data_5J3T
#
_model_server_result.job_id            8J2paLdOXNNLx8nwdKpU5g 
_model_server_result.datetime_utc      '2024-11-01 09:32:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5j3t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":303}' 
#
_entry.id    5J3T 
#
_exptl.entry_id    5J3T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              46.025 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FORMIC ACID' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          114.04 
_cell.angle_gamma         90 
_cell.entry_id            5J3T 
_cell.length_a            98.809 
_cell.length_b            41.371 
_cell.length_c            93.718 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5J3T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OH TYR 92 B TYR 92 1_555 I MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc2 B O PHE 185 B PHE 185 1_555 I MG MG . B MG 304 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc3 I MG MG . B MG 304 1_555 K O HOH . B HOH 429 4_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc4 I MG MG . B MG 304 1_555 K O HOH . B HOH 439 4_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? 
metalc ? metalc5 I MG MG . B MG 304 1_555 K O HOH . B HOH 463 4_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? 
metalc ? metalc6 I MG MG . B MG 304 1_555 K O HOH . B HOH 513 4_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
#
_chem_comp.formula           'C H2 O2' 
_chem_comp.formula_weight    46.025 
_chem_comp.id                FMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FORMIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O1 FMT doub 83 n n 
C O2 FMT sing 84 n n 
C H FMT sing 85 n n 
O2 HO2 FMT sing 86 n n 
#
_atom_sites.entry_id                     5J3T 
_atom_sites.fract_transf_matrix[1][1]    0.010121 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004514 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024172 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011684 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 FMT A 1 201 1 FMT FMT . 
E 4 FMT A 1 202 5 FMT FMT . 
F 4 FMT B 1 301 2 FMT FMT . 
G 4 FMT B 1 302 3 FMT FMT . 
H 4 FMT B 1 303 4 FMT FMT . 
I 5 MG B 1 304 1 MG MG . 
J 6 HOH A 1 301 69 HOH HOH . 
J 6 HOH A 2 302 168 HOH HOH . 
J 6 HOH A 3 303 68 HOH HOH . 
J 6 HOH A 4 304 193 HOH HOH . 
J 6 HOH A 5 305 17 HOH HOH . 
J 6 HOH A 6 306 20 HOH HOH . 
J 6 HOH A 7 307 23 HOH HOH . 
J 6 HOH A 8 308 90 HOH HOH . 
J 6 HOH A 9 309 135 HOH HOH . 
J 6 HOH A 10 310 35 HOH HOH . 
J 6 HOH A 11 311 138 HOH HOH . 
J 6 HOH A 12 312 36 HOH HOH . 
J 6 HOH A 13 313 29 HOH HOH . 
J 6 HOH A 14 314 196 HOH HOH . 
J 6 HOH A 15 315 128 HOH HOH . 
J 6 HOH A 16 316 31 HOH HOH . 
J 6 HOH A 17 317 212 HOH HOH . 
J 6 HOH A 18 318 39 HOH HOH . 
J 6 HOH A 19 319 4 HOH HOH . 
J 6 HOH A 20 320 84 HOH HOH . 
J 6 HOH A 21 321 129 HOH HOH . 
J 6 HOH A 22 322 120 HOH HOH . 
J 6 HOH A 23 323 206 HOH HOH . 
J 6 HOH A 24 324 165 HOH HOH . 
J 6 HOH A 25 325 127 HOH HOH . 
J 6 HOH A 26 326 3 HOH HOH . 
J 6 HOH A 27 327 62 HOH HOH . 
J 6 HOH A 28 328 14 HOH HOH . 
J 6 HOH A 29 329 211 HOH HOH . 
J 6 HOH A 30 330 16 HOH HOH . 
J 6 HOH A 31 331 214 HOH HOH . 
J 6 HOH A 32 332 167 HOH HOH . 
J 6 HOH A 33 333 108 HOH HOH . 
J 6 HOH A 34 334 133 HOH HOH . 
J 6 HOH A 35 335 83 HOH HOH . 
J 6 HOH A 36 336 136 HOH HOH . 
J 6 HOH A 37 337 137 HOH HOH . 
J 6 HOH A 38 338 67 HOH HOH . 
J 6 HOH A 39 339 75 HOH HOH . 
J 6 HOH A 40 340 19 HOH HOH . 
J 6 HOH A 41 341 101 HOH HOH . 
J 6 HOH A 42 342 92 HOH HOH . 
J 6 HOH A 43 343 74 HOH HOH . 
J 6 HOH A 44 344 139 HOH HOH . 
J 6 HOH A 45 345 50 HOH HOH . 
J 6 HOH A 46 346 52 HOH HOH . 
J 6 HOH A 47 347 209 HOH HOH . 
J 6 HOH A 48 348 164 HOH HOH . 
J 6 HOH A 49 349 91 HOH HOH . 
J 6 HOH A 50 350 42 HOH HOH . 
J 6 HOH A 51 351 134 HOH HOH . 
J 6 HOH A 52 352 61 HOH HOH . 
J 6 HOH A 53 353 215 HOH HOH . 
J 6 HOH A 54 354 178 HOH HOH . 
J 6 HOH A 55 355 114 HOH HOH . 
J 6 HOH A 56 356 41 HOH HOH . 
J 6 HOH A 57 357 110 HOH HOH . 
J 6 HOH A 58 358 44 HOH HOH . 
J 6 HOH A 59 359 109 HOH HOH . 
J 6 HOH A 60 360 95 HOH HOH . 
J 6 HOH A 61 361 118 HOH HOH . 
J 6 HOH A 62 362 107 HOH HOH . 
J 6 HOH A 63 363 172 HOH HOH . 
J 6 HOH A 64 364 131 HOH HOH . 
K 6 HOH B 1 401 27 HOH HOH . 
K 6 HOH B 2 402 149 HOH HOH . 
K 6 HOH B 3 403 85 HOH HOH . 
K 6 HOH B 4 404 25 HOH HOH . 
K 6 HOH B 5 405 54 HOH HOH . 
K 6 HOH B 6 406 24 HOH HOH . 
K 6 HOH B 7 407 13 HOH HOH . 
K 6 HOH B 8 408 15 HOH HOH . 
K 6 HOH B 9 409 73 HOH HOH . 
K 6 HOH B 10 410 70 HOH HOH . 
K 6 HOH B 11 411 158 HOH HOH . 
K 6 HOH B 12 412 144 HOH HOH . 
K 6 HOH B 13 413 1 HOH HOH . 
K 6 HOH B 14 414 150 HOH HOH . 
K 6 HOH B 15 415 11 HOH HOH . 
K 6 HOH B 16 416 30 HOH HOH . 
K 6 HOH B 17 417 126 HOH HOH . 
K 6 HOH B 18 418 100 HOH HOH . 
K 6 HOH B 19 419 94 HOH HOH . 
K 6 HOH B 20 420 89 HOH HOH . 
K 6 HOH B 21 421 10 HOH HOH . 
K 6 HOH B 22 422 154 HOH HOH . 
K 6 HOH B 23 423 105 HOH HOH . 
K 6 HOH B 24 424 59 HOH HOH . 
K 6 HOH B 25 425 2 HOH HOH . 
K 6 HOH B 26 426 187 HOH HOH . 
K 6 HOH B 27 427 5 HOH HOH . 
K 6 HOH B 28 428 98 HOH HOH . 
K 6 HOH B 29 429 170 HOH HOH . 
K 6 HOH B 30 430 203 HOH HOH . 
K 6 HOH B 31 431 141 HOH HOH . 
K 6 HOH B 32 432 148 HOH HOH . 
K 6 HOH B 33 433 28 HOH HOH . 
K 6 HOH B 34 434 161 HOH HOH . 
K 6 HOH B 35 435 157 HOH HOH . 
K 6 HOH B 36 436 205 HOH HOH . 
K 6 HOH B 37 437 60 HOH HOH . 
K 6 HOH B 38 438 22 HOH HOH . 
K 6 HOH B 39 439 97 HOH HOH . 
K 6 HOH B 40 440 113 HOH HOH . 
K 6 HOH B 41 441 207 HOH HOH . 
K 6 HOH B 42 442 125 HOH HOH . 
K 6 HOH B 43 443 204 HOH HOH . 
K 6 HOH B 44 444 147 HOH HOH . 
K 6 HOH B 45 445 153 HOH HOH . 
K 6 HOH B 46 446 208 HOH HOH . 
K 6 HOH B 47 447 32 HOH HOH . 
K 6 HOH B 48 448 185 HOH HOH . 
K 6 HOH B 49 449 12 HOH HOH . 
K 6 HOH B 50 450 140 HOH HOH . 
K 6 HOH B 51 451 197 HOH HOH . 
K 6 HOH B 52 452 162 HOH HOH . 
K 6 HOH B 53 453 58 HOH HOH . 
K 6 HOH B 54 454 195 HOH HOH . 
K 6 HOH B 55 455 66 HOH HOH . 
K 6 HOH B 56 456 116 HOH HOH . 
K 6 HOH B 57 457 88 HOH HOH . 
K 6 HOH B 58 458 142 HOH HOH . 
K 6 HOH B 59 459 82 HOH HOH . 
K 6 HOH B 60 460 43 HOH HOH . 
K 6 HOH B 61 461 18 HOH HOH . 
K 6 HOH B 62 462 183 HOH HOH . 
K 6 HOH B 63 463 171 HOH HOH . 
K 6 HOH B 64 464 176 HOH HOH . 
K 6 HOH B 65 465 8 HOH HOH . 
K 6 HOH B 66 466 76 HOH HOH . 
K 6 HOH B 67 467 26 HOH HOH . 
K 6 HOH B 68 468 186 HOH HOH . 
K 6 HOH B 69 469 93 HOH HOH . 
K 6 HOH B 70 470 200 HOH HOH . 
K 6 HOH B 71 471 181 HOH HOH . 
K 6 HOH B 72 472 57 HOH HOH . 
K 6 HOH B 73 473 115 HOH HOH . 
K 6 HOH B 74 474 9 HOH HOH . 
K 6 HOH B 75 475 117 HOH HOH . 
K 6 HOH B 76 476 72 HOH HOH . 
K 6 HOH B 77 477 53 HOH HOH . 
K 6 HOH B 78 478 38 HOH HOH . 
K 6 HOH B 79 479 55 HOH HOH . 
K 6 HOH B 80 480 151 HOH HOH . 
K 6 HOH B 81 481 45 HOH HOH . 
K 6 HOH B 82 482 146 HOH HOH . 
K 6 HOH B 83 483 177 HOH HOH . 
K 6 HOH B 84 484 155 HOH HOH . 
K 6 HOH B 85 485 87 HOH HOH . 
K 6 HOH B 86 486 122 HOH HOH . 
K 6 HOH B 87 487 182 HOH HOH . 
K 6 HOH B 88 488 156 HOH HOH . 
K 6 HOH B 89 489 40 HOH HOH . 
K 6 HOH B 90 490 7 HOH HOH . 
K 6 HOH B 91 491 201 HOH HOH . 
K 6 HOH B 92 492 96 HOH HOH . 
K 6 HOH B 93 493 152 HOH HOH . 
K 6 HOH B 94 494 46 HOH HOH . 
K 6 HOH B 95 495 198 HOH HOH . 
K 6 HOH B 96 496 51 HOH HOH . 
K 6 HOH B 97 497 81 HOH HOH . 
K 6 HOH B 98 498 160 HOH HOH . 
K 6 HOH B 99 499 6 HOH HOH . 
K 6 HOH B 100 500 166 HOH HOH . 
K 6 HOH B 101 501 65 HOH HOH . 
K 6 HOH B 102 502 79 HOH HOH . 
K 6 HOH B 103 503 102 HOH HOH . 
K 6 HOH B 104 504 202 HOH HOH . 
K 6 HOH B 105 505 194 HOH HOH . 
K 6 HOH B 106 506 21 HOH HOH . 
K 6 HOH B 107 507 175 HOH HOH . 
K 6 HOH B 108 508 184 HOH HOH . 
K 6 HOH B 109 509 56 HOH HOH . 
K 6 HOH B 110 510 143 HOH HOH . 
K 6 HOH B 111 511 103 HOH HOH . 
K 6 HOH B 112 512 104 HOH HOH . 
K 6 HOH B 113 513 169 HOH HOH . 
K 6 HOH B 114 514 180 HOH HOH . 
K 6 HOH B 115 515 111 HOH HOH . 
K 6 HOH B 116 516 77 HOH HOH . 
K 6 HOH B 117 517 163 HOH HOH . 
K 6 HOH B 118 518 159 HOH HOH . 
K 6 HOH B 119 519 48 HOH HOH . 
K 6 HOH B 120 520 145 HOH HOH . 
K 6 HOH B 121 521 78 HOH HOH . 
K 6 HOH B 122 522 123 HOH HOH . 
K 6 HOH B 123 523 64 HOH HOH . 
K 6 HOH B 124 524 71 HOH HOH . 
K 6 HOH B 125 525 210 HOH HOH . 
K 6 HOH B 126 526 47 HOH HOH . 
K 6 HOH B 127 527 99 HOH HOH . 
K 6 HOH B 128 528 173 HOH HOH . 
K 6 HOH B 129 529 213 HOH HOH . 
L 6 HOH C 1 201 86 HOH HOH . 
L 6 HOH C 2 202 49 HOH HOH . 
L 6 HOH C 3 203 124 HOH HOH . 
L 6 HOH C 4 204 130 HOH HOH . 
L 6 HOH C 5 205 33 HOH HOH . 
L 6 HOH C 6 206 34 HOH HOH . 
L 6 HOH C 7 207 37 HOH HOH . 
L 6 HOH C 8 208 179 HOH HOH . 
L 6 HOH C 9 209 63 HOH HOH . 
L 6 HOH C 10 210 132 HOH HOH . 
L 6 HOH C 11 211 192 HOH HOH . 
L 6 HOH C 12 212 174 HOH HOH . 
L 6 HOH C 13 213 106 HOH HOH . 
L 6 HOH C 14 214 190 HOH HOH . 
L 6 HOH C 15 215 119 HOH HOH . 
L 6 HOH C 16 216 191 HOH HOH . 
L 6 HOH C 17 217 121 HOH HOH . 
L 6 HOH C 18 218 189 HOH HOH . 
L 6 HOH C 19 219 199 HOH HOH . 
L 6 HOH C 20 220 80 HOH HOH . 
L 6 HOH C 21 221 188 HOH HOH . 
L 6 HOH C 22 222 112 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C FMT . . . H 4 21.436 48.471 49.707 1 36.56 ? C FMT 303 B 1 
HETATM 2 O O1 FMT . . . H 4 20.29 48.651 49.349 1 36.02 ? O1 FMT 303 B 1 
HETATM 3 O O2 FMT . . . H 4 21.903 49.405 50.563 1 41.05 ? O2 FMT 303 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           3 
#