data_5J1V # _model_server_result.job_id n5EDskzxTokE0wE3IVnSmg _model_server_result.datetime_utc '2024-11-27 01:43:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j1v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":502}' # _entry.id 5J1V # _exptl.entry_id 5J1V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.28 _cell.angle_gamma 90 _cell.entry_id 5J1V _cell.length_a 56.471 _cell.length_b 116.021 _cell.length_c 90.108 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J1V _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,I 1 1 B,F,J 2 1 C,G,H,K 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 156 n n C1 C2 GOL sing 157 n n C1 H11 GOL sing 158 n n C1 H12 GOL sing 159 n n O1 HO1 GOL sing 160 n n C2 O2 GOL sing 161 n n C2 C3 GOL sing 162 n n C2 H2 GOL sing 163 n n O2 HO2 GOL sing 164 n n C3 O3 GOL sing 165 n n C3 H31 GOL sing 166 n n C3 H32 GOL sing 167 n n O3 HO3 GOL sing 168 n n # _atom_sites.entry_id 5J1V _atom_sites.fract_transf_matrix[1][1] 0.017708 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002894 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008619 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011245 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 6FD A 1 501 1 6FD XXX . E 3 GOL A 1 502 1 GOL GOL . F 2 6FD B 1 501 2 6FD XXX . G 2 6FD C 1 501 3 6FD XXX . H 3 GOL C 1 502 2 GOL GOL . I 4 HOH A 1 601 70 HOH HOH . I 4 HOH A 2 602 85 HOH HOH . I 4 HOH A 3 603 30 HOH HOH . I 4 HOH A 4 604 80 HOH HOH . I 4 HOH A 5 605 62 HOH HOH . I 4 HOH A 6 606 15 HOH HOH . I 4 HOH A 7 607 88 HOH HOH . I 4 HOH A 8 608 97 HOH HOH . I 4 HOH A 9 609 84 HOH HOH . I 4 HOH A 10 610 59 HOH HOH . I 4 HOH A 11 611 86 HOH HOH . I 4 HOH A 12 612 58 HOH HOH . I 4 HOH A 13 613 83 HOH HOH . I 4 HOH A 14 614 38 HOH HOH . I 4 HOH A 15 615 56 HOH HOH . I 4 HOH A 16 616 93 HOH HOH . I 4 HOH A 17 617 77 HOH HOH . I 4 HOH A 18 618 91 HOH HOH . I 4 HOH A 19 619 31 HOH HOH . I 4 HOH A 20 620 94 HOH HOH . I 4 HOH A 21 621 57 HOH HOH . I 4 HOH A 22 622 132 HOH HOH . I 4 HOH A 23 623 79 HOH HOH . I 4 HOH A 24 624 43 HOH HOH . I 4 HOH A 25 625 89 HOH HOH . I 4 HOH A 26 626 73 HOH HOH . I 4 HOH A 27 627 60 HOH HOH . I 4 HOH A 28 628 61 HOH HOH . I 4 HOH A 29 629 87 HOH HOH . I 4 HOH A 30 630 51 HOH HOH . J 4 HOH B 1 601 63 HOH HOH . J 4 HOH B 2 602 45 HOH HOH . J 4 HOH B 3 603 48 HOH HOH . J 4 HOH B 4 604 110 HOH HOH . J 4 HOH B 5 605 111 HOH HOH . J 4 HOH B 6 606 64 HOH HOH . J 4 HOH B 7 607 42 HOH HOH . J 4 HOH B 8 608 27 HOH HOH . J 4 HOH B 9 609 40 HOH HOH . J 4 HOH B 10 610 19 HOH HOH . J 4 HOH B 11 611 101 HOH HOH . J 4 HOH B 12 612 112 HOH HOH . J 4 HOH B 13 613 20 HOH HOH . J 4 HOH B 14 614 18 HOH HOH . J 4 HOH B 15 615 17 HOH HOH . J 4 HOH B 16 616 113 HOH HOH . J 4 HOH B 17 617 103 HOH HOH . J 4 HOH B 18 618 109 HOH HOH . J 4 HOH B 19 619 100 HOH HOH . J 4 HOH B 20 620 3 HOH HOH . J 4 HOH B 21 621 1 HOH HOH . J 4 HOH B 22 622 98 HOH HOH . J 4 HOH B 23 623 108 HOH HOH . J 4 HOH B 24 624 52 HOH HOH . J 4 HOH B 25 625 114 HOH HOH . J 4 HOH B 26 626 4 HOH HOH . K 4 HOH C 1 601 129 HOH HOH . K 4 HOH C 2 602 7 HOH HOH . K 4 HOH C 3 603 69 HOH HOH . K 4 HOH C 4 604 28 HOH HOH . K 4 HOH C 5 605 117 HOH HOH . K 4 HOH C 6 606 126 HOH HOH . K 4 HOH C 7 607 25 HOH HOH . K 4 HOH C 8 608 8 HOH HOH . K 4 HOH C 9 609 125 HOH HOH . K 4 HOH C 10 610 33 HOH HOH . K 4 HOH C 11 611 32 HOH HOH . K 4 HOH C 12 612 16 HOH HOH . K 4 HOH C 13 613 131 HOH HOH . K 4 HOH C 14 614 68 HOH HOH . K 4 HOH C 15 615 67 HOH HOH . K 4 HOH C 16 616 26 HOH HOH . K 4 HOH C 17 617 44 HOH HOH . K 4 HOH C 18 618 135 HOH HOH . K 4 HOH C 19 619 14 HOH HOH . K 4 HOH C 20 620 66 HOH HOH . K 4 HOH C 21 621 118 HOH HOH . K 4 HOH C 22 622 81 HOH HOH . K 4 HOH C 23 623 124 HOH HOH . K 4 HOH C 24 624 46 HOH HOH . K 4 HOH C 25 625 133 HOH HOH . K 4 HOH C 26 626 12 HOH HOH . K 4 HOH C 27 627 121 HOH HOH . K 4 HOH C 28 628 5 HOH HOH . K 4 HOH C 29 629 122 HOH HOH . K 4 HOH C 30 630 49 HOH HOH . K 4 HOH C 31 631 115 HOH HOH . K 4 HOH C 32 632 22 HOH HOH . K 4 HOH C 33 633 128 HOH HOH . K 4 HOH C 34 634 54 HOH HOH . K 4 HOH C 35 635 11 HOH HOH . K 4 HOH C 36 636 116 HOH HOH . K 4 HOH C 37 637 134 HOH HOH . K 4 HOH C 38 638 127 HOH HOH . K 4 HOH C 39 639 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 3 5.684 -20.403 -58.962 1 57.72 ? C1 GOL 502 C 1 HETATM 2 O O1 GOL . . . H 3 6.548 -21.017 -59.924 1 62.5 ? O1 GOL 502 C 1 HETATM 3 C C2 GOL . . . H 3 4.866 -21.443 -58.252 1 59.18 ? C2 GOL 502 C 1 HETATM 4 O O2 GOL . . . H 3 3.74 -20.741 -57.767 1 70.31 ? O2 GOL 502 C 1 HETATM 5 C C3 GOL . . . H 3 4.406 -22.546 -59.216 1 64.49 ? C3 GOL 502 C 1 HETATM 6 O O3 GOL . . . H 3 3.162 -23.18 -58.81 1 59.77 ? O3 GOL 502 C 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #