data_5J1V
#
_model_server_result.job_id            6tbbT4v5qBE1Tj5WQcssSA 
_model_server_result.datetime_utc      '2024-10-13 03:20:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5j1v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":501}' 
#
_entry.id    5J1V 
#
_exptl.entry_id    5J1V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              211.223 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            pyrido[3,4-g]quinazoline-2,10-diamine 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.28 
_cell.angle_gamma         90 
_cell.entry_id            5J1V 
_cell.length_a            56.471 
_cell.length_b            116.021 
_cell.length_c            90.108 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5J1V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,I 1 1 
B,F,J 2 1 
C,G,H,K 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 F N N 
? 2 G N N 
#
_chem_comp.formula           'C11 H9 N5' 
_chem_comp.formula_weight    211.223 
_chem_comp.id                6FD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              pyrido[3,4-g]quinazoline-2,10-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C 6FD doub 1 n y 
C1 N 6FD sing 2 n y 
C C10 6FD sing 3 n y 
N4 C9 6FD sing 4 n n 
N C2 6FD doub 5 n y 
C10 C9 6FD doub 6 n y 
C10 C3 6FD sing 7 n y 
C9 C8 6FD sing 8 n y 
C2 C3 6FD sing 9 n y 
C3 C4 6FD doub 10 n y 
C8 N3 6FD sing 11 n y 
C8 C5 6FD doub 12 n y 
N3 C7 6FD doub 13 n y 
C4 C5 6FD sing 14 n y 
C5 C6 6FD sing 15 n y 
C7 N2 6FD sing 16 n n 
C7 N1 6FD sing 17 n y 
C6 N1 6FD doub 18 n y 
C4 H1 6FD sing 19 n n 
C6 H2 6FD sing 20 n n 
N2 H3 6FD sing 21 n n 
N2 H4 6FD sing 22 n n 
N4 H5 6FD sing 23 n n 
N4 H6 6FD sing 24 n n 
C H7 6FD sing 25 n n 
C2 H8 6FD sing 26 n n 
C1 H9 6FD sing 27 n n 
#
_atom_sites.entry_id                     5J1V 
_atom_sites.fract_transf_matrix[1][1]    0.017708 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002894 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008619 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011245 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 6FD A 1 501 1 6FD XXX . 
E 3 GOL A 1 502 1 GOL GOL . 
F 2 6FD B 1 501 2 6FD XXX . 
G 2 6FD C 1 501 3 6FD XXX . 
H 3 GOL C 1 502 2 GOL GOL . 
I 4 HOH A 1 601 70 HOH HOH . 
I 4 HOH A 2 602 85 HOH HOH . 
I 4 HOH A 3 603 30 HOH HOH . 
I 4 HOH A 4 604 80 HOH HOH . 
I 4 HOH A 5 605 62 HOH HOH . 
I 4 HOH A 6 606 15 HOH HOH . 
I 4 HOH A 7 607 88 HOH HOH . 
I 4 HOH A 8 608 97 HOH HOH . 
I 4 HOH A 9 609 84 HOH HOH . 
I 4 HOH A 10 610 59 HOH HOH . 
I 4 HOH A 11 611 86 HOH HOH . 
I 4 HOH A 12 612 58 HOH HOH . 
I 4 HOH A 13 613 83 HOH HOH . 
I 4 HOH A 14 614 38 HOH HOH . 
I 4 HOH A 15 615 56 HOH HOH . 
I 4 HOH A 16 616 93 HOH HOH . 
I 4 HOH A 17 617 77 HOH HOH . 
I 4 HOH A 18 618 91 HOH HOH . 
I 4 HOH A 19 619 31 HOH HOH . 
I 4 HOH A 20 620 94 HOH HOH . 
I 4 HOH A 21 621 57 HOH HOH . 
I 4 HOH A 22 622 132 HOH HOH . 
I 4 HOH A 23 623 79 HOH HOH . 
I 4 HOH A 24 624 43 HOH HOH . 
I 4 HOH A 25 625 89 HOH HOH . 
I 4 HOH A 26 626 73 HOH HOH . 
I 4 HOH A 27 627 60 HOH HOH . 
I 4 HOH A 28 628 61 HOH HOH . 
I 4 HOH A 29 629 87 HOH HOH . 
I 4 HOH A 30 630 51 HOH HOH . 
J 4 HOH B 1 601 63 HOH HOH . 
J 4 HOH B 2 602 45 HOH HOH . 
J 4 HOH B 3 603 48 HOH HOH . 
J 4 HOH B 4 604 110 HOH HOH . 
J 4 HOH B 5 605 111 HOH HOH . 
J 4 HOH B 6 606 64 HOH HOH . 
J 4 HOH B 7 607 42 HOH HOH . 
J 4 HOH B 8 608 27 HOH HOH . 
J 4 HOH B 9 609 40 HOH HOH . 
J 4 HOH B 10 610 19 HOH HOH . 
J 4 HOH B 11 611 101 HOH HOH . 
J 4 HOH B 12 612 112 HOH HOH . 
J 4 HOH B 13 613 20 HOH HOH . 
J 4 HOH B 14 614 18 HOH HOH . 
J 4 HOH B 15 615 17 HOH HOH . 
J 4 HOH B 16 616 113 HOH HOH . 
J 4 HOH B 17 617 103 HOH HOH . 
J 4 HOH B 18 618 109 HOH HOH . 
J 4 HOH B 19 619 100 HOH HOH . 
J 4 HOH B 20 620 3 HOH HOH . 
J 4 HOH B 21 621 1 HOH HOH . 
J 4 HOH B 22 622 98 HOH HOH . 
J 4 HOH B 23 623 108 HOH HOH . 
J 4 HOH B 24 624 52 HOH HOH . 
J 4 HOH B 25 625 114 HOH HOH . 
J 4 HOH B 26 626 4 HOH HOH . 
K 4 HOH C 1 601 129 HOH HOH . 
K 4 HOH C 2 602 7 HOH HOH . 
K 4 HOH C 3 603 69 HOH HOH . 
K 4 HOH C 4 604 28 HOH HOH . 
K 4 HOH C 5 605 117 HOH HOH . 
K 4 HOH C 6 606 126 HOH HOH . 
K 4 HOH C 7 607 25 HOH HOH . 
K 4 HOH C 8 608 8 HOH HOH . 
K 4 HOH C 9 609 125 HOH HOH . 
K 4 HOH C 10 610 33 HOH HOH . 
K 4 HOH C 11 611 32 HOH HOH . 
K 4 HOH C 12 612 16 HOH HOH . 
K 4 HOH C 13 613 131 HOH HOH . 
K 4 HOH C 14 614 68 HOH HOH . 
K 4 HOH C 15 615 67 HOH HOH . 
K 4 HOH C 16 616 26 HOH HOH . 
K 4 HOH C 17 617 44 HOH HOH . 
K 4 HOH C 18 618 135 HOH HOH . 
K 4 HOH C 19 619 14 HOH HOH . 
K 4 HOH C 20 620 66 HOH HOH . 
K 4 HOH C 21 621 118 HOH HOH . 
K 4 HOH C 22 622 81 HOH HOH . 
K 4 HOH C 23 623 124 HOH HOH . 
K 4 HOH C 24 624 46 HOH HOH . 
K 4 HOH C 25 625 133 HOH HOH . 
K 4 HOH C 26 626 12 HOH HOH . 
K 4 HOH C 27 627 121 HOH HOH . 
K 4 HOH C 28 628 5 HOH HOH . 
K 4 HOH C 29 629 122 HOH HOH . 
K 4 HOH C 30 630 49 HOH HOH . 
K 4 HOH C 31 631 115 HOH HOH . 
K 4 HOH C 32 632 22 HOH HOH . 
K 4 HOH C 33 633 128 HOH HOH . 
K 4 HOH C 34 634 54 HOH HOH . 
K 4 HOH C 35 635 11 HOH HOH . 
K 4 HOH C 36 636 116 HOH HOH . 
K 4 HOH C 37 637 134 HOH HOH . 
K 4 HOH C 38 638 127 HOH HOH . 
K 4 HOH C 39 639 65 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 6FD . . . G 2 1.352 -5.093 -54.446 1 30.13 ? C4 6FD 501 C 1 
HETATM 2 C C5 6FD . . . G 2 1.353 -5.144 -55.832 1 29.27 ? C5 6FD 501 C 1 
HETATM 3 C C6 6FD . . . G 2 1.225 -6.267 -56.681 1 32.25 ? C6 6FD 501 C 1 
HETATM 4 N N1 6FD . . . G 2 1.19 -6.221 -57.996 1 31.66 ? N1 6FD 501 C 1 
HETATM 5 C C7 6FD . . . G 2 1.287 -4.986 -58.546 1 30.44 ? C7 6FD 501 C 1 
HETATM 6 C C8 6FD . . . G 2 1.46 -3.922 -56.536 1 30.12 ? C8 6FD 501 C 1 
HETATM 7 N N2 6FD . . . G 2 1.164 -4.894 -59.872 1 35.4 ? N2 6FD 501 C 1 
HETATM 8 C C9 6FD . . . G 2 1.521 -2.683 -55.825 1 31.03 ? C9 6FD 501 C 1 
HETATM 9 C C10 6FD . . . G 2 1.45 -2.67 -54.437 1 30.18 ? C10 6FD 501 C 1 
HETATM 10 N N3 6FD . . . G 2 1.432 -3.854 -57.887 1 31.29 ? N3 6FD 501 C 1 
HETATM 11 N N4 6FD . . . G 2 1.618 -1.518 -56.482 1 28.99 ? N4 6FD 501 C 1 
HETATM 12 C C 6FD . . . G 2 1.473 -1.481 -53.678 1 32.06 ? C 6FD 501 C 1 
HETATM 13 C C3 6FD . . . G 2 1.422 -3.893 -53.736 1 28.09 ? C3 6FD 501 C 1 
HETATM 14 C C2 6FD . . . G 2 1.46 -3.83 -52.334 1 31.64 ? C2 6FD 501 C 1 
HETATM 15 N N 6FD . . . G 2 1.513 -2.7 -51.639 1 36.16 ? N 6FD 501 C 1 
HETATM 16 C C1 6FD . . . G 2 1.52 -1.555 -52.326 1 34.48 ? C1 6FD 501 C 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           34 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           16 
#