data_5J3U # _model_server_result.job_id qAE6NWv60715flASADiM0w _model_server_result.datetime_utc '2024-11-14 17:20:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j3u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 5J3U # _exptl.entry_id 5J3U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5J3U _cell.length_a 36.857 _cell.length_b 59.414 _cell.length_c 120.843 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J3U _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 47 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 191 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 47 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 191 _struct_conn.ptnr2_symmetry 2_565 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.519 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 166 n n C1 C2 GOL sing 167 n n C1 H11 GOL sing 168 n n C1 H12 GOL sing 169 n n O1 HO1 GOL sing 170 n n C2 O2 GOL sing 171 n n C2 C3 GOL sing 172 n n C2 H2 GOL sing 173 n n O2 HO2 GOL sing 174 n n C3 O3 GOL sing 175 n n C3 H31 GOL sing 176 n n C3 H32 GOL sing 177 n n O3 HO3 GOL sing 178 n n # _atom_sites.entry_id 5J3U _atom_sites.fract_transf_matrix[1][1] 0.027132 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016831 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008275 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CMP A 1 501 1 CMP CMP . C 2 CMP A 1 502 2 CMP CMP . D 3 GOL A 1 503 1 GOL GOL . E 3 GOL A 1 504 2 GOL GOL . F 4 HOH A 1 601 268 HOH HOH . F 4 HOH A 2 602 271 HOH HOH . F 4 HOH A 3 603 280 HOH HOH . F 4 HOH A 4 604 88 HOH HOH . F 4 HOH A 5 605 110 HOH HOH . F 4 HOH A 6 606 320 HOH HOH . F 4 HOH A 7 607 186 HOH HOH . F 4 HOH A 8 608 191 HOH HOH . F 4 HOH A 9 609 67 HOH HOH . F 4 HOH A 10 610 294 HOH HOH . F 4 HOH A 11 611 185 HOH HOH . F 4 HOH A 12 612 319 HOH HOH . F 4 HOH A 13 613 75 HOH HOH . F 4 HOH A 14 614 45 HOH HOH . F 4 HOH A 15 615 126 HOH HOH . F 4 HOH A 16 616 261 HOH HOH . F 4 HOH A 17 617 303 HOH HOH . F 4 HOH A 18 618 272 HOH HOH . F 4 HOH A 19 619 140 HOH HOH . F 4 HOH A 20 620 23 HOH HOH . F 4 HOH A 21 621 42 HOH HOH . F 4 HOH A 22 622 74 HOH HOH . F 4 HOH A 23 623 305 HOH HOH . F 4 HOH A 24 624 304 HOH HOH . F 4 HOH A 25 625 22 HOH HOH . F 4 HOH A 26 626 144 HOH HOH . F 4 HOH A 27 627 130 HOH HOH . F 4 HOH A 28 628 214 HOH HOH . F 4 HOH A 29 629 81 HOH HOH . F 4 HOH A 30 630 256 HOH HOH . F 4 HOH A 31 631 218 HOH HOH . F 4 HOH A 32 632 157 HOH HOH . F 4 HOH A 33 633 65 HOH HOH . F 4 HOH A 34 634 101 HOH HOH . F 4 HOH A 35 635 113 HOH HOH . F 4 HOH A 36 636 83 HOH HOH . F 4 HOH A 37 637 309 HOH HOH . F 4 HOH A 38 638 262 HOH HOH . F 4 HOH A 39 639 31 HOH HOH . F 4 HOH A 40 640 99 HOH HOH . F 4 HOH A 41 641 247 HOH HOH . F 4 HOH A 42 642 246 HOH HOH . F 4 HOH A 43 643 106 HOH HOH . F 4 HOH A 44 644 35 HOH HOH . F 4 HOH A 45 645 142 HOH HOH . F 4 HOH A 46 646 209 HOH HOH . F 4 HOH A 47 647 300 HOH HOH . F 4 HOH A 48 648 17 HOH HOH . F 4 HOH A 49 649 240 HOH HOH . F 4 HOH A 50 650 313 HOH HOH . F 4 HOH A 51 651 289 HOH HOH . F 4 HOH A 52 652 90 HOH HOH . F 4 HOH A 53 653 244 HOH HOH . F 4 HOH A 54 654 314 HOH HOH . F 4 HOH A 55 655 5 HOH HOH . F 4 HOH A 56 656 281 HOH HOH . F 4 HOH A 57 657 3 HOH HOH . F 4 HOH A 58 658 138 HOH HOH . F 4 HOH A 59 659 159 HOH HOH . F 4 HOH A 60 660 210 HOH HOH . F 4 HOH A 61 661 62 HOH HOH . F 4 HOH A 62 662 47 HOH HOH . F 4 HOH A 63 663 95 HOH HOH . F 4 HOH A 64 664 226 HOH HOH . F 4 HOH A 65 665 11 HOH HOH . F 4 HOH A 66 666 234 HOH HOH . F 4 HOH A 67 667 39 HOH HOH . F 4 HOH A 68 668 112 HOH HOH . F 4 HOH A 69 669 26 HOH HOH . F 4 HOH A 70 670 155 HOH HOH . F 4 HOH A 71 671 85 HOH HOH . F 4 HOH A 72 672 263 HOH HOH . F 4 HOH A 73 673 25 HOH HOH . F 4 HOH A 74 674 172 HOH HOH . F 4 HOH A 75 675 199 HOH HOH . F 4 HOH A 76 676 128 HOH HOH . F 4 HOH A 77 677 14 HOH HOH . F 4 HOH A 78 678 68 HOH HOH . F 4 HOH A 79 679 286 HOH HOH . F 4 HOH A 80 680 301 HOH HOH . F 4 HOH A 81 681 86 HOH HOH . F 4 HOH A 82 682 316 HOH HOH . F 4 HOH A 83 683 233 HOH HOH . F 4 HOH A 84 684 174 HOH HOH . F 4 HOH A 85 685 270 HOH HOH . F 4 HOH A 86 686 8 HOH HOH . F 4 HOH A 87 687 57 HOH HOH . F 4 HOH A 88 688 70 HOH HOH . F 4 HOH A 89 689 164 HOH HOH . F 4 HOH A 90 690 56 HOH HOH . F 4 HOH A 91 691 189 HOH HOH . F 4 HOH A 92 692 82 HOH HOH . F 4 HOH A 93 693 60 HOH HOH . F 4 HOH A 94 694 237 HOH HOH . F 4 HOH A 95 695 225 HOH HOH . F 4 HOH A 96 696 50 HOH HOH . F 4 HOH A 97 697 290 HOH HOH . F 4 HOH A 98 698 7 HOH HOH . F 4 HOH A 99 699 324 HOH HOH . F 4 HOH A 100 700 221 HOH HOH . F 4 HOH A 101 701 9 HOH HOH . F 4 HOH A 102 702 288 HOH HOH . F 4 HOH A 103 703 61 HOH HOH . F 4 HOH A 104 704 12 HOH HOH . F 4 HOH A 105 705 143 HOH HOH . F 4 HOH A 106 706 111 HOH HOH . F 4 HOH A 107 707 51 HOH HOH . F 4 HOH A 108 708 195 HOH HOH . F 4 HOH A 109 709 24 HOH HOH . F 4 HOH A 110 710 15 HOH HOH . F 4 HOH A 111 711 1 HOH HOH . F 4 HOH A 112 712 197 HOH HOH . F 4 HOH A 113 713 18 HOH HOH . F 4 HOH A 114 714 19 HOH HOH . F 4 HOH A 115 715 154 HOH HOH . F 4 HOH A 116 716 249 HOH HOH . F 4 HOH A 117 717 293 HOH HOH . F 4 HOH A 118 718 188 HOH HOH . F 4 HOH A 119 719 163 HOH HOH . F 4 HOH A 120 720 104 HOH HOH . F 4 HOH A 121 721 241 HOH HOH . F 4 HOH A 122 722 80 HOH HOH . F 4 HOH A 123 723 72 HOH HOH . F 4 HOH A 124 724 20 HOH HOH . F 4 HOH A 125 725 6 HOH HOH . F 4 HOH A 126 726 4 HOH HOH . F 4 HOH A 127 727 283 HOH HOH . F 4 HOH A 128 728 2 HOH HOH . F 4 HOH A 129 729 183 HOH HOH . F 4 HOH A 130 730 178 HOH HOH . F 4 HOH A 131 731 64 HOH HOH . F 4 HOH A 132 732 264 HOH HOH . F 4 HOH A 133 733 190 HOH HOH . F 4 HOH A 134 734 32 HOH HOH . F 4 HOH A 135 735 21 HOH HOH . F 4 HOH A 136 736 55 HOH HOH . F 4 HOH A 137 737 40 HOH HOH . F 4 HOH A 138 738 109 HOH HOH . F 4 HOH A 139 739 297 HOH HOH . F 4 HOH A 140 740 167 HOH HOH . F 4 HOH A 141 741 165 HOH HOH . F 4 HOH A 142 742 118 HOH HOH . F 4 HOH A 143 743 265 HOH HOH . F 4 HOH A 144 744 146 HOH HOH . F 4 HOH A 145 745 273 HOH HOH . F 4 HOH A 146 746 285 HOH HOH . F 4 HOH A 147 747 306 HOH HOH . F 4 HOH A 148 748 259 HOH HOH . F 4 HOH A 149 749 97 HOH HOH . F 4 HOH A 150 750 92 HOH HOH . F 4 HOH A 151 751 222 HOH HOH . F 4 HOH A 152 752 147 HOH HOH . F 4 HOH A 153 753 115 HOH HOH . F 4 HOH A 154 754 275 HOH HOH . F 4 HOH A 155 755 27 HOH HOH . F 4 HOH A 156 756 251 HOH HOH . F 4 HOH A 157 757 44 HOH HOH . F 4 HOH A 158 758 38 HOH HOH . F 4 HOH A 159 759 151 HOH HOH . F 4 HOH A 160 760 129 HOH HOH . F 4 HOH A 161 761 120 HOH HOH . F 4 HOH A 162 762 69 HOH HOH . F 4 HOH A 163 763 10 HOH HOH . F 4 HOH A 164 764 254 HOH HOH . F 4 HOH A 165 765 119 HOH HOH . F 4 HOH A 166 766 279 HOH HOH . F 4 HOH A 167 767 291 HOH HOH . F 4 HOH A 168 768 217 HOH HOH . F 4 HOH A 169 769 180 HOH HOH . F 4 HOH A 170 770 30 HOH HOH . F 4 HOH A 171 771 16 HOH HOH . F 4 HOH A 172 772 317 HOH HOH . F 4 HOH A 173 773 235 HOH HOH . F 4 HOH A 174 774 321 HOH HOH . F 4 HOH A 175 775 153 HOH HOH . F 4 HOH A 176 776 71 HOH HOH . F 4 HOH A 177 777 33 HOH HOH . F 4 HOH A 178 778 87 HOH HOH . F 4 HOH A 179 779 48 HOH HOH . F 4 HOH A 180 780 298 HOH HOH . F 4 HOH A 181 781 152 HOH HOH . F 4 HOH A 182 782 203 HOH HOH . F 4 HOH A 183 783 135 HOH HOH . F 4 HOH A 184 784 145 HOH HOH . F 4 HOH A 185 785 123 HOH HOH . F 4 HOH A 186 786 54 HOH HOH . F 4 HOH A 187 787 323 HOH HOH . F 4 HOH A 188 788 266 HOH HOH . F 4 HOH A 189 789 215 HOH HOH . F 4 HOH A 190 790 216 HOH HOH . F 4 HOH A 191 791 232 HOH HOH . F 4 HOH A 192 792 73 HOH HOH . F 4 HOH A 193 793 161 HOH HOH . F 4 HOH A 194 794 252 HOH HOH . F 4 HOH A 195 795 311 HOH HOH . F 4 HOH A 196 796 46 HOH HOH . F 4 HOH A 197 797 93 HOH HOH . F 4 HOH A 198 798 139 HOH HOH . F 4 HOH A 199 799 29 HOH HOH . F 4 HOH A 200 800 149 HOH HOH . F 4 HOH A 201 801 77 HOH HOH . F 4 HOH A 202 802 223 HOH HOH . F 4 HOH A 203 803 307 HOH HOH . F 4 HOH A 204 804 66 HOH HOH . F 4 HOH A 205 805 59 HOH HOH . F 4 HOH A 206 806 125 HOH HOH . F 4 HOH A 207 807 107 HOH HOH . F 4 HOH A 208 808 150 HOH HOH . F 4 HOH A 209 809 310 HOH HOH . F 4 HOH A 210 810 13 HOH HOH . F 4 HOH A 211 811 299 HOH HOH . F 4 HOH A 212 812 192 HOH HOH . F 4 HOH A 213 813 84 HOH HOH . F 4 HOH A 214 814 58 HOH HOH . F 4 HOH A 215 815 34 HOH HOH . F 4 HOH A 216 816 116 HOH HOH . F 4 HOH A 217 817 260 HOH HOH . F 4 HOH A 218 818 37 HOH HOH . F 4 HOH A 219 819 141 HOH HOH . F 4 HOH A 220 820 117 HOH HOH . F 4 HOH A 221 821 318 HOH HOH . F 4 HOH A 222 822 49 HOH HOH . F 4 HOH A 223 823 227 HOH HOH . F 4 HOH A 224 824 200 HOH HOH . F 4 HOH A 225 825 312 HOH HOH . F 4 HOH A 226 826 137 HOH HOH . F 4 HOH A 227 827 207 HOH HOH . F 4 HOH A 228 828 278 HOH HOH . F 4 HOH A 229 829 28 HOH HOH . F 4 HOH A 230 830 194 HOH HOH . F 4 HOH A 231 831 267 HOH HOH . F 4 HOH A 232 832 133 HOH HOH . F 4 HOH A 233 833 250 HOH HOH . F 4 HOH A 234 834 131 HOH HOH . F 4 HOH A 235 835 296 HOH HOH . F 4 HOH A 236 836 292 HOH HOH . F 4 HOH A 237 837 242 HOH HOH . F 4 HOH A 238 838 127 HOH HOH . F 4 HOH A 239 839 136 HOH HOH . F 4 HOH A 240 840 295 HOH HOH . F 4 HOH A 241 841 166 HOH HOH . F 4 HOH A 242 842 236 HOH HOH . F 4 HOH A 243 843 168 HOH HOH . F 4 HOH A 244 844 274 HOH HOH . F 4 HOH A 245 845 78 HOH HOH . F 4 HOH A 246 846 224 HOH HOH . F 4 HOH A 247 847 181 HOH HOH . F 4 HOH A 248 848 170 HOH HOH . F 4 HOH A 249 849 198 HOH HOH . F 4 HOH A 250 850 308 HOH HOH . F 4 HOH A 251 851 187 HOH HOH . F 4 HOH A 252 852 204 HOH HOH . F 4 HOH A 253 853 277 HOH HOH . F 4 HOH A 254 854 91 HOH HOH . F 4 HOH A 255 855 114 HOH HOH . F 4 HOH A 256 856 100 HOH HOH . F 4 HOH A 257 857 162 HOH HOH . F 4 HOH A 258 858 193 HOH HOH . F 4 HOH A 259 859 134 HOH HOH . F 4 HOH A 260 860 206 HOH HOH . F 4 HOH A 261 861 108 HOH HOH . F 4 HOH A 262 862 182 HOH HOH . F 4 HOH A 263 863 228 HOH HOH . F 4 HOH A 264 864 269 HOH HOH . F 4 HOH A 265 865 98 HOH HOH . F 4 HOH A 266 866 121 HOH HOH . F 4 HOH A 267 867 171 HOH HOH . F 4 HOH A 268 868 122 HOH HOH . F 4 HOH A 269 869 231 HOH HOH . F 4 HOH A 270 870 175 HOH HOH . F 4 HOH A 271 871 124 HOH HOH . F 4 HOH A 272 872 322 HOH HOH . F 4 HOH A 273 873 284 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 30.619 69.326 25.761 1 30.43 ? C1 GOL 503 A 1 HETATM 2 O O1 GOL . . . D 3 30.261 68.762 27.037 1 27.91 ? O1 GOL 503 A 1 HETATM 3 C C2 GOL . . . D 3 32.108 69.103 25.54 1 33.63 ? C2 GOL 503 A 1 HETATM 4 O O2 GOL . . . D 3 32.44 67.757 25.931 1 31.56 ? O2 GOL 503 A 1 HETATM 5 C C3 GOL . . . D 3 32.47 69.292 24.087 1 32.68 ? C3 GOL 503 A 1 HETATM 6 O O3 GOL . . . D 3 33.875 69.084 24.013 1 36.24 ? O3 GOL 503 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #