data_5J0F
#
_model_server_result.job_id            Ob7rBRGDuHBMoSYzmBcchQ 
_model_server_result.datetime_utc      '2024-11-22 21:05:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5j0f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":202}' 
#
_entry.id    5J0F 
#
_exptl.entry_id    5J0F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5J0F 
_cell.length_a            71.72 
_cell.length_b            71.72 
_cell.length_c            69.51 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5J0F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,H 1 1 
B,F,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5J0F 
_atom_sites.fract_transf_matrix[1][1]    0.013943 
_atom_sites.fract_transf_matrix[1][2]    0.00805 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0161 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014386 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 201 1 GOL GOL . 
D 2 GOL A 1 202 3 GOL GOL . 
E 2 GOL A 1 203 5 GOL GOL . 
F 2 GOL B 1 201 2 GOL GOL . 
G 2 GOL B 1 202 4 GOL GOL . 
H 3 HOH A 1 301 200 HOH HOH . 
H 3 HOH A 2 302 152 HOH HOH . 
H 3 HOH A 3 303 315 HOH HOH . 
H 3 HOH A 4 304 121 HOH HOH . 
H 3 HOH A 5 305 180 HOH HOH . 
H 3 HOH A 6 306 314 HOH HOH . 
H 3 HOH A 7 307 7 HOH HOH . 
H 3 HOH A 8 308 119 HOH HOH . 
H 3 HOH A 9 309 173 HOH HOH . 
H 3 HOH A 10 310 29 HOH HOH . 
H 3 HOH A 11 311 69 HOH HOH . 
H 3 HOH A 12 312 86 HOH HOH . 
H 3 HOH A 13 313 82 HOH HOH . 
H 3 HOH A 14 314 38 HOH HOH . 
H 3 HOH A 15 315 66 HOH HOH . 
H 3 HOH A 16 316 127 HOH HOH . 
H 3 HOH A 17 317 72 HOH HOH . 
H 3 HOH A 18 318 91 HOH HOH . 
H 3 HOH A 19 319 11 HOH HOH . 
H 3 HOH A 20 320 5 HOH HOH . 
H 3 HOH A 21 321 30 HOH HOH . 
H 3 HOH A 22 322 87 HOH HOH . 
H 3 HOH A 23 323 156 HOH HOH . 
H 3 HOH A 24 324 186 HOH HOH . 
H 3 HOH A 25 325 115 HOH HOH . 
H 3 HOH A 26 326 3 HOH HOH . 
H 3 HOH A 27 327 227 HOH HOH . 
H 3 HOH A 28 328 97 HOH HOH . 
H 3 HOH A 29 329 103 HOH HOH . 
H 3 HOH A 30 330 191 HOH HOH . 
H 3 HOH A 31 331 183 HOH HOH . 
H 3 HOH A 32 332 210 HOH HOH . 
H 3 HOH A 33 333 41 HOH HOH . 
H 3 HOH A 34 334 74 HOH HOH . 
H 3 HOH A 35 335 12 HOH HOH . 
H 3 HOH A 36 336 71 HOH HOH . 
H 3 HOH A 37 337 64 HOH HOH . 
H 3 HOH A 38 338 8 HOH HOH . 
H 3 HOH A 39 339 2 HOH HOH . 
H 3 HOH A 40 340 26 HOH HOH . 
H 3 HOH A 41 341 108 HOH HOH . 
H 3 HOH A 42 342 194 HOH HOH . 
H 3 HOH A 43 343 37 HOH HOH . 
H 3 HOH A 44 344 245 HOH HOH . 
H 3 HOH A 45 345 84 HOH HOH . 
H 3 HOH A 46 346 16 HOH HOH . 
H 3 HOH A 47 347 158 HOH HOH . 
H 3 HOH A 48 348 312 HOH HOH . 
H 3 HOH A 49 349 55 HOH HOH . 
H 3 HOH A 50 350 42 HOH HOH . 
H 3 HOH A 51 351 167 HOH HOH . 
H 3 HOH A 52 352 77 HOH HOH . 
H 3 HOH A 53 353 22 HOH HOH . 
H 3 HOH A 54 354 145 HOH HOH . 
H 3 HOH A 55 355 110 HOH HOH . 
H 3 HOH A 56 356 49 HOH HOH . 
H 3 HOH A 57 357 52 HOH HOH . 
H 3 HOH A 58 358 238 HOH HOH . 
H 3 HOH A 59 359 106 HOH HOH . 
H 3 HOH A 60 360 116 HOH HOH . 
H 3 HOH A 61 361 270 HOH HOH . 
H 3 HOH A 62 362 92 HOH HOH . 
H 3 HOH A 63 363 243 HOH HOH . 
H 3 HOH A 64 364 124 HOH HOH . 
H 3 HOH A 65 365 247 HOH HOH . 
H 3 HOH A 66 366 177 HOH HOH . 
H 3 HOH A 67 367 111 HOH HOH . 
H 3 HOH A 68 368 239 HOH HOH . 
H 3 HOH A 69 369 57 HOH HOH . 
H 3 HOH A 70 370 262 HOH HOH . 
H 3 HOH A 71 371 17 HOH HOH . 
H 3 HOH A 72 372 27 HOH HOH . 
H 3 HOH A 73 373 122 HOH HOH . 
H 3 HOH A 74 374 185 HOH HOH . 
H 3 HOH A 75 375 137 HOH HOH . 
H 3 HOH A 76 376 90 HOH HOH . 
H 3 HOH A 77 377 19 HOH HOH . 
H 3 HOH A 78 378 98 HOH HOH . 
H 3 HOH A 79 379 33 HOH HOH . 
H 3 HOH A 80 380 23 HOH HOH . 
H 3 HOH A 81 381 62 HOH HOH . 
H 3 HOH A 82 382 175 HOH HOH . 
H 3 HOH A 83 383 32 HOH HOH . 
H 3 HOH A 84 384 102 HOH HOH . 
H 3 HOH A 85 385 46 HOH HOH . 
H 3 HOH A 86 386 305 HOH HOH . 
H 3 HOH A 87 387 104 HOH HOH . 
H 3 HOH A 88 388 78 HOH HOH . 
H 3 HOH A 89 389 143 HOH HOH . 
H 3 HOH A 90 390 118 HOH HOH . 
H 3 HOH A 91 391 54 HOH HOH . 
H 3 HOH A 92 392 107 HOH HOH . 
H 3 HOH A 93 393 201 HOH HOH . 
H 3 HOH A 94 394 187 HOH HOH . 
H 3 HOH A 95 395 267 HOH HOH . 
H 3 HOH A 96 396 193 HOH HOH . 
H 3 HOH A 97 397 132 HOH HOH . 
H 3 HOH A 98 398 123 HOH HOH . 
H 3 HOH A 99 399 230 HOH HOH . 
H 3 HOH A 100 400 202 HOH HOH . 
H 3 HOH A 101 401 248 HOH HOH . 
H 3 HOH A 102 402 178 HOH HOH . 
H 3 HOH A 103 403 50 HOH HOH . 
H 3 HOH A 104 404 109 HOH HOH . 
H 3 HOH A 105 405 174 HOH HOH . 
H 3 HOH A 106 406 20 HOH HOH . 
H 3 HOH A 107 407 209 HOH HOH . 
H 3 HOH A 108 408 79 HOH HOH . 
H 3 HOH A 109 409 172 HOH HOH . 
H 3 HOH A 110 410 164 HOH HOH . 
H 3 HOH A 111 411 301 HOH HOH . 
H 3 HOH A 112 412 241 HOH HOH . 
H 3 HOH A 113 413 140 HOH HOH . 
H 3 HOH A 114 414 197 HOH HOH . 
H 3 HOH A 115 415 265 HOH HOH . 
H 3 HOH A 116 416 179 HOH HOH . 
H 3 HOH A 117 417 229 HOH HOH . 
H 3 HOH A 118 418 83 HOH HOH . 
H 3 HOH A 119 419 231 HOH HOH . 
H 3 HOH A 120 420 284 HOH HOH . 
H 3 HOH A 121 421 182 HOH HOH . 
H 3 HOH A 122 422 217 HOH HOH . 
H 3 HOH A 123 423 226 HOH HOH . 
H 3 HOH A 124 424 285 HOH HOH . 
H 3 HOH A 125 425 196 HOH HOH . 
H 3 HOH A 126 426 184 HOH HOH . 
H 3 HOH A 127 427 100 HOH HOH . 
H 3 HOH A 128 428 287 HOH HOH . 
H 3 HOH A 129 429 244 HOH HOH . 
H 3 HOH A 130 430 138 HOH HOH . 
H 3 HOH A 131 431 99 HOH HOH . 
H 3 HOH A 132 432 295 HOH HOH . 
H 3 HOH A 133 433 199 HOH HOH . 
H 3 HOH A 134 434 141 HOH HOH . 
H 3 HOH A 135 435 288 HOH HOH . 
H 3 HOH A 136 436 286 HOH HOH . 
H 3 HOH A 137 437 221 HOH HOH . 
H 3 HOH A 138 438 218 HOH HOH . 
H 3 HOH A 139 439 162 HOH HOH . 
H 3 HOH A 140 440 219 HOH HOH . 
I 3 HOH B 1 301 277 HOH HOH . 
I 3 HOH B 2 302 256 HOH HOH . 
I 3 HOH B 3 303 155 HOH HOH . 
I 3 HOH B 4 304 148 HOH HOH . 
I 3 HOH B 5 305 307 HOH HOH . 
I 3 HOH B 6 306 211 HOH HOH . 
I 3 HOH B 7 307 304 HOH HOH . 
I 3 HOH B 8 308 308 HOH HOH . 
I 3 HOH B 9 309 205 HOH HOH . 
I 3 HOH B 10 310 235 HOH HOH . 
I 3 HOH B 11 311 95 HOH HOH . 
I 3 HOH B 12 312 112 HOH HOH . 
I 3 HOH B 13 313 213 HOH HOH . 
I 3 HOH B 14 314 133 HOH HOH . 
I 3 HOH B 15 315 40 HOH HOH . 
I 3 HOH B 16 316 65 HOH HOH . 
I 3 HOH B 17 317 24 HOH HOH . 
I 3 HOH B 18 318 4 HOH HOH . 
I 3 HOH B 19 319 242 HOH HOH . 
I 3 HOH B 20 320 47 HOH HOH . 
I 3 HOH B 21 321 6 HOH HOH . 
I 3 HOH B 22 322 31 HOH HOH . 
I 3 HOH B 23 323 96 HOH HOH . 
I 3 HOH B 24 324 157 HOH HOH . 
I 3 HOH B 25 325 43 HOH HOH . 
I 3 HOH B 26 326 268 HOH HOH . 
I 3 HOH B 27 327 228 HOH HOH . 
I 3 HOH B 28 328 9 HOH HOH . 
I 3 HOH B 29 329 80 HOH HOH . 
I 3 HOH B 30 330 67 HOH HOH . 
I 3 HOH B 31 331 48 HOH HOH . 
I 3 HOH B 32 332 204 HOH HOH . 
I 3 HOH B 33 333 233 HOH HOH . 
I 3 HOH B 34 334 53 HOH HOH . 
I 3 HOH B 35 335 14 HOH HOH . 
I 3 HOH B 36 336 34 HOH HOH . 
I 3 HOH B 37 337 45 HOH HOH . 
I 3 HOH B 38 338 70 HOH HOH . 
I 3 HOH B 39 339 144 HOH HOH . 
I 3 HOH B 40 340 85 HOH HOH . 
I 3 HOH B 41 341 18 HOH HOH . 
I 3 HOH B 42 342 13 HOH HOH . 
I 3 HOH B 43 343 73 HOH HOH . 
I 3 HOH B 44 344 1 HOH HOH . 
I 3 HOH B 45 345 249 HOH HOH . 
I 3 HOH B 46 346 303 HOH HOH . 
I 3 HOH B 47 347 89 HOH HOH . 
I 3 HOH B 48 348 36 HOH HOH . 
I 3 HOH B 49 349 51 HOH HOH . 
I 3 HOH B 50 350 59 HOH HOH . 
I 3 HOH B 51 351 44 HOH HOH . 
I 3 HOH B 52 352 21 HOH HOH . 
I 3 HOH B 53 353 153 HOH HOH . 
I 3 HOH B 54 354 117 HOH HOH . 
I 3 HOH B 55 355 214 HOH HOH . 
I 3 HOH B 56 356 165 HOH HOH . 
I 3 HOH B 57 357 39 HOH HOH . 
I 3 HOH B 58 358 139 HOH HOH . 
I 3 HOH B 59 359 63 HOH HOH . 
I 3 HOH B 60 360 61 HOH HOH . 
I 3 HOH B 61 361 35 HOH HOH . 
I 3 HOH B 62 362 163 HOH HOH . 
I 3 HOH B 63 363 149 HOH HOH . 
I 3 HOH B 64 364 302 HOH HOH . 
I 3 HOH B 65 365 10 HOH HOH . 
I 3 HOH B 66 366 76 HOH HOH . 
I 3 HOH B 67 367 170 HOH HOH . 
I 3 HOH B 68 368 120 HOH HOH . 
I 3 HOH B 69 369 311 HOH HOH . 
I 3 HOH B 70 370 28 HOH HOH . 
I 3 HOH B 71 371 60 HOH HOH . 
I 3 HOH B 72 372 25 HOH HOH . 
I 3 HOH B 73 373 93 HOH HOH . 
I 3 HOH B 74 374 266 HOH HOH . 
I 3 HOH B 75 375 131 HOH HOH . 
I 3 HOH B 76 376 212 HOH HOH . 
I 3 HOH B 77 377 101 HOH HOH . 
I 3 HOH B 78 378 151 HOH HOH . 
I 3 HOH B 79 379 154 HOH HOH . 
I 3 HOH B 80 380 168 HOH HOH . 
I 3 HOH B 81 381 75 HOH HOH . 
I 3 HOH B 82 382 105 HOH HOH . 
I 3 HOH B 83 383 56 HOH HOH . 
I 3 HOH B 84 384 246 HOH HOH . 
I 3 HOH B 85 385 136 HOH HOH . 
I 3 HOH B 86 386 130 HOH HOH . 
I 3 HOH B 87 387 129 HOH HOH . 
I 3 HOH B 88 388 147 HOH HOH . 
I 3 HOH B 89 389 225 HOH HOH . 
I 3 HOH B 90 390 58 HOH HOH . 
I 3 HOH B 91 391 198 HOH HOH . 
I 3 HOH B 92 392 310 HOH HOH . 
I 3 HOH B 93 393 150 HOH HOH . 
I 3 HOH B 94 394 166 HOH HOH . 
I 3 HOH B 95 395 236 HOH HOH . 
I 3 HOH B 96 396 276 HOH HOH . 
I 3 HOH B 97 397 128 HOH HOH . 
I 3 HOH B 98 398 142 HOH HOH . 
I 3 HOH B 99 399 313 HOH HOH . 
I 3 HOH B 100 400 126 HOH HOH . 
I 3 HOH B 101 401 234 HOH HOH . 
I 3 HOH B 102 402 309 HOH HOH . 
I 3 HOH B 103 403 169 HOH HOH . 
I 3 HOH B 104 404 254 HOH HOH . 
I 3 HOH B 105 405 306 HOH HOH . 
I 3 HOH B 106 406 192 HOH HOH . 
I 3 HOH B 107 407 203 HOH HOH . 
I 3 HOH B 108 408 255 HOH HOH . 
I 3 HOH B 109 409 88 HOH HOH . 
I 3 HOH B 110 410 224 HOH HOH . 
I 3 HOH B 111 411 15 HOH HOH . 
I 3 HOH B 112 412 222 HOH HOH . 
I 3 HOH B 113 413 259 HOH HOH . 
I 3 HOH B 114 414 278 HOH HOH . 
I 3 HOH B 115 415 279 HOH HOH . 
I 3 HOH B 116 416 237 HOH HOH . 
I 3 HOH B 117 417 291 HOH HOH . 
I 3 HOH B 118 418 283 HOH HOH . 
I 3 HOH B 119 419 208 HOH HOH . 
I 3 HOH B 120 420 113 HOH HOH . 
I 3 HOH B 121 421 293 HOH HOH . 
I 3 HOH B 122 422 94 HOH HOH . 
I 3 HOH B 123 423 220 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 2 23.746 -0.999 12.283 1 20.11 ? C1 GOL 202 B 1 
HETATM 2 O O1 GOL . . . G 2 22.576 -0.766 11.475 1 51.42 ? O1 GOL 202 B 1 
HETATM 3 C C2 GOL . . . G 2 23.892 -0.082 13.488 1 39.32 ? C2 GOL 202 B 1 
HETATM 4 O O2 GOL . . . G 2 24.289 -1.183 14.258 1 41.46 ? O2 GOL 202 B 1 
HETATM 5 C C3 GOL . . . G 2 24.833 1.156 13.424 1 40.96 ? C3 GOL 202 B 1 
HETATM 6 O O3 GOL . . . G 2 25.767 1.362 14.507 1 33.28 ? O3 GOL 202 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#