data_5J1K # _model_server_result.job_id wW1hWiL6MbEib2kzWS3Vfw _model_server_result.datetime_utc '2024-11-01 02:29:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j1k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5J1K # _exptl.entry_id 5J1K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5J1K _cell.length_a 140.772 _cell.length_b 140.772 _cell.length_c 40.244 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J1K _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 9_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -13.414667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 5J1K _atom_sites.fract_transf_matrix[1][1] 0.007104 _atom_sites.fract_transf_matrix[1][2] 0.004101 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008203 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024848 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 1 GOL GOL . C 2 GOL A 1 402 2 GOL GOL . D 3 HOH A 1 501 59 HOH HOH . D 3 HOH A 2 502 34 HOH HOH . D 3 HOH A 3 503 82 HOH HOH . D 3 HOH A 4 504 61 HOH HOH . D 3 HOH A 5 505 39 HOH HOH . D 3 HOH A 6 506 88 HOH HOH . D 3 HOH A 7 507 35 HOH HOH . D 3 HOH A 8 508 84 HOH HOH . D 3 HOH A 9 509 43 HOH HOH . D 3 HOH A 10 510 38 HOH HOH . D 3 HOH A 11 511 51 HOH HOH . D 3 HOH A 12 512 41 HOH HOH . D 3 HOH A 13 513 33 HOH HOH . D 3 HOH A 14 514 68 HOH HOH . D 3 HOH A 15 515 23 HOH HOH . D 3 HOH A 16 516 94 HOH HOH . D 3 HOH A 17 517 73 HOH HOH . D 3 HOH A 18 518 3 HOH HOH . D 3 HOH A 19 519 15 HOH HOH . D 3 HOH A 20 520 71 HOH HOH . D 3 HOH A 21 521 80 HOH HOH . D 3 HOH A 22 522 1 HOH HOH . D 3 HOH A 23 523 72 HOH HOH . D 3 HOH A 24 524 22 HOH HOH . D 3 HOH A 25 525 29 HOH HOH . D 3 HOH A 26 526 21 HOH HOH . D 3 HOH A 27 527 14 HOH HOH . D 3 HOH A 28 528 25 HOH HOH . D 3 HOH A 29 529 50 HOH HOH . D 3 HOH A 30 530 69 HOH HOH . D 3 HOH A 31 531 58 HOH HOH . D 3 HOH A 32 532 9 HOH HOH . D 3 HOH A 33 533 18 HOH HOH . D 3 HOH A 34 534 19 HOH HOH . D 3 HOH A 35 535 48 HOH HOH . D 3 HOH A 36 536 17 HOH HOH . D 3 HOH A 37 537 99 HOH HOH . D 3 HOH A 38 538 47 HOH HOH . D 3 HOH A 39 539 4 HOH HOH . D 3 HOH A 40 540 5 HOH HOH . D 3 HOH A 41 541 86 HOH HOH . D 3 HOH A 42 542 28 HOH HOH . D 3 HOH A 43 543 8 HOH HOH . D 3 HOH A 44 544 13 HOH HOH . D 3 HOH A 45 545 16 HOH HOH . D 3 HOH A 46 546 60 HOH HOH . D 3 HOH A 47 547 85 HOH HOH . D 3 HOH A 48 548 75 HOH HOH . D 3 HOH A 49 549 27 HOH HOH . D 3 HOH A 50 550 11 HOH HOH . D 3 HOH A 51 551 49 HOH HOH . D 3 HOH A 52 552 95 HOH HOH . D 3 HOH A 53 553 57 HOH HOH . D 3 HOH A 54 554 87 HOH HOH . D 3 HOH A 55 555 65 HOH HOH . D 3 HOH A 56 556 10 HOH HOH . D 3 HOH A 57 557 63 HOH HOH . D 3 HOH A 58 558 24 HOH HOH . D 3 HOH A 59 559 30 HOH HOH . D 3 HOH A 60 560 91 HOH HOH . D 3 HOH A 61 561 26 HOH HOH . D 3 HOH A 62 562 6 HOH HOH . D 3 HOH A 63 563 89 HOH HOH . D 3 HOH A 64 564 2 HOH HOH . D 3 HOH A 65 565 64 HOH HOH . D 3 HOH A 66 566 93 HOH HOH . D 3 HOH A 67 567 46 HOH HOH . D 3 HOH A 68 568 31 HOH HOH . D 3 HOH A 69 569 42 HOH HOH . D 3 HOH A 70 570 92 HOH HOH . D 3 HOH A 71 571 74 HOH HOH . D 3 HOH A 72 572 12 HOH HOH . D 3 HOH A 73 573 40 HOH HOH . D 3 HOH A 74 574 37 HOH HOH . D 3 HOH A 75 575 53 HOH HOH . D 3 HOH A 76 576 96 HOH HOH . D 3 HOH A 77 577 76 HOH HOH . D 3 HOH A 78 578 77 HOH HOH . D 3 HOH A 79 579 56 HOH HOH . D 3 HOH A 80 580 67 HOH HOH . D 3 HOH A 81 581 52 HOH HOH . D 3 HOH A 82 582 55 HOH HOH . D 3 HOH A 83 583 45 HOH HOH . D 3 HOH A 84 584 90 HOH HOH . D 3 HOH A 85 585 32 HOH HOH . D 3 HOH A 86 586 83 HOH HOH . D 3 HOH A 87 587 79 HOH HOH . D 3 HOH A 88 588 98 HOH HOH . D 3 HOH A 89 589 70 HOH HOH . D 3 HOH A 90 590 81 HOH HOH . D 3 HOH A 91 591 44 HOH HOH . D 3 HOH A 92 592 78 HOH HOH . D 3 HOH A 93 593 97 HOH HOH . D 3 HOH A 94 594 62 HOH HOH . D 3 HOH A 95 595 36 HOH HOH . D 3 HOH A 96 596 20 HOH HOH . D 3 HOH A 97 597 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 -37.779 52.627 9.037 1 41.87 ? C1 GOL 402 A 1 HETATM 2 O O1 GOL . . . C 2 -38.745 51.719 9.553 1 38.37 ? O1 GOL 402 A 1 HETATM 3 C C2 GOL . . . C 2 -36.576 52.702 9.949 1 45.4 ? C2 GOL 402 A 1 HETATM 4 O O2 GOL . . . C 2 -37.045 52.76 11.309 1 44.8 ? O2 GOL 402 A 1 HETATM 5 C C3 GOL . . . C 2 -35.622 51.52 9.719 1 46.71 ? C3 GOL 402 A 1 HETATM 6 O O3 GOL . . . C 2 -34.362 51.931 9.171 1 52.29 ? O3 GOL 402 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #