data_5J3J # _model_server_result.job_id -n8Z6Pccapa0NSDisOvJgQ _model_server_result.datetime_utc '2024-10-19 16:46:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j3j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":802}' # _entry.id 5J3J # _exptl.entry_id 5J3J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.95 _cell.angle_gamma 90 _cell.entry_id 5J3J _cell.length_a 65.36 _cell.length_b 126.82 _cell.length_c 112.62 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J3J _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 G N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 MAN NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 MAN MAN C1 O1 . O3 HO3 . sing 3 ? 2 4 3 MAN MAN C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG F 801 NAG 2 n C MAN 2 C 2 MAN F 802 MAN 2 n C MAN 3 C 3 MAN F 803 MAN 2 n C MAN 4 C 4 MAN F 804 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 289 A CYS 328 1_555 A SG CYS 300 A CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 A SG CYS 346 A CYS 385 1_555 A SG CYS 355 A CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 405 A CYS 444 1_555 A SG CYS 408 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 415 A CYS 454 1_555 A SG CYS 433 A CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf5 A SG CYS 610 A CYS 649 1_555 A SG CYS 723 A CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf6 B SG CYS 289 B CYS 328 1_555 B SG CYS 300 B CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf7 B SG CYS 346 B CYS 385 1_555 B SG CYS 355 B CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 B SG CYS 405 B CYS 444 1_555 B SG CYS 408 B CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf9 B SG CYS 415 B CYS 454 1_555 B SG CYS 433 B CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf10 B SG CYS 610 B CYS 649 1_555 B SG CYS 723 B CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A ND2 ASN 190 A ASN 229 1_555 E C1 NAG . A NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale2 B ND2 ASN 190 B ASN 229 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale3 B ND2 ASN 242 B ASN 281 1_555 G C1 NAG . B NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale4 C O4 NAG . C NAG 1 1_555 C C1 MAN . C MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 C O3 MAN . C MAN 2 1_555 C C1 MAN . C MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale6 C O3 MAN . C MAN 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5J3J _atom_sites.fract_transf_matrix[1][1] 0.0153 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002684 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007885 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009015 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 HL1 A 1 801 2 HL1 HL1 . E 4 NAG A 1 802 808 NAG NAG . F 3 HL1 B 1 801 1 HL1 HL1 . G 4 NAG B 1 802 809 NAG NAG . H 5 HOH A 1 901 102 HOH HOH . H 5 HOH A 2 902 35 HOH HOH . H 5 HOH A 3 903 82 HOH HOH . H 5 HOH A 4 904 25 HOH HOH . H 5 HOH A 5 905 29 HOH HOH . H 5 HOH A 6 906 12 HOH HOH . H 5 HOH A 7 907 11 HOH HOH . H 5 HOH A 8 908 30 HOH HOH . H 5 HOH A 9 909 23 HOH HOH . H 5 HOH A 10 910 14 HOH HOH . H 5 HOH A 11 911 19 HOH HOH . H 5 HOH A 12 912 34 HOH HOH . H 5 HOH A 13 913 18 HOH HOH . H 5 HOH A 14 914 20 HOH HOH . H 5 HOH A 15 915 28 HOH HOH . H 5 HOH A 16 916 83 HOH HOH . H 5 HOH A 17 917 74 HOH HOH . H 5 HOH A 18 918 101 HOH HOH . H 5 HOH A 19 919 72 HOH HOH . H 5 HOH A 20 920 13 HOH HOH . H 5 HOH A 21 921 31 HOH HOH . H 5 HOH A 22 922 22 HOH HOH . H 5 HOH A 23 923 36 HOH HOH . H 5 HOH A 24 924 26 HOH HOH . H 5 HOH A 25 925 92 HOH HOH . H 5 HOH A 26 926 95 HOH HOH . H 5 HOH A 27 927 86 HOH HOH . H 5 HOH A 28 928 21 HOH HOH . H 5 HOH A 29 929 7 HOH HOH . H 5 HOH A 30 930 70 HOH HOH . H 5 HOH A 31 931 99 HOH HOH . H 5 HOH A 32 932 3 HOH HOH . H 5 HOH A 33 933 32 HOH HOH . H 5 HOH A 34 934 81 HOH HOH . H 5 HOH A 35 935 93 HOH HOH . H 5 HOH A 36 936 87 HOH HOH . H 5 HOH A 37 937 78 HOH HOH . H 5 HOH A 38 938 100 HOH HOH . H 5 HOH A 39 939 96 HOH HOH . H 5 HOH A 40 940 6 HOH HOH . H 5 HOH A 41 941 71 HOH HOH . H 5 HOH A 42 942 97 HOH HOH . H 5 HOH A 43 943 94 HOH HOH . H 5 HOH A 44 944 84 HOH HOH . H 5 HOH A 45 945 90 HOH HOH . H 5 HOH A 46 946 73 HOH HOH . H 5 HOH A 47 947 16 HOH HOH . H 5 HOH A 48 948 98 HOH HOH . H 5 HOH A 49 949 15 HOH HOH . H 5 HOH A 50 950 89 HOH HOH . H 5 HOH A 51 951 103 HOH HOH . H 5 HOH A 52 952 8 HOH HOH . H 5 HOH A 53 953 69 HOH HOH . H 5 HOH A 54 954 85 HOH HOH . H 5 HOH A 55 955 88 HOH HOH . H 5 HOH A 56 956 76 HOH HOH . H 5 HOH A 57 957 91 HOH HOH . H 5 HOH A 58 958 79 HOH HOH . H 5 HOH A 59 959 80 HOH HOH . I 5 HOH B 1 901 49 HOH HOH . I 5 HOH B 2 902 104 HOH HOH . I 5 HOH B 3 903 41 HOH HOH . I 5 HOH B 4 904 46 HOH HOH . I 5 HOH B 5 905 59 HOH HOH . I 5 HOH B 6 906 57 HOH HOH . I 5 HOH B 7 907 38 HOH HOH . I 5 HOH B 8 908 17 HOH HOH . I 5 HOH B 9 909 2 HOH HOH . I 5 HOH B 10 910 67 HOH HOH . I 5 HOH B 11 911 5 HOH HOH . I 5 HOH B 12 912 55 HOH HOH . I 5 HOH B 13 913 75 HOH HOH . I 5 HOH B 14 914 66 HOH HOH . I 5 HOH B 15 915 61 HOH HOH . I 5 HOH B 16 916 9 HOH HOH . I 5 HOH B 17 917 37 HOH HOH . I 5 HOH B 18 918 39 HOH HOH . I 5 HOH B 19 919 52 HOH HOH . I 5 HOH B 20 920 48 HOH HOH . I 5 HOH B 21 921 56 HOH HOH . I 5 HOH B 22 922 64 HOH HOH . I 5 HOH B 23 923 4 HOH HOH . I 5 HOH B 24 924 65 HOH HOH . I 5 HOH B 25 925 51 HOH HOH . I 5 HOH B 26 926 40 HOH HOH . I 5 HOH B 27 927 53 HOH HOH . I 5 HOH B 28 928 68 HOH HOH . I 5 HOH B 29 929 77 HOH HOH . I 5 HOH B 30 930 45 HOH HOH . I 5 HOH B 31 931 62 HOH HOH . I 5 HOH B 32 932 58 HOH HOH . I 5 HOH B 33 933 44 HOH HOH . I 5 HOH B 34 934 43 HOH HOH . I 5 HOH B 35 935 47 HOH HOH . I 5 HOH B 36 936 42 HOH HOH . I 5 HOH B 37 937 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 4 40.226 20.289 52.616 1 35.44 ? C1 NAG 802 A 1 HETATM 2 C C2 NAG . . . E 4 41.395 20.975 51.898 1 36.04 ? C2 NAG 802 A 1 HETATM 3 C C3 NAG . . . E 4 42.317 21.678 52.888 1 35.98 ? C3 NAG 802 A 1 HETATM 4 C C4 NAG . . . E 4 41.506 22.708 53.644 1 36.13 ? C4 NAG 802 A 1 HETATM 5 C C5 NAG . . . E 4 40.396 21.964 54.378 1 36.19 ? C5 NAG 802 A 1 HETATM 6 C C6 NAG . . . E 4 39.529 22.957 55.147 1 35.92 ? C6 NAG 802 A 1 HETATM 7 C C7 NAG . . . E 4 41.893 19.878 49.764 1 35.64 ? C7 NAG 802 A 1 HETATM 8 C C8 NAG . . . E 4 42.75 18.889 49.016 1 35.44 ? C8 NAG 802 A 1 HETATM 9 N N2 NAG . . . E 4 42.152 20.048 51.065 1 35.76 ? N2 NAG 802 A 1 HETATM 10 O O3 NAG . . . E 4 43.351 22.333 52.203 1 37.03 ? O3 NAG 802 A 1 HETATM 11 O O4 NAG . . . E 4 42.329 23.455 54.521 1 35.87 ? O4 NAG 802 A 1 HETATM 12 O O5 NAG . . . E 4 39.584 21.24 53.458 1 35.24 ? O5 NAG 802 A 1 HETATM 13 O O6 NAG . . . E 4 38.434 22.268 55.701 1 37.19 ? O6 NAG 802 A 1 HETATM 14 O O7 NAG . . . E 4 40.996 20.479 49.168 1 35.04 ? O7 NAG 802 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 375 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #