data_5J1W
#
_model_server_result.job_id            Pxr2Uouv4n_TffxZQJ5ebQ 
_model_server_result.datetime_utc      '2024-11-29 21:26:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5j1w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    5J1W 
#
_exptl.entry_id    5J1W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.55 
_cell.angle_gamma         90 
_cell.entry_id            5J1W 
_cell.length_a            56.63 
_cell.length_b            118.04 
_cell.length_c            90.5 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5J1W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,S 1 1 
B,J,K,L,T 2 1 
C,M,N,O,P,Q,R,U 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 J N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 154 n n 
C1 C2 GOL sing 155 n n 
C1 H11 GOL sing 156 n n 
C1 H12 GOL sing 157 n n 
O1 HO1 GOL sing 158 n n 
C2 O2 GOL sing 159 n n 
C2 C3 GOL sing 160 n n 
C2 H2 GOL sing 161 n n 
O2 HO2 GOL sing 162 n n 
C3 O3 GOL sing 163 n n 
C3 H31 GOL sing 164 n n 
C3 H32 GOL sing 165 n n 
O3 HO3 GOL sing 166 n n 
#
_atom_sites.entry_id                     5J1W 
_atom_sites.fract_transf_matrix[1][1]    0.017658 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002971 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008472 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011205 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 GOL A 1 501 1 GOL GOL . 
E 2 GOL A 1 502 2 GOL GOL . 
F 2 GOL A 1 503 3 GOL GOL . 
G 2 GOL A 1 504 4 GOL GOL . 
H 2 GOL A 1 505 5 GOL GOL . 
I 3 6FB A 1 506 1 6FB XXX . 
J 2 GOL B 1 501 8 GOL GOL . 
K 4 PO4 B 1 502 2 PO4 PO4 . 
L 3 6FB B 1 503 2 6FB XXX . 
M 2 GOL C 1 501 6 GOL GOL . 
N 2 GOL C 1 502 7 GOL GOL . 
O 2 GOL C 1 503 9 GOL GOL . 
P 4 PO4 C 1 504 1 PO4 PO4 . 
Q 3 6FB C 1 505 3 6FB XXX . 
R 3 6FB C 1 506 4 6FB XXX . 
S 5 HOH A 1 601 92 HOH HOH . 
S 5 HOH A 2 602 10 HOH HOH . 
S 5 HOH A 3 603 67 HOH HOH . 
S 5 HOH A 4 604 34 HOH HOH . 
S 5 HOH A 5 605 86 HOH HOH . 
S 5 HOH A 6 606 89 HOH HOH . 
S 5 HOH A 7 607 82 HOH HOH . 
S 5 HOH A 8 608 87 HOH HOH . 
S 5 HOH A 9 609 93 HOH HOH . 
S 5 HOH A 10 610 81 HOH HOH . 
S 5 HOH A 11 611 70 HOH HOH . 
S 5 HOH A 12 612 20 HOH HOH . 
S 5 HOH A 13 613 31 HOH HOH . 
S 5 HOH A 14 614 26 HOH HOH . 
S 5 HOH A 15 615 28 HOH HOH . 
S 5 HOH A 16 616 78 HOH HOH . 
S 5 HOH A 17 617 36 HOH HOH . 
S 5 HOH A 18 618 23 HOH HOH . 
S 5 HOH A 19 619 9 HOH HOH . 
S 5 HOH A 20 620 44 HOH HOH . 
S 5 HOH A 21 621 21 HOH HOH . 
S 5 HOH A 22 622 27 HOH HOH . 
S 5 HOH A 23 623 76 HOH HOH . 
S 5 HOH A 24 624 73 HOH HOH . 
S 5 HOH A 25 625 22 HOH HOH . 
S 5 HOH A 26 626 64 HOH HOH . 
S 5 HOH A 27 627 6 HOH HOH . 
S 5 HOH A 28 628 69 HOH HOH . 
S 5 HOH A 29 629 32 HOH HOH . 
S 5 HOH A 30 630 15 HOH HOH . 
S 5 HOH A 31 631 66 HOH HOH . 
S 5 HOH A 32 632 45 HOH HOH . 
S 5 HOH A 33 633 83 HOH HOH . 
S 5 HOH A 34 634 94 HOH HOH . 
S 5 HOH A 35 635 90 HOH HOH . 
S 5 HOH A 36 636 65 HOH HOH . 
S 5 HOH A 37 637 136 HOH HOH . 
S 5 HOH A 38 638 11 HOH HOH . 
S 5 HOH A 39 639 91 HOH HOH . 
S 5 HOH A 40 640 79 HOH HOH . 
S 5 HOH A 41 641 72 HOH HOH . 
S 5 HOH A 42 642 88 HOH HOH . 
S 5 HOH A 43 643 68 HOH HOH . 
S 5 HOH A 44 644 80 HOH HOH . 
S 5 HOH A 45 645 137 HOH HOH . 
S 5 HOH A 46 646 71 HOH HOH . 
T 5 HOH B 1 601 19 HOH HOH . 
T 5 HOH B 2 602 107 HOH HOH . 
T 5 HOH B 3 603 3 HOH HOH . 
T 5 HOH B 4 604 42 HOH HOH . 
T 5 HOH B 5 605 104 HOH HOH . 
T 5 HOH B 6 606 7 HOH HOH . 
T 5 HOH B 7 607 96 HOH HOH . 
T 5 HOH B 8 608 55 HOH HOH . 
T 5 HOH B 9 609 47 HOH HOH . 
T 5 HOH B 10 610 18 HOH HOH . 
T 5 HOH B 11 611 12 HOH HOH . 
T 5 HOH B 12 612 38 HOH HOH . 
T 5 HOH B 13 613 51 HOH HOH . 
T 5 HOH B 14 614 101 HOH HOH . 
T 5 HOH B 15 615 102 HOH HOH . 
T 5 HOH B 16 616 106 HOH HOH . 
T 5 HOH B 17 617 98 HOH HOH . 
T 5 HOH B 18 618 138 HOH HOH . 
T 5 HOH B 19 619 52 HOH HOH . 
T 5 HOH B 20 620 95 HOH HOH . 
T 5 HOH B 21 621 2 HOH HOH . 
T 5 HOH B 22 622 5 HOH HOH . 
T 5 HOH B 23 623 109 HOH HOH . 
T 5 HOH B 24 624 1 HOH HOH . 
T 5 HOH B 25 625 40 HOH HOH . 
T 5 HOH B 26 626 35 HOH HOH . 
T 5 HOH B 27 627 111 HOH HOH . 
T 5 HOH B 28 628 105 HOH HOH . 
T 5 HOH B 29 629 110 HOH HOH . 
T 5 HOH B 30 630 53 HOH HOH . 
T 5 HOH B 31 631 54 HOH HOH . 
T 5 HOH B 32 632 141 HOH HOH . 
U 5 HOH C 1 601 139 HOH HOH . 
U 5 HOH C 2 602 133 HOH HOH . 
U 5 HOH C 3 603 122 HOH HOH . 
U 5 HOH C 4 604 134 HOH HOH . 
U 5 HOH C 5 605 130 HOH HOH . 
U 5 HOH C 6 606 128 HOH HOH . 
U 5 HOH C 7 607 8 HOH HOH . 
U 5 HOH C 8 608 132 HOH HOH . 
U 5 HOH C 9 609 124 HOH HOH . 
U 5 HOH C 10 610 25 HOH HOH . 
U 5 HOH C 11 611 24 HOH HOH . 
U 5 HOH C 12 612 129 HOH HOH . 
U 5 HOH C 13 613 4 HOH HOH . 
U 5 HOH C 14 614 113 HOH HOH . 
U 5 HOH C 15 615 37 HOH HOH . 
U 5 HOH C 16 616 13 HOH HOH . 
U 5 HOH C 17 617 30 HOH HOH . 
U 5 HOH C 18 618 127 HOH HOH . 
U 5 HOH C 19 619 114 HOH HOH . 
U 5 HOH C 20 620 33 HOH HOH . 
U 5 HOH C 21 621 131 HOH HOH . 
U 5 HOH C 22 622 118 HOH HOH . 
U 5 HOH C 23 623 112 HOH HOH . 
U 5 HOH C 24 624 140 HOH HOH . 
U 5 HOH C 25 625 125 HOH HOH . 
U 5 HOH C 26 626 126 HOH HOH . 
U 5 HOH C 27 627 116 HOH HOH . 
U 5 HOH C 28 628 117 HOH HOH . 
U 5 HOH C 29 629 121 HOH HOH . 
U 5 HOH C 30 630 48 HOH HOH . 
U 5 HOH C 31 631 119 HOH HOH . 
U 5 HOH C 32 632 58 HOH HOH . 
U 5 HOH C 33 633 120 HOH HOH . 
U 5 HOH C 34 634 63 HOH HOH . 
U 5 HOH C 35 635 115 HOH HOH . 
U 5 HOH C 36 636 59 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 2 17.286 44.132 -13.807 1 67.38 ? C1 GOL 501 A 1 
HETATM 2 O O1 GOL . . . D 2 16.867 44.979 -12.714 1 59.81 ? O1 GOL 501 A 1 
HETATM 3 C C2 GOL . . . D 2 16.65 44.467 -15.165 1 66.77 ? C2 GOL 501 A 1 
HETATM 4 O O2 GOL . . . D 2 17.688 44.943 -16.018 1 79.29 ? O2 GOL 501 A 1 
HETATM 5 C C3 GOL . . . D 2 16.08 43.248 -15.875 1 60.75 ? C3 GOL 501 A 1 
HETATM 6 O O3 GOL . . . D 2 15.346 43.79 -16.945 1 59.18 ? O3 GOL 501 A 1 
#
_model_server_stats.io_time_ms              134 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#