data_5J3L # _model_server_result.job_id 5lTFAbBDB19oOT9ZZbrFrA _model_server_result.datetime_utc '2024-10-20 00:42:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j3l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5J3L # _exptl.entry_id 5J3L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 231.355 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(2-cyclopentylethyl)sulfonyl]pyrrolidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5J3L _cell.length_a 121.13 _cell.length_b 121.13 _cell.length_c 34.05 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J3L _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H21 N O2 S' _chem_comp.formula_weight 231.355 _chem_comp.id 6FR _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(2-cyclopentylethyl)sulfonyl]pyrrolidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O S 6FR doub 1 n n C10 C9 6FR sing 2 n n C10 N 6FR sing 3 n n C9 C8 6FR sing 4 n n N S 6FR sing 5 n n N C7 6FR sing 6 n n S O1 6FR doub 7 n n S C6 6FR sing 8 n n C8 C7 6FR sing 9 n n C5 C6 6FR sing 10 n n C5 C1 6FR sing 11 n n C C1 6FR sing 12 n n C C4 6FR sing 13 n n C1 C2 6FR sing 14 n n C4 C3 6FR sing 15 n n C2 C3 6FR sing 16 n n C3 H1 6FR sing 17 n n C3 H2 6FR sing 18 n n C5 H3 6FR sing 19 n n C5 H4 6FR sing 20 n n C7 H5 6FR sing 21 n n C7 H6 6FR sing 22 n n C8 H7 6FR sing 23 n n C8 H8 6FR sing 24 n n C9 H9 6FR sing 25 n n C9 H10 6FR sing 26 n n C10 H11 6FR sing 27 n n C10 H12 6FR sing 28 n n C6 H13 6FR sing 29 n n C6 H14 6FR sing 30 n n C1 H15 6FR sing 31 n n C2 H16 6FR sing 32 n n C2 H17 6FR sing 33 n n C4 H18 6FR sing 34 n n C4 H19 6FR sing 35 n n C H20 6FR sing 36 n n C H21 6FR sing 37 n n # _atom_sites.entry_id 5J3L _atom_sites.fract_transf_matrix[1][1] 0.008256 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008256 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029369 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6FR A 1 301 1 6FR 105 . C 3 HOH A 1 401 41 HOH HOH . C 3 HOH A 2 402 42 HOH HOH . C 3 HOH A 3 403 17 HOH HOH . C 3 HOH A 4 404 35 HOH HOH . C 3 HOH A 5 405 8 HOH HOH . C 3 HOH A 6 406 12 HOH HOH . C 3 HOH A 7 407 7 HOH HOH . C 3 HOH A 8 408 37 HOH HOH . C 3 HOH A 9 409 43 HOH HOH . C 3 HOH A 10 410 30 HOH HOH . C 3 HOH A 11 411 47 HOH HOH . C 3 HOH A 12 412 20 HOH HOH . C 3 HOH A 13 413 9 HOH HOH . C 3 HOH A 14 414 19 HOH HOH . C 3 HOH A 15 415 5 HOH HOH . C 3 HOH A 16 416 14 HOH HOH . C 3 HOH A 17 417 13 HOH HOH . C 3 HOH A 18 418 11 HOH HOH . C 3 HOH A 19 419 16 HOH HOH . C 3 HOH A 20 420 23 HOH HOH . C 3 HOH A 21 421 28 HOH HOH . C 3 HOH A 22 422 34 HOH HOH . C 3 HOH A 23 423 45 HOH HOH . C 3 HOH A 24 424 40 HOH HOH . C 3 HOH A 25 425 2 HOH HOH . C 3 HOH A 26 426 27 HOH HOH . C 3 HOH A 27 427 36 HOH HOH . C 3 HOH A 28 428 18 HOH HOH . C 3 HOH A 29 429 1 HOH HOH . C 3 HOH A 30 430 6 HOH HOH . C 3 HOH A 31 431 31 HOH HOH . C 3 HOH A 32 432 21 HOH HOH . C 3 HOH A 33 433 32 HOH HOH . C 3 HOH A 34 434 29 HOH HOH . C 3 HOH A 35 435 15 HOH HOH . C 3 HOH A 36 436 4 HOH HOH . C 3 HOH A 37 437 10 HOH HOH . C 3 HOH A 38 438 3 HOH HOH . C 3 HOH A 39 439 24 HOH HOH . C 3 HOH A 40 440 46 HOH HOH . C 3 HOH A 41 441 39 HOH HOH . C 3 HOH A 42 442 38 HOH HOH . C 3 HOH A 43 443 44 HOH HOH . C 3 HOH A 44 444 26 HOH HOH . C 3 HOH A 45 445 33 HOH HOH . C 3 HOH A 46 446 25 HOH HOH . C 3 HOH A 47 447 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 6FR . . . B 2 14.158 26.511 2.466 1 20.62 ? O1 6FR 301 A 1 HETATM 2 C C3 6FR . . . B 2 9.203 26.832 4.674 1 30.6 ? C3 6FR 301 A 1 HETATM 3 C C5 6FR . . . B 2 11.442 27.729 2.476 1 30.41 ? C5 6FR 301 A 1 HETATM 4 C C7 6FR . . . B 2 16.121 28.841 2.827 1 21.35 ? C7 6FR 301 A 1 HETATM 5 C C8 6FR . . . B 2 17.045 29.92 2.324 1 23.22 ? C8 6FR 301 A 1 HETATM 6 C C9 6FR . . . B 2 16.39 30.56 1.165 1 25.34 ? C9 6FR 301 A 1 HETATM 7 S S 6FR . . . B 2 13.833 27.808 1.844 1 19.84 ? S 6FR 301 A 1 HETATM 8 O O 6FR . . . B 2 13.224 27.757 0.531 1 23.27 ? O 6FR 301 A 1 HETATM 9 N N 6FR . . . B 2 15.029 28.711 1.776 1 19.79 ? N 6FR 301 A 1 HETATM 10 C C10 6FR . . . B 2 15.293 29.707 0.7 1 22.45 ? C10 6FR 301 A 1 HETATM 11 C C6 6FR . . . B 2 12.749 28.569 2.86 1 24.68 ? C6 6FR 301 A 1 HETATM 12 C C1 6FR . . . B 2 10.173 28.258 3.074 1 29.98 ? C1 6FR 301 A 1 HETATM 13 C C2 6FR . . . B 2 10.156 27.968 4.532 1 31.29 ? C2 6FR 301 A 1 HETATM 14 C C4 6FR . . . B 2 8.194 26.912 3.574 1 32.27 ? C4 6FR 301 A 1 HETATM 15 C C 6FR . . . B 2 8.869 27.699 2.512 1 32.8 ? C 6FR 301 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #