data_5J11 # _model_server_result.job_id M4qa2oEb2Z2O6h3mK4SLWw _model_server_result.datetime_utc '2024-11-22 10:34:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j11 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 5J11 # _exptl.entry_id 5J11 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.2 _cell.angle_gamma 90 _cell.entry_id 5J11 _cell.length_a 135.783 _cell.length_b 66.644 _cell.length_c 91.971 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J11 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 27 A CYS 34 1_555 A SG CYS 103 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 62 A CYS 69 1_555 A SG CYS 68 A CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf3 A SG CYS 83 A CYS 90 1_555 A SG CYS 125 A CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 B SG CYS 43 B CYS 42 1_555 B SG CYS 58 B CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf5 B SG CYS 75 B CYS 74 1_555 B SG CYS 83 B CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf6 B SG CYS 109 B CYS 108 1_555 B SG CYS 119 B CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf7 C SG CYS 71 C CYS 71 1_555 C SG CYS 84 C CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf8 C SG CYS 138 C CYS 138 1_555 C SG CYS 168 C CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf9 C SG CYS 180 C CYS 180 1_555 C SG CYS 218 C CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? covale ? covale1 C ND2 ASN 55 C ASN 55 1_555 E C1 NAG . C NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale2 C ND2 ASN 169 C ASN 169 1_555 F C1 NAG . C NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 267 n n C1 C2 PGE sing 268 n n C1 H1 PGE sing 269 n n C1 H12 PGE sing 270 n n O1 HO1 PGE sing 271 n n C2 O2 PGE sing 272 n n C2 H2 PGE sing 273 n n C2 H22 PGE sing 274 n n O2 C3 PGE sing 275 n n C3 C4 PGE sing 276 n n C3 H3 PGE sing 277 n n C3 H32 PGE sing 278 n n C4 O3 PGE sing 279 n n C4 H4 PGE sing 280 n n C4 H42 PGE sing 281 n n O4 C6 PGE sing 282 n n O4 HO4 PGE sing 283 n n C6 C5 PGE sing 284 n n C6 H6 PGE sing 285 n n C6 H62 PGE sing 286 n n C5 O3 PGE sing 287 n n C5 H5 PGE sing 288 n n C5 H52 PGE sing 289 n n # _atom_sites.entry_id 5J11 _atom_sites.fract_transf_matrix[1][1] 0.007365 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002565 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015005 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011513 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 PGE C 1 301 240 PGE PGE . E 5 NAG C 1 302 500 NAG NAG . F 5 NAG C 1 303 501 NAG NAG . G 6 HOH A 1 201 20 HOH HOH . G 6 HOH A 2 202 14 HOH HOH . G 6 HOH A 3 203 26 HOH HOH . G 6 HOH A 4 204 17 HOH HOH . G 6 HOH A 5 205 10 HOH HOH . G 6 HOH A 6 206 13 HOH HOH . G 6 HOH A 7 207 7 HOH HOH . G 6 HOH A 8 208 3 HOH HOH . H 6 HOH B 1 301 15 HOH HOH . H 6 HOH B 2 302 6 HOH HOH . H 6 HOH B 3 303 29 HOH HOH . H 6 HOH B 4 304 11 HOH HOH . H 6 HOH B 5 305 9 HOH HOH . I 6 HOH C 1 401 25 HOH HOH . I 6 HOH C 2 402 28 HOH HOH . I 6 HOH C 3 403 18 HOH HOH . I 6 HOH C 4 404 2 HOH HOH . I 6 HOH C 5 405 1 HOH HOH . I 6 HOH C 6 406 12 HOH HOH . I 6 HOH C 7 407 23 HOH HOH . I 6 HOH C 8 408 16 HOH HOH . I 6 HOH C 9 409 4 HOH HOH . I 6 HOH C 10 410 19 HOH HOH . I 6 HOH C 11 411 21 HOH HOH . I 6 HOH C 12 412 5 HOH HOH . I 6 HOH C 13 413 24 HOH HOH . I 6 HOH C 14 414 22 HOH HOH . I 6 HOH C 15 415 8 HOH HOH . I 6 HOH C 16 416 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . D 4 260.195 29.649 48.892 1 90.34 ? C1 PGE 301 C 1 HETATM 2 O O1 PGE . . . D 4 260.182 28.403 49.602 1 86.99 ? O1 PGE 301 C 1 HETATM 3 C C2 PGE . . . D 4 261.38 29.79 47.949 1 91.8 ? C2 PGE 301 C 1 HETATM 4 O O2 PGE . . . D 4 261.013 30.521 46.779 1 93.92 ? O2 PGE 301 C 1 HETATM 5 C C3 PGE . . . D 4 260.837 31.918 46.99 1 96.96 ? C3 PGE 301 C 1 HETATM 6 C C4 PGE . . . D 4 260.635 32.657 45.699 1 98.14 ? C4 PGE 301 C 1 HETATM 7 O O4 PGE . . . D 4 257.313 32.41 44.614 1 94.52 ? O4 PGE 301 C 1 HETATM 8 C C6 PGE . . . D 4 257.676 33.364 45.627 1 97.41 ? C6 PGE 301 C 1 HETATM 9 C C5 PGE . . . D 4 258.857 34.213 45.197 1 98.85 ? C5 PGE 301 C 1 HETATM 10 O O3 PGE . . . D 4 260.025 33.918 45.97 1 98.66 ? O3 PGE 301 C 1 HETATM 11 H H1 PGE . . . D 4 259.25 29.815 48.378 1 90.6 ? H1 PGE 301 C 1 HETATM 12 H H12 PGE . . . D 4 260.248 30.394 49.686 1 90.46 ? H12 PGE 301 C 1 HETATM 13 H HO1 PGE . . . D 4 259.248 28.063 49.613 1 86.62 ? HO1 PGE 301 C 1 HETATM 14 H H2 PGE . . . D 4 262.209 30.278 48.46 1 91.86 ? H2 PGE 301 C 1 HETATM 15 H H22 PGE . . . D 4 261.755 28.809 47.662 1 91.97 ? H22 PGE 301 C 1 HETATM 16 H H3 PGE . . . D 4 260 32.114 47.659 1 97.34 ? H3 PGE 301 C 1 HETATM 17 H H32 PGE . . . D 4 261.724 32.313 47.479 1 97.24 ? H32 PGE 301 C 1 HETATM 18 H H4 PGE . . . D 4 261.599 32.807 45.216 1 98.34 ? H4 PGE 301 C 1 HETATM 19 H H42 PGE . . . D 4 260.049 32.055 45.006 1 98.36 ? H42 PGE 301 C 1 HETATM 20 H HO4 PGE . . . D 4 256.487 32.736 44.17 1 94.66 ? HO4 PGE 301 C 1 HETATM 21 H H6 PGE . . . D 4 257.916 32.758 46.5 1 96.99 ? H6 PGE 301 C 1 HETATM 22 H H62 PGE . . . D 4 256.824 33.981 45.909 1 97.47 ? H62 PGE 301 C 1 HETATM 23 H H5 PGE . . . D 4 258.602 35.268 45.293 1 98.67 ? H5 PGE 301 C 1 HETATM 24 H H52 PGE . . . D 4 259.053 34.059 44.137 1 98.88 ? H52 PGE 301 C 1 # _model_server_stats.io_time_ms 206 _model_server_stats.parse_time_ms 199 _model_server_stats.create_model_time_ms 128 _model_server_stats.query_time_ms 456 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #