data_5J11
#
_model_server_result.job_id            5CMRNSlcIp9jgqbaG5Vavw 
_model_server_result.datetime_utc      '2024-11-22 10:14:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5j11 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":303}' 
#
_entry.id    5J11 
#
_exptl.entry_id    5J11 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.2 
_cell.angle_gamma         90 
_cell.entry_id            5J11 
_cell.length_a            135.783 
_cell.length_b            66.644 
_cell.length_c            91.971 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5J11 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 27 A CYS 34 1_555 A SG CYS 103 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf2 A SG CYS 62 A CYS 69 1_555 A SG CYS 68 A CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf3 A SG CYS 83 A CYS 90 1_555 A SG CYS 125 A CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 B SG CYS 43 B CYS 42 1_555 B SG CYS 58 B CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf5 B SG CYS 75 B CYS 74 1_555 B SG CYS 83 B CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf6 B SG CYS 109 B CYS 108 1_555 B SG CYS 119 B CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf7 C SG CYS 71 C CYS 71 1_555 C SG CYS 84 C CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf8 C SG CYS 138 C CYS 138 1_555 C SG CYS 168 C CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf9 C SG CYS 180 C CYS 180 1_555 C SG CYS 218 C CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
covale ? covale1 C ND2 ASN 55 C ASN 55 1_555 E C1 NAG . C NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale2 C ND2 ASN 169 C ASN 169 1_555 F C1 NAG . C NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5J11 
_atom_sites.fract_transf_matrix[1][1]    0.007365 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002565 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015005 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011513 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 PGE C 1 301 240 PGE PGE . 
E 5 NAG C 1 302 500 NAG NAG . 
F 5 NAG C 1 303 501 NAG NAG . 
G 6 HOH A 1 201 20 HOH HOH . 
G 6 HOH A 2 202 14 HOH HOH . 
G 6 HOH A 3 203 26 HOH HOH . 
G 6 HOH A 4 204 17 HOH HOH . 
G 6 HOH A 5 205 10 HOH HOH . 
G 6 HOH A 6 206 13 HOH HOH . 
G 6 HOH A 7 207 7 HOH HOH . 
G 6 HOH A 8 208 3 HOH HOH . 
H 6 HOH B 1 301 15 HOH HOH . 
H 6 HOH B 2 302 6 HOH HOH . 
H 6 HOH B 3 303 29 HOH HOH . 
H 6 HOH B 4 304 11 HOH HOH . 
H 6 HOH B 5 305 9 HOH HOH . 
I 6 HOH C 1 401 25 HOH HOH . 
I 6 HOH C 2 402 28 HOH HOH . 
I 6 HOH C 3 403 18 HOH HOH . 
I 6 HOH C 4 404 2 HOH HOH . 
I 6 HOH C 5 405 1 HOH HOH . 
I 6 HOH C 6 406 12 HOH HOH . 
I 6 HOH C 7 407 23 HOH HOH . 
I 6 HOH C 8 408 16 HOH HOH . 
I 6 HOH C 9 409 4 HOH HOH . 
I 6 HOH C 10 410 19 HOH HOH . 
I 6 HOH C 11 411 21 HOH HOH . 
I 6 HOH C 12 412 5 HOH HOH . 
I 6 HOH C 13 413 24 HOH HOH . 
I 6 HOH C 14 414 22 HOH HOH . 
I 6 HOH C 15 415 8 HOH HOH . 
I 6 HOH C 16 416 27 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . F 5 265.067 66.481 36.559 1 135.88 ? C1 NAG 303 C 1 
HETATM 2 C C2 NAG . . . F 5 264.389 67.039 37.809 1 141.25 ? C2 NAG 303 C 1 
HETATM 3 C C3 NAG . . . F 5 264.389 68.561 37.645 1 149.44 ? C3 NAG 303 C 1 
HETATM 4 C C4 NAG . . . F 5 265.815 69.102 37.524 1 151.84 ? C4 NAG 303 C 1 
HETATM 5 C C5 NAG . . . F 5 266.655 68.296 36.528 1 147.66 ? C5 NAG 303 C 1 
HETATM 6 C C6 NAG . . . F 5 268.15 68.521 36.681 1 150.45 ? C6 NAG 303 C 1 
HETATM 7 C C7 NAG . . . F 5 262.61 65.782 38.973 1 134.07 ? C7 NAG 303 C 1 
HETATM 8 C C8 NAG . . . F 5 261.127 65.566 39.066 1 134.5 ? C8 NAG 303 C 1 
HETATM 9 N N2 NAG . . . F 5 263.029 66.539 37.944 1 136.75 ? N2 NAG 303 C 1 
HETATM 10 O O3 NAG . . . F 5 263.752 69.161 38.773 1 153.87 ? O3 NAG 303 C 1 
HETATM 11 O O4 NAG . . . F 5 265.767 70.458 37.081 1 153.75 ? O4 NAG 303 C 1 
HETATM 12 O O5 NAG . . . F 5 266.43 66.881 36.683 1 140.64 ? O5 NAG 303 C 1 
HETATM 13 O O6 NAG . . . F 5 268.843 67.355 37.124 1 148.16 ? O6 NAG 303 C 1 
HETATM 14 O O7 NAG . . . F 5 263.389 65.311 39.8 1 131.53 ? O7 NAG 303 C 1 
HETATM 15 H H2 NAG . . . F 5 264.991 66.796 38.684 1 142.22 ? H2 NAG 303 C 1 
HETATM 16 H H3 NAG . . . F 5 263.834 68.84 36.751 1 148.83 ? H3 NAG 303 C 1 
HETATM 17 H H4 NAG . . . F 5 266.276 69.051 38.51 1 153.97 ? H4 NAG 303 C 1 
HETATM 18 H H5 NAG . . . F 5 266.387 68.588 35.513 1 146.93 ? H5 NAG 303 C 1 
HETATM 19 H H61 NAG . . . F 5 268.356 69.242 37.471 1 154.43 ? H61 NAG 303 C 1 
HETATM 20 H H62 NAG . . . F 5 268.589 68.913 35.765 1 150.52 ? H62 NAG 303 C 1 
HETATM 21 H H81 NAG . . . F 5 260.844 64.517 39.148 1 132.27 ? H81 NAG 303 C 1 
HETATM 22 H H82 NAG . . . F 5 260.599 65.954 38.197 1 134 ? H82 NAG 303 C 1 
HETATM 23 H H83 NAG . . . F 5 260.705 66.078 39.93 1 138.53 ? H83 NAG 303 C 1 
HETATM 24 H HN2 NAG . . . F 5 262.391 66.801 37.199 1 136.16 ? HN2 NAG 303 C 1 
HETATM 25 H HO3 NAG . . . F 5 263.148 69.862 38.413 1 155.56 ? HO3 NAG 303 C 1 
HETATM 26 H HO4 NAG . . . F 5 265.154 70.942 37.694 1 156.52 ? HO4 NAG 303 C 1 
HETATM 27 H HO6 NAG . . . F 5 268.395 67.022 37.945 1 148.38 ? HO6 NAG 303 C 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           373 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           27 
#