data_5J3R # _model_server_result.job_id BmE7P-83Ir4RD0kQlTmKbQ _model_server_result.datetime_utc '2024-10-14 04:24:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j3r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5J3R # _exptl.entry_id 5J3R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.323 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLUTATHIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5J3R _cell.length_a 58.657 _cell.length_b 58.657 _cell.length_c 161.763 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J3R _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 100 A CYS 136 1_555 B FE1 FES . A FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc2 A SG CYS 100 A CYS 136 1_555 B FE2 FES . A FES 301 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc3 B FE1 FES . A FES 301 1_555 C SG2 GSH . A GSH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc4 B FE2 FES . A FES 301 1_555 C SG2 GSH . A GSH 302 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? # _chem_comp.formula 'C10 H17 N3 O6 S' _chem_comp.formula_weight 307.323 _chem_comp.id GSH _chem_comp.mon_nstd_flag . _chem_comp.name GLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GSH sing 133 n n N1 HN11 GSH sing 134 n n N1 HN12 GSH sing 135 n n CA1 C1 GSH sing 136 n n CA1 CB1 GSH sing 137 n n CA1 HA1 GSH sing 138 n n C1 O11 GSH doub 139 n n C1 O12 GSH sing 140 n n O12 H12 GSH sing 141 n n CB1 CG1 GSH sing 142 n n CB1 HB12 GSH sing 143 n n CB1 HB13 GSH sing 144 n n CG1 CD1 GSH sing 145 n n CG1 HG12 GSH sing 146 n n CG1 HG13 GSH sing 147 n n CD1 OE1 GSH doub 148 n n CD1 N2 GSH sing 149 n n N2 CA2 GSH sing 150 n n N2 HN2 GSH sing 151 n n CA2 C2 GSH sing 152 n n CA2 CB2 GSH sing 153 n n CA2 HA2 GSH sing 154 n n C2 O2 GSH doub 155 n n C2 N3 GSH sing 156 n n CB2 SG2 GSH sing 157 n n CB2 HB22 GSH sing 158 n n CB2 HB23 GSH sing 159 n n SG2 HSG GSH sing 160 n n N3 CA3 GSH sing 161 n n N3 HN3 GSH sing 162 n n CA3 C3 GSH sing 163 n n CA3 HA31 GSH sing 164 n n CA3 HA32 GSH sing 165 n n C3 O31 GSH doub 166 n n C3 O32 GSH sing 167 n n O32 H32 GSH sing 168 n n # _atom_sites.entry_id 5J3R _atom_sites.fract_transf_matrix[1][1] 0.017048 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017048 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006182 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FES A 1 301 1 FES FES . C 3 GSH A 1 302 2 GSH GSH . D 4 HOH A 1 401 1 HOH HOH . D 4 HOH A 2 402 40 HOH HOH . D 4 HOH A 3 403 50 HOH HOH . D 4 HOH A 4 404 18 HOH HOH . D 4 HOH A 5 405 27 HOH HOH . D 4 HOH A 6 406 51 HOH HOH . D 4 HOH A 7 407 11 HOH HOH . D 4 HOH A 8 408 47 HOH HOH . D 4 HOH A 9 409 33 HOH HOH . D 4 HOH A 10 410 6 HOH HOH . D 4 HOH A 11 411 37 HOH HOH . D 4 HOH A 12 412 5 HOH HOH . D 4 HOH A 13 413 45 HOH HOH . D 4 HOH A 14 414 10 HOH HOH . D 4 HOH A 15 415 22 HOH HOH . D 4 HOH A 16 416 39 HOH HOH . D 4 HOH A 17 417 34 HOH HOH . D 4 HOH A 18 418 13 HOH HOH . D 4 HOH A 19 419 36 HOH HOH . D 4 HOH A 20 420 44 HOH HOH . D 4 HOH A 21 421 15 HOH HOH . D 4 HOH A 22 422 4 HOH HOH . D 4 HOH A 23 423 52 HOH HOH . D 4 HOH A 24 424 3 HOH HOH . D 4 HOH A 25 425 38 HOH HOH . D 4 HOH A 26 426 9 HOH HOH . D 4 HOH A 27 427 26 HOH HOH . D 4 HOH A 28 428 31 HOH HOH . D 4 HOH A 29 429 12 HOH HOH . D 4 HOH A 30 430 17 HOH HOH . D 4 HOH A 31 431 29 HOH HOH . D 4 HOH A 32 432 32 HOH HOH . D 4 HOH A 33 433 7 HOH HOH . D 4 HOH A 34 434 53 HOH HOH . D 4 HOH A 35 435 14 HOH HOH . D 4 HOH A 36 436 49 HOH HOH . D 4 HOH A 37 437 46 HOH HOH . D 4 HOH A 38 438 42 HOH HOH . D 4 HOH A 39 439 35 HOH HOH . D 4 HOH A 40 440 23 HOH HOH . D 4 HOH A 41 441 28 HOH HOH . D 4 HOH A 42 442 48 HOH HOH . D 4 HOH A 43 443 16 HOH HOH . D 4 HOH A 44 444 30 HOH HOH . D 4 HOH A 45 445 41 HOH HOH . D 4 HOH A 46 446 8 HOH HOH . D 4 HOH A 47 447 2 HOH HOH . D 4 HOH A 48 448 19 HOH HOH . D 4 HOH A 49 449 43 HOH HOH . D 4 HOH A 50 450 20 HOH HOH . D 4 HOH A 51 451 25 HOH HOH . D 4 HOH A 52 452 21 HOH HOH . D 4 HOH A 53 453 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GSH . . . C 3 1.289 -1.555 8.779 1 43.09 ? N1 GSH 302 A 1 HETATM 2 C CA1 GSH . . . C 3 1.403 -0.126 8.616 1 39.13 ? CA1 GSH 302 A 1 HETATM 3 C C1 GSH . . . C 3 0.082 0.431 8.117 1 37.85 ? C1 GSH 302 A 1 HETATM 4 O O11 GSH . . . C 3 -0.796 -0.396 7.796 1 38.78 ? O11 GSH 302 A 1 HETATM 5 O O12 GSH . . . C 3 -0.134 1.673 8.058 1 33.77 ? O12 GSH 302 A 1 HETATM 6 C CB1 GSH . . . C 3 2.581 0.103 7.68 1 40.08 ? CB1 GSH 302 A 1 HETATM 7 C CG1 GSH . . . C 3 2.786 1.59 7.429 1 42.16 ? CG1 GSH 302 A 1 HETATM 8 C CD1 GSH . . . C 3 4.103 1.855 6.742 1 44.12 ? CD1 GSH 302 A 1 HETATM 9 O OE1 GSH . . . C 3 4.997 1.031 6.828 1 46.12 ? OE1 GSH 302 A 1 HETATM 10 N N2 GSH . . . C 3 4.195 3.027 6.111 1 40.47 ? N2 GSH 302 A 1 HETATM 11 C CA2 GSH . . . C 3 5.272 3.46 5.24 1 42.54 ? CA2 GSH 302 A 1 HETATM 12 C C2 GSH . . . C 3 6.122 4.484 5.94 1 43.54 ? C2 GSH 302 A 1 HETATM 13 O O2 GSH . . . C 3 5.573 5.312 6.65 1 47.45 ? O2 GSH 302 A 1 HETATM 14 C CB2 GSH . . . C 3 4.658 4.027 3.945 1 38.78 ? CB2 GSH 302 A 1 HETATM 15 S SG2 GSH . . . C 3 3.572 2.817 3.103 1 40.38 ? SG2 GSH 302 A 1 HETATM 16 N N3 GSH . . . C 3 7.45 4.451 5.772 1 42.78 ? N3 GSH 302 A 1 HETATM 17 C CA3 GSH . . . C 3 8.336 5.553 6.129 1 44.89 ? CA3 GSH 302 A 1 HETATM 18 C C3 GSH . . . C 3 8.016 6.908 5.502 1 54.01 ? C3 GSH 302 A 1 HETATM 19 O O31 GSH . . . C 3 7.279 7.017 4.484 1 52.74 ? O31 GSH 302 A 1 HETATM 20 O O32 GSH . . . C 3 8.534 7.918 6.036 1 59.45 ? O32 GSH 302 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 20 #