data_5J1Y # _model_server_result.job_id 5G3Af0CpaLlkdopC7O3RJw _model_server_result.datetime_utc '2024-10-20 01:32:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j1y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5J1Y # _exptl.entry_id 5J1Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 197.274 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[(3S)-oxolan-3-yl]-1-(pyrrolidin-1-yl)propan-1-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5J1Y _cell.length_a 121.293 _cell.length_b 121.293 _cell.length_c 33.682 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J1Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 33.682 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C11 H19 N O2' _chem_comp.formula_weight 197.274 _chem_comp.id P87 _chem_comp.mon_nstd_flag . _chem_comp.name 3-[(3S)-oxolan-3-yl]-1-(pyrrolidin-1-yl)propan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C2 P87 sing 224 n n O C3 P87 sing 225 n n C2 C1 P87 sing 226 n n C3 C P87 sing 227 n n C7 C8 P87 sing 228 n n C7 N P87 sing 229 n n C8 C9 P87 sing 230 n n C1 C P87 sing 231 n n C1 C4 P87 sing 232 n n C5 C4 P87 sing 233 n n C5 C6 P87 sing 234 n n N C6 P87 sing 235 n n N C10 P87 sing 236 n n C6 O1 P87 doub 237 n n C9 C10 P87 sing 238 n n C10 H1 P87 sing 239 n n C10 H2 P87 sing 240 n n C9 H3 P87 sing 241 n n C9 H4 P87 sing 242 n n C8 H5 P87 sing 243 n n C8 H6 P87 sing 244 n n C7 H7 P87 sing 245 n n C7 H8 P87 sing 246 n n C5 H9 P87 sing 247 n n C5 H10 P87 sing 248 n n C4 H11 P87 sing 249 n n C4 H12 P87 sing 250 n n C1 H13 P87 sing 251 n n C2 H14 P87 sing 252 n n C2 H15 P87 sing 253 n n C3 H16 P87 sing 254 n n C3 H17 P87 sing 255 n n C H18 P87 sing 256 n n C H19 P87 sing 257 n n # _atom_sites.entry_id 5J1Y _atom_sites.fract_transf_matrix[1][1] 0.008244 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008244 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029689 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 P87 A 1 301 1 P87 p87 . C 2 P87 A 1 302 1 P87 p87 . D 3 HOH A 1 401 40 HOH HOH . D 3 HOH A 2 402 10 HOH HOH . D 3 HOH A 3 403 19 HOH HOH . D 3 HOH A 4 404 5 HOH HOH . D 3 HOH A 5 405 25 HOH HOH . D 3 HOH A 6 406 22 HOH HOH . D 3 HOH A 7 407 35 HOH HOH . D 3 HOH A 8 408 21 HOH HOH . D 3 HOH A 9 409 12 HOH HOH . D 3 HOH A 10 410 34 HOH HOH . D 3 HOH A 11 411 14 HOH HOH . D 3 HOH A 12 412 8 HOH HOH . D 3 HOH A 13 413 1 HOH HOH . D 3 HOH A 14 414 31 HOH HOH . D 3 HOH A 15 415 15 HOH HOH . D 3 HOH A 16 416 9 HOH HOH . D 3 HOH A 17 417 24 HOH HOH . D 3 HOH A 18 418 29 HOH HOH . D 3 HOH A 19 419 20 HOH HOH . D 3 HOH A 20 420 30 HOH HOH . D 3 HOH A 21 421 3 HOH HOH . D 3 HOH A 22 422 32 HOH HOH . D 3 HOH A 23 423 38 HOH HOH . D 3 HOH A 24 424 36 HOH HOH . D 3 HOH A 25 425 7 HOH HOH . D 3 HOH A 26 426 42 HOH HOH . D 3 HOH A 27 427 13 HOH HOH . D 3 HOH A 28 428 33 HOH HOH . D 3 HOH A 29 429 4 HOH HOH . D 3 HOH A 30 430 23 HOH HOH . D 3 HOH A 31 431 11 HOH HOH . D 3 HOH A 32 432 2 HOH HOH . D 3 HOH A 33 433 41 HOH HOH . D 3 HOH A 34 434 18 HOH HOH . D 3 HOH A 35 435 37 HOH HOH . D 3 HOH A 36 436 6 HOH HOH . D 3 HOH A 37 437 17 HOH HOH . D 3 HOH A 38 438 26 HOH HOH . D 3 HOH A 39 439 28 HOH HOH . D 3 HOH A 40 440 39 HOH HOH . D 3 HOH A 41 441 27 HOH HOH . D 3 HOH A 42 442 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 P87 . B . C 2 27.33 12.46 16.031 0.5 14.07 ? O1 P87 302 A 1 HETATM 2 C C6 P87 . B . C 2 27.841 12.34 14.915 0.5 14.17 ? C6 P87 302 A 1 HETATM 3 N N P87 . B . C 2 27.636 11.313 14.089 0.5 15 ? N P87 302 A 1 HETATM 4 C C10 P87 . B . C 2 28.226 11.251 12.745 0.5 16.21 ? C10 P87 302 A 1 HETATM 5 C C9 P87 . B . C 2 28.248 9.758 12.469 0.5 16.18 ? C9 P87 302 A 1 HETATM 6 C C8 P87 . B . C 2 27.47 9.079 13.587 0.5 16.31 ? C8 P87 302 A 1 HETATM 7 C C7 P87 . B . C 2 26.802 10.176 14.396 0.5 15.63 ? C7 P87 302 A 1 HETATM 8 C C5 P87 . B . C 2 28.7 13.486 14.433 0.5 13.25 ? C5 P87 302 A 1 HETATM 9 C C4 P87 . B . C 2 28.728 14.523 15.543 0.5 13.66 ? C4 P87 302 A 1 HETATM 10 C C1 P87 . B . C 2 29.889 15.48 15.293 0.5 14.36 ? C1 P87 302 A 1 HETATM 11 C C2 P87 . B . C 2 30.157 16.518 16.397 0.5 15.11 ? C2 P87 302 A 1 HETATM 12 O O P87 . B . C 2 30.451 17.77 15.742 0.5 15.55 ? O P87 302 A 1 HETATM 13 C C3 P87 . B . C 2 30.175 17.634 14.342 0.5 14.44 ? C3 P87 302 A 1 HETATM 14 C C P87 . B . C 2 29.521 16.302 14.069 0.5 14.61 ? C P87 302 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #