH A 30 1330 42 HOH HOH . 
F 4 HOH A 31 1331 29 HOH HOH . 
F 4 HOH A 32 1332 18 HOH HOH . 
F 4 HOH A 33 1333 32 HOH HOH . 
F 4 HOH A 34 1334 54 HOH HOH . 
F 4 HOH A 35 1335 82 HOH HOH . 
F 4 HOH A 36 1336 106 HOH HOH . 
F 4 HOH A 37 1337 58 HOH HOH . 
F 4 HOH A 38 1338 50 HOH HOH . 
F 4 HOH A 39 1339 31 HOH HOH . 
F 4 HOH A 40 1340 61 HOH HOH . 
F 4 HOH A 41 1341 16 HOH HOH . 
F 4 HOH A 42 1342 24 HOH HOH . 
F 4 HOH A 43 1343 2 HOH HOH . 
F 4 HOH A 44 1344 8 HOH HOH . 
F 4 HOH A 45 1345 26 HOH HOH . 
F 4 HOH A 46 1346 33 HOH HOH . 
F 4 HOH A 47 1347 14 HOH HOH . 
F 4 HOH A 48 1348 71 HOH HOH . 
F 4 HOH A 49 1349 85 HOH HOH . 
F 4 HOH A 50 1350 1 HOH HOH . 
F 4 HOH A 51 1351 70 HOH HOH . 
F 4 HOH A 52 1352 46 HOH HOH . 
F 4 HOH A 53 1353 22 HOH HOH . 
F 4 HOH A 54 1354 7 HOH HOH . 
F 4 HOH A 55 1355 84 HOH HOH . 
F 4 HOH A 56 1356 56 HOH HOH . 
F 4 HOH A 57 1357 124 HOH HOH . 
F 4 HOH A 58 1358 75 HOH HOH . 
F 4 HOH A 59 1359 12 HOH HOH . 
F 4 HOH A 60 1360 64 HOH HOH . 
F 4 HOH A 61 1361 15 HOH HOH . 
F 4 HOH A 62 1362 73 HOH HOH . 
F 4 HOH A 63 1363 38 HOH HOH . 
F 4 HOH A 64 1364 5 HOH HOH . 
F 4 HOH A 65 1365 55 HOH HOH . 
F 4 HOH A 66 1366 51 HOH HOH . 
F 4 HOH A 67 1367 101 HOH HOH . 
F 4 HOH A 68 1368 27 HOH HOH . 
F 4 HOH A 69 1369 23 HOH HOH . 
F 4 HOH A 70 1370 52 HOH HOH . 
F 4 HOH A 71 1371 68 HOH HOH . 
F 4 HOH A 72 1372 34 HOH HOH . 
F 4 HOH A 73 1373 122 HOH HOH . 
F 4 HOH A 74 1374 53 HOH HOH . 
F 4 HOH A 75 1375 95 HOH HOH . 
F 4 HOH A 76 1376 127 HOH HOH . 
F 4 HOH A 77 1377 59 HOH HOH . 
F 4 HOH A 78 1378 80 HOH HOH . 
F 4 HOH A 79 1379 98 HOH HOH . 
F 4 HOH A 80 1380 45 HOH HOH . 
F 4 HOH A 81 1381 65 HOH HOH . 
F 4 HOH A 82 1382 21 HOH HOH . 
F 4 HOH A 83 1383 20 HOH HOH . 
F 4 HOH A 84 1384 81 HOH HOH . 
F 4 HOH A 85 1385 92 HOH HOH . 
F 4 HOH A 86 1386 10 HOH HOH . 
F 4 HOH A 87 1387 44 HOH HOH . 
F 4 HOH A 88 1388 109 HOH HOH . 
F 4 HOH A 89 1389 6 HOH HOH . 
F 4 HOH A 90 1390 74 HOH HOH . 
F 4 HOH A 91 1391 119 HOH HOH . 
F 4 HOH A 92 1392 77 HOH HOH . 
F 4 HOH A 93 1393 67 HOH HOH . 
F 4 HOH A 94 1394 78 HOH HOH . 
F 4 HOH A 95 1395 57 HOH HOH . 
F 4 HOH A 96 1396 87 HOH HOH . 
F 4 HOH A 97 1397 40 HOH HOH . 
F 4 HOH A 98 1398 100 HOH HOH . 
F 4 HOH A 99 1399 115 HOH HOH . 
F 4 HOH A 100 1400 114 HOH HOH . 
F 4 HOH A 101 1401 112 HOH HOH . 
F 4 HOH A 102 1402 113 HOH HOH . 
F 4 HOH A 103 1403 116 HOH HOH . 
F 4 HOH A 104 1404 110 HOH HOH . 
F 4 HOH A 105 1405 41 HOH HOH . 
F 4 HOH A 106 1406 103 HOH HOH . 
F 4 HOH A 107 1407 90 HOH HOH . 
F 4 HOH A 108 1408 125 HOH HOH . 
F 4 HOH A 109 1409 117 HOH HOH . 
F 4 HOH A 110 1410 93 HOH HOH . 
F 4 HOH A 111 1411 91 HOH HOH . 
F 4 HOH A 112 1412 47 HOH HOH . 
F 4 HOH A 113 1413 48 HOH HOH . 
F 4 HOH A 114 1414 49 HOH HOH . 
F 4 HOH A 115 1415 43 HOH HOH . 
F 4 HOH A 116 1416 94 HOH HOH . 
F 4 HOH A 117 1417 111 HOH HOH . 
F 4 HOH A 118 1418 28 HOH HOH . 
F 4 HOH A 119 1419 88 HOH HOH . 
F 4 HOH A 120 1420 102 HOH HOH . 
F 4 HOH A 121 1421 120 HOH HOH . 
F 4 HOH A 122 1422 13 HOH HOH . 
F 4 HOH A 123 1423 89 HOH HOH . 
F 4 HOH A 124 1424 99 HOH HOH . 
F 4 HOH A 125 1425 123 HOH HOH . 
F 4 HOH A 126 1426 104 HOH HOH . 
F 4 HOH A 127 1427 35 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 3 2.533 33.839 9.093 1 35.95 ? C1 EDO 1202 A 1 
HETATM 2 O O1 EDO . . . C 3 1.746 33.3 10.161 1 37.64 ? O1 EDO 1202 A 1 
HETATM 3 C C2 EDO . . . C 3 3.656 34.696 9.659 1 35.47 ? C2 EDO 1202 A 1 
HETATM 4 O O2 EDO . . . C 3 4.505 33.875 10.464 1 34.52 ? O2 EDO 1202 A 1 
#
_model_server_stats.io_time_ms              78 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#