data_5J2U
#
_model_server_result.job_id            iBp0vvanVV1xLgCdzxIjag 
_model_server_result.datetime_utc      '2024-11-17 00:53:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5j2u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":503}' 
#
_entry.id    5J2U 
#
_exptl.entry_id    5J2U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5J2U 
_cell.length_a            104.567 
_cell.length_b            155.39 
_cell.length_c            182.524 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5J2U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 J N N 
? 7 M N N 
? 7 N N N 
? 7 P N N 
? 7 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 G C MVA 1 G MVA 1 1_555 G N VAL 2 G VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale2 G C VAL 2 G VAL 2 1_555 G N 3WT 3 G 3WT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.509 ? 
covale ? covale3 G C 3WT 3 G 3WT 3 1_555 G N 3WU 4 G 3WU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? 
covale ? covale4 G C 3WU 4 G 3WU 4 1_555 G N PHE 5 G PHE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale5 H C MVA 1 H MVA 1 1_555 H N VAL 2 H VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? 
covale ? covale6 H C VAL 2 H VAL 2 1_555 H N 3WT 3 H 3WT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.511 ? 
covale ? covale7 H C 3WT 3 H 3WT 3 1_555 H N 3WU 4 H 3WU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.487 ? 
covale ? covale8 H C 3WU 4 H 3WU 4 1_555 H N PHE 5 H PHE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? 
metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 K CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 K CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? 
metalc ? metalc3 A O THR 41 A THR 41 1_555 K CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? 
metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 K CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc5 A OE1 GLU 55 A GLU 55 1_555 K CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc6 A OE2 GLU 55 A GLU 55 1_555 K CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc7 A OE1 GLU 71 A GLU 71 1_555 J MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? 
metalc ? metalc8 I O2G GTP . A GTP 501 1_555 J MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc9 I O1B GTP . A GTP 501 1_555 J MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc10 B OE1 GLU 111 B GLU 113 1_555 N MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? 
metalc ? metalc11 M MG MG . B MG 502 1_555 U O HOH . B HOH 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? 
metalc ? metalc12 M MG MG . B MG 502 1_555 U O HOH . B HOH 632 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? 
metalc ? metalc13 M MG MG . B MG 502 1_555 U O HOH . B HOH 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? 
metalc ? metalc14 N MG MG . B MG 503 1_555 U O HOH . B HOH 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
metalc ? metalc15 N MG MG . B MG 503 1_555 V O HOH . C HOH 613 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc16 C OD1 ASP 39 C ASP 39 1_555 Q MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc17 C OD2 ASP 39 C ASP 39 1_555 Q MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc18 C OG1 THR 41 C THR 41 1_555 Q MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc19 C O GLY 44 C GLY 44 1_555 Q MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? 
metalc ? metalc20 C OE2 GLU 55 C GLU 55 1_555 Q MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? 
metalc ? metalc21 O O1G GTP . C GTP 501 1_555 P MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc22 O O1B GTP . C GTP 501 1_555 P MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc23 P MG MG . C MG 502 1_555 V O HOH . C HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc24 P MG MG . C MG 502 1_555 V O HOH . C HOH 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc25 P MG MG . C MG 502 1_555 V O HOH . C HOH 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc26 P MG MG . C MG 502 1_555 W O HOH . D HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5J2U 
_atom_sites.fract_transf_matrix[1][1]    0.009563 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006435 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005479 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 6 GTP A 1 501 501 GTP GTP . 
J 7 MG A 1 502 502 MG MG . 
K 8 CA A 1 503 1 CA CA . 
L 9 GDP B 1 501 501 GDP GDP . 
M 7 MG B 1 502 1 MG MG . 
N 7 MG B 1 503 2 MG MG . 
O 6 GTP C 1 501 501 GTP GTP . 
P 7 MG C 1 502 502 MG MG . 
Q 7 MG C 1 503 1 MG MG . 
R 9 GDP D 1 501 501 GDP GDP . 
S 10 ACP F 1 401 1 ACP ACP . 
T 11 HOH A 1 601 26 HOH HOH . 
T 11 HOH A 2 602 99 HOH HOH . 
T 11 HOH A 3 603 6 HOH HOH . 
T 11 HOH A 4 604 41 HOH HOH . 
T 11 HOH A 5 605 45 HOH HOH . 
T 11 HOH A 6 606 83 HOH HOH . 
T 11 HOH A 7 607 37 HOH HOH . 
T 11 HOH A 8 608 110 HOH HOH . 
T 11 HOH A 9 609 54 HOH HOH . 
T 11 HOH A 10 610 77 HOH HOH . 
T 11 HOH A 11 611 62 HOH HOH . 
T 11 HOH A 12 612 104 HOH HOH . 
U 11 HOH B 1 601 140 HOH HOH . 
U 11 HOH B 2 602 149 HOH HOH . 
U 11 HOH B 3 603 68 HOH HOH . 
U 11 HOH B 4 604 36 HOH HOH . 
U 11 HOH B 5 605 86 HOH HOH . 
U 11 HOH B 6 606 130 HOH HOH . 
U 11 HOH B 7 607 59 HOH HOH . 
U 11 HOH B 8 608 3 HOH HOH . 
U 11 HOH B 9 609 85 HOH HOH . 
U 11 HOH B 10 610 138 HOH HOH . 
U 11 HOH B 11 611 13 HOH HOH . 
U 11 HOH B 12 612 23 HOH HOH . 
U 11 HOH B 13 613 2 HOH HOH . 
U 11 HOH B 14 614 38 HOH HOH . 
U 11 HOH B 15 615 131 HOH HOH . 
U 11 HOH B 16 616 141 HOH HOH . 
U 11 HOH B 17 617 132 HOH HOH . 
U 11 HOH B 18 618 127 HOH HOH . 
U 11 HOH B 19 619 65 HOH HOH . 
U 11 HOH B 20 620 126 HOH HOH . 
U 11 HOH B 21 621 147 HOH HOH . 
U 11 HOH B 22 622 144 HOH HOH . 
U 11 HOH B 23 623 67 HOH HOH . 
U 11 HOH B 24 624 129 HOH HOH . 
U 11 HOH B 25 625 142 HOH HOH . 
U 11 HOH B 26 626 8 HOH HOH . 
U 11 HOH B 27 627 113 HOH HOH . 
U 11 HOH B 28 628 122 HOH HOH . 
U 11 HOH B 29 629 151 HOH HOH . 
U 11 HOH B 30 630 134 HOH HOH . 
U 11 HOH B 31 631 81 HOH HOH . 
U 11 HOH B 32 632 1 HOH HOH . 
U 11 HOH B 33 633 145 HOH HOH . 
U 11 HOH B 34 634 80 HOH HOH . 
U 11 HOH B 35 635 87 HOH HOH . 
U 11 HOH B 36 636 47 HOH HOH . 
U 11 HOH B 37 637 89 HOH HOH . 
U 11 HOH B 38 638 63 HOH HOH . 
U 11 HOH B 39 639 150 HOH HOH . 
U 11 HOH B 40 640 143 HOH HOH . 
U 11 HOH B 41 641 128 HOH HOH . 
U 11 HOH B 42 642 82 HOH HOH . 
U 11 HOH B 43 643 117 HOH HOH . 
U 11 HOH B 44 644 139 HOH HOH . 
U 11 HOH B 45 645 123 HOH HOH . 
U 11 HOH B 46 646 17 HOH HOH . 
U 11 HOH B 47 647 90 HOH HOH . 
U 11 HOH B 48 648 119 HOH HOH . 
U 11 HOH B 49 649 95 HOH HOH . 
U 11 HOH B 50 650 29 HOH HOH . 
U 11 HOH B 51 651 154 HOH HOH . 
U 11 HOH B 52 652 137 HOH HOH . 
V 11 HOH C 1 601 76 HOH HOH . 
V 11 HOH C 2 602 22 HOH HOH . 
V 11 HOH C 3 603 79 HOH HOH . 
V 11 HOH C 4 604 50 HOH HOH . 
V 11 HOH C 5 605 97 HOH HOH . 
V 11 HOH C 6 606 162 HOH HOH . 
V 11 HOH C 7 607 20 HOH HOH . 
V 11 HOH C 8 608 160 HOH HOH . 
V 11 HOH C 9 609 44 HOH HOH . 
V 11 HOH C 10 610 52 HOH HOH . 
V 11 HOH C 11 611 32 HOH HOH . 
V 11 HOH C 12 612 64 HOH HOH . 
V 11 HOH C 13 613 148 HOH HOH . 
V 11 HOH C 14 614 74 HOH HOH . 
V 11 HOH C 15 615 42 HOH HOH . 
V 11 HOH C 16 616 10 HOH HOH . 
V 11 HOH C 17 617 48 HOH HOH . 
V 11 HOH C 18 618 125 HOH HOH . 
V 11 HOH C 19 619 133 HOH HOH . 
V 11 HOH C 20 620 69 HOH HOH . 
V 11 HOH C 21 621 27 HOH HOH . 
V 11 HOH C 22 622 159 HOH HOH . 
V 11 HOH C 23 623 106 HOH HOH . 
V 11 HOH C 24 624 7 HOH HOH . 
V 11 HOH C 25 625 91 HOH HOH . 
V 11 HOH C 26 626 19 HOH HOH . 
V 11 HOH C 27 627 60 HOH HOH . 
V 11 HOH C 28 628 161 HOH HOH . 
V 11 HOH C 29 629 24 HOH HOH . 
V 11 HOH C 30 630 14 HOH HOH . 
V 11 HOH C 31 631 51 HOH HOH . 
V 11 HOH C 32 632 33 HOH HOH . 
V 11 HOH C 33 633 121 HOH HOH . 
V 11 HOH C 34 634 53 HOH HOH . 
V 11 HOH C 35 635 40 HOH HOH . 
V 11 HOH C 36 636 58 HOH HOH . 
V 11 HOH C 37 637 66 HOH HOH . 
V 11 HOH C 38 638 88 HOH HOH . 
V 11 HOH C 39 639 96 HOH HOH . 
V 11 HOH C 40 640 16 HOH HOH . 
V 11 HOH C 41 641 124 HOH HOH . 
V 11 HOH C 42 642 136 HOH HOH . 
V 11 HOH C 43 643 156 HOH HOH . 
V 11 HOH C 44 644 73 HOH HOH . 
V 11 HOH C 45 645 100 HOH HOH . 
V 11 HOH C 46 646 98 HOH HOH . 
V 11 HOH C 47 647 135 HOH HOH . 
W 11 HOH D 1 601 158 HOH HOH . 
W 11 HOH D 2 602 94 HOH HOH . 
W 11 HOH D 3 603 101 HOH HOH . 
W 11 HOH D 4 604 43 HOH HOH . 
W 11 HOH D 5 605 72 HOH HOH . 
W 11 HOH D 6 606 30 HOH HOH . 
W 11 HOH D 7 607 111 HOH HOH . 
W 11 HOH D 8 608 28 HOH HOH . 
W 11 HOH D 9 609 108 HOH HOH . 
X 11 HOH E 1 201 39 HOH HOH . 
X 11 HOH E 2 202 15 HOH HOH . 
X 11 HOH E 3 203 107 HOH HOH . 
X 11 HOH E 4 204 105 HOH HOH . 
X 11 HOH E 5 205 18 HOH HOH . 
X 11 HOH E 6 206 103 HOH HOH . 
X 11 HOH E 7 207 34 HOH HOH . 
X 11 HOH E 8 208 55 HOH HOH . 
X 11 HOH E 9 209 71 HOH HOH . 
Y 11 HOH F 1 501 46 HOH HOH . 
Y 11 HOH F 2 502 11 HOH HOH . 
Y 11 HOH F 3 503 92 HOH HOH . 
Y 11 HOH F 4 504 118 HOH HOH . 
Y 11 HOH F 5 505 35 HOH HOH . 
Y 11 HOH F 6 506 70 HOH HOH . 
Y 11 HOH F 7 507 49 HOH HOH . 
Y 11 HOH F 8 508 75 HOH HOH . 
Y 11 HOH F 9 509 21 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         Q 
_atom_site.label_entity_id       7 
_atom_site.Cartn_x               13.435 
_atom_site.Cartn_y               54.448 
_atom_site.Cartn_z               -10.559 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        87.84 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           503 
_atom_site.auth_asym_id          C 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           35 
_model_server_stats.create_model_time_ms    63 
_model_server_stats.query_time_ms           349 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#