data_5J4K
#
_model_server_result.job_id            n9w4LvCZV42wEw_eq-Z_SQ 
_model_server_result.datetime_utc      '2024-10-10 01:14:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5j4k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5J4K 
#
_exptl.entry_id    5J4K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5J4K 
_cell.length_a            40.44 
_cell.length_b            61.214 
_cell.length_c            87.742 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5J4K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLN 25 A GLN 131 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc2 A OD1 ASN 93 A ASN 199 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? 
metalc ? metalc3 A OD1 ASN 167 A ASN 273 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? 
metalc ? metalc4 B NA NA . A NA 401 1_555 G O HOH . A HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? 
metalc ? metalc5 B NA NA . A NA 401 1_555 G O HOH . A HOH 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? 
metalc ? metalc6 B NA NA . A NA 401 1_555 G O HOH . A HOH 680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc7 B NA NA . A NA 401 1_555 G O HOH . A HOH 695 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? 
metalc ? metalc8 B NA NA . A NA 401 1_555 G O HOH . A HOH 729 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? 
metalc ? metalc9 B NA NA . A NA 401 1_555 G O HOH . A HOH 737 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc10 C NA NA . A NA 402 1_555 G O HOH . A HOH 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc11 C NA NA . A NA 402 1_555 G O HOH . A HOH 563 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc12 C NA NA . A NA 402 1_555 G O HOH . A HOH 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
metalc ? metalc13 D CA CA . A CA 403 1_555 G O HOH . A HOH 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? 
metalc ? metalc14 D CA CA . A CA 403 1_555 G O HOH . A HOH 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.089 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5J4K 
_atom_sites.fract_transf_matrix[1][1]    0.024728 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016336 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011397 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 401 1 NA NA . 
C 2 NA A 1 402 2 NA NA . 
D 3 CA A 1 403 1 CA CA . 
E 4 6FZ A 1 404 4000 6FZ 802 . 
F 5 GOL A 1 405 1 GOL GOL . 
G 6 HOH A 1 501 243 HOH HOH . 
G 6 HOH A 2 502 232 HOH HOH . 
G 6 HOH A 3 503 228 HOH HOH . 
G 6 HOH A 4 504 223 HOH HOH . 
G 6 HOH A 5 505 226 HOH HOH . 
G 6 HOH A 6 506 234 HOH HOH . 
G 6 HOH A 7 507 210 HOH HOH . 
G 6 HOH A 8 508 255 HOH HOH . 
G 6 HOH A 9 509 33 HOH HOH . 
G 6 HOH A 10 510 197 HOH HOH . 
G 6 HOH A 11 511 144 HOH HOH . 
G 6 HOH A 12 512 246 HOH HOH . 
G 6 HOH A 13 513 58 HOH HOH . 
G 6 HOH A 14 514 250 HOH HOH . 
G 6 HOH A 15 515 170 HOH HOH . 
G 6 HOH A 16 516 67 HOH HOH . 
G 6 HOH A 17 517 196 HOH HOH . 
G 6 HOH A 18 518 125 HOH HOH . 
G 6 HOH A 19 519 121 HOH HOH . 
G 6 HOH A 20 520 26 HOH HOH . 
G 6 HOH A 21 521 218 HOH HOH . 
G 6 HOH A 22 522 237 HOH HOH . 
G 6 HOH A 23 523 25 HOH HOH . 
G 6 HOH A 24 524 146 HOH HOH . 
G 6 HOH A 25 525 69 HOH HOH . 
G 6 HOH A 26 526 7 HOH HOH . 
G 6 HOH A 27 527 136 HOH HOH . 
G 6 HOH A 28 528 186 HOH HOH . 
G 6 HOH A 29 529 35 HOH HOH . 
G 6 HOH A 30 530 168 HOH HOH . 
G 6 HOH A 31 531 211 HOH HOH . 
G 6 HOH A 32 532 156 HOH HOH . 
G 6 HOH A 33 533 81 HOH HOH . 
G 6 HOH A 34 534 132 HOH HOH . 
G 6 HOH A 35 535 18 HOH HOH . 
G 6 HOH A 36 536 140 HOH HOH . 
G 6 HOH A 37 537 207 HOH HOH . 
G 6 HOH A 38 538 137 HOH HOH . 
G 6 HOH A 39 539 178 HOH HOH . 
G 6 HOH A 40 540 111 HOH HOH . 
G 6 HOH A 41 541 94 HOH HOH . 
G 6 HOH A 42 542 89 HOH HOH . 
G 6 HOH A 43 543 4 HOH HOH . 
G 6 HOH A 44 544 202 HOH HOH . 
G 6 HOH A 45 545 127 HOH HOH . 
G 6 HOH A 46 546 122 HOH HOH . 
G 6 HOH A 47 547 176 HOH HOH . 
G 6 HOH A 48 548 239 HOH HOH . 
G 6 HOH A 49 549 128 HOH HOH . 
G 6 HOH A 50 550 240 HOH HOH . 
G 6 HOH A 51 551 187 HOH HOH . 
G 6 HOH A 52 552 188 HOH HOH . 
G 6 HOH A 53 553 135 HOH HOH . 
G 6 HOH A 54 554 6 HOH HOH . 
G 6 HOH A 55 555 117 HOH HOH . 
G 6 HOH A 56 556 142 HOH HOH . 
G 6 HOH A 57 557 2 HOH HOH . 
G 6 HOH A 58 558 34 HOH HOH . 
G 6 HOH A 59 559 12 HOH HOH . 
G 6 HOH A 60 560 163 HOH HOH . 
G 6 HOH A 61 561 199 HOH HOH . 
G 6 HOH A 62 562 45 HOH HOH . 
G 6 HOH A 63 563 183 HOH HOH . 
G 6 HOH A 64 564 227 HOH HOH . 
G 6 HOH A 65 565 149 HOH HOH . 
G 6 HOH A 66 566 164 HOH HOH . 
G 6 HOH A 67 567 15 HOH HOH . 
G 6 HOH A 68 568 124 HOH HOH . 
G 6 HOH A 69 569 65 HOH HOH . 
G 6 HOH A 70 570 106 HOH HOH . 
G 6 HOH A 71 571 74 HOH HOH . 
G 6 HOH A 72 572 155 HOH HOH . 
G 6 HOH A 73 573 194 HOH HOH . 
G 6 HOH A 74 574 133 HOH HOH . 
G 6 HOH A 75 575 30 HOH HOH . 
G 6 HOH A 76 576 51 HOH HOH . 
G 6 HOH A 77 577 13 HOH HOH . 
G 6 HOH A 78 578 16 HOH HOH . 
G 6 HOH A 79 579 56 HOH HOH . 
G 6 HOH A 80 580 193 HOH HOH . 
G 6 HOH A 81 581 11 HOH HOH . 
G 6 HOH A 82 582 120 HOH HOH . 
G 6 HOH A 83 583 129 HOH HOH . 
G 6 HOH A 84 584 43 HOH HOH . 
G 6 HOH A 85 585 57 HOH HOH . 
G 6 HOH A 86 586 38 HOH HOH . 
G 6 HOH A 87 587 47 HOH HOH . 
G 6 HOH A 88 588 126 HOH HOH . 
G 6 HOH A 89 589 160 HOH HOH . 
G 6 HOH A 90 590 214 HOH HOH . 
G 6 HOH A 91 591 180 HOH HOH . 
G 6 HOH A 92 592 41 HOH HOH . 
G 6 HOH A 93 593 219 HOH HOH . 
G 6 HOH A 94 594 3 HOH HOH . 
G 6 HOH A 95 595 24 HOH HOH . 
G 6 HOH A 96 596 203 HOH HOH . 
G 6 HOH A 97 597 9 HOH HOH . 
G 6 HOH A 98 598 92 HOH HOH . 
G 6 HOH A 99 599 5 HOH HOH . 
G 6 HOH A 100 600 73 HOH HOH . 
G 6 HOH A 101 601 39 HOH HOH . 
G 6 HOH A 102 602 154 HOH HOH . 
G 6 HOH A 103 603 159 HOH HOH . 
G 6 HOH A 104 604 171 HOH HOH . 
G 6 HOH A 105 605 29 HOH HOH . 
G 6 HOH A 106 606 151 HOH HOH . 
G 6 HOH A 107 607 174 HOH HOH . 
G 6 HOH A 108 608 181 HOH HOH . 
G 6 HOH A 109 609 138 HOH HOH . 
G 6 HOH A 110 610 169 HOH HOH . 
G 6 HOH A 111 611 61 HOH HOH . 
G 6 HOH A 112 612 185 HOH HOH . 
G 6 HOH A 113 613 79 HOH HOH . 
G 6 HOH A 114 614 76 HOH HOH . 
G 6 HOH A 115 615 208 HOH HOH . 
G 6 HOH A 116 616 253 HOH HOH . 
G 6 HOH A 117 617 1 HOH HOH . 
G 6 HOH A 118 618 245 HOH HOH . 
G 6 HOH A 119 619 40 HOH HOH . 
G 6 HOH A 120 620 242 HOH HOH . 
G 6 HOH A 121 621 141 HOH HOH . 
G 6 HOH A 122 622 130 HOH HOH . 
G 6 HOH A 123 623 198 HOH HOH . 
G 6 HOH A 124 624 165 HOH HOH . 
G 6 HOH A 125 625 44 HOH HOH . 
G 6 HOH A 126 626 22 HOH HOH . 
G 6 HOH A 127 627 55 HOH HOH . 
G 6 HOH A 128 628 225 HOH HOH . 
G 6 HOH A 129 629 114 HOH HOH . 
G 6 HOH A 130 630 175 HOH HOH . 
G 6 HOH A 131 631 153 HOH HOH . 
G 6 HOH A 132 632 235 HOH HOH . 
G 6 HOH A 133 633 60 HOH HOH . 
G 6 HOH A 134 634 195 HOH HOH . 
G 6 HOH A 135 635 249 HOH HOH . 
G 6 HOH A 136 636 53 HOH HOH . 
G 6 HOH A 137 637 118 HOH HOH . 
G 6 HOH A 138 638 54 HOH HOH . 
G 6 HOH A 139 639 116 HOH HOH . 
G 6 HOH A 140 640 31 HOH HOH . 
G 6 HOH A 141 641 238 HOH HOH . 
G 6 HOH A 142 642 215 HOH HOH . 
G 6 HOH A 143 643 10 HOH HOH . 
G 6 HOH A 144 644 143 HOH HOH . 
G 6 HOH A 145 645 167 HOH HOH . 
G 6 HOH A 146 646 244 HOH HOH . 
G 6 HOH A 147 647 209 HOH HOH . 
G 6 HOH A 148 648 152 HOH HOH . 
G 6 HOH A 149 649 27 HOH HOH . 
G 6 HOH A 150 650 179 HOH HOH . 
G 6 HOH A 151 651 139 HOH HOH . 
G 6 HOH A 152 652 96 HOH HOH . 
G 6 HOH A 153 653 134 HOH HOH . 
G 6 HOH A 154 654 173 HOH HOH . 
G 6 HOH A 155 655 119 HOH HOH . 
G 6 HOH A 156 656 217 HOH HOH . 
G 6 HOH A 157 657 247 HOH HOH . 
G 6 HOH A 158 658 262 HOH HOH . 
G 6 HOH A 159 659 190 HOH HOH . 
G 6 HOH A 160 660 49 HOH HOH . 
G 6 HOH A 161 661 148 HOH HOH . 
G 6 HOH A 162 662 216 HOH HOH . 
G 6 HOH A 163 663 145 HOH HOH . 
G 6 HOH A 164 664 161 HOH HOH . 
G 6 HOH A 165 665 147 HOH HOH . 
G 6 HOH A 166 666 115 HOH HOH . 
G 6 HOH A 167 667 17 HOH HOH . 
G 6 HOH A 168 668 212 HOH HOH . 
G 6 HOH A 169 669 177 HOH HOH . 
G 6 HOH A 170 670 131 HOH HOH . 
G 6 HOH A 171 671 87 HOH HOH . 
G 6 HOH A 172 672 90 HOH HOH . 
G 6 HOH A 173 673 222 HOH HOH . 
G 6 HOH A 174 674 157 HOH HOH . 
G 6 HOH A 175 675 191 HOH HOH . 
G 6 HOH A 176 676 86 HOH HOH . 
G 6 HOH A 177 677 104 HOH HOH . 
G 6 HOH A 178 678 236 HOH HOH . 
G 6 HOH A 179 679 206 HOH HOH . 
G 6 HOH A 180 680 213 HOH HOH . 
G 6 HOH A 181 681 150 HOH HOH . 
G 6 HOH A 182 682 184 HOH HOH . 
G 6 HOH A 183 683 162 HOH HOH . 
G 6 HOH A 184 684 241 HOH HOH . 
G 6 HOH A 185 685 23 HOH HOH . 
G 6 HOH A 186 686 82 HOH HOH . 
G 6 HOH A 187 687 123 HOH HOH . 
G 6 HOH A 188 688 75 HOH HOH . 
G 6 HOH A 189 689 52 HOH HOH . 
G 6 HOH A 190 690 42 HOH HOH . 
G 6 HOH A 191 691 201 HOH HOH . 
G 6 HOH A 192 692 224 HOH HOH . 
G 6 HOH A 193 693 109 HOH HOH . 
G 6 HOH A 194 694 166 HOH HOH . 
G 6 HOH A 195 695 252 HOH HOH . 
G 6 HOH A 196 696 248 HOH HOH . 
G 6 HOH A 197 697 21 HOH HOH . 
G 6 HOH A 198 698 46 HOH HOH . 
G 6 HOH A 199 699 108 HOH HOH . 
G 6 HOH A 200 700 257 HOH HOH . 
G 6 HOH A 201 701 205 HOH HOH . 
G 6 HOH A 202 702 220 HOH HOH . 
G 6 HOH A 203 703 66 HOH HOH . 
G 6 HOH A 204 704 229 HOH HOH . 
G 6 HOH A 205 705 110 HOH HOH . 
G 6 HOH A 206 706 260 HOH HOH . 
G 6 HOH A 207 707 78 HOH HOH . 
G 6 HOH A 208 708 68 HOH HOH . 
G 6 HOH A 209 709 95 HOH HOH . 
G 6 HOH A 210 710 189 HOH HOH . 
G 6 HOH A 211 711 14 HOH HOH . 
G 6 HOH A 212 712 77 HOH HOH . 
G 6 HOH A 213 713 233 HOH HOH . 
G 6 HOH A 214 714 59 HOH HOH . 
G 6 HOH A 215 715 204 HOH HOH . 
G 6 HOH A 216 716 263 HOH HOH . 
G 6 HOH A 217 717 48 HOH HOH . 
G 6 HOH A 218 718 19 HOH HOH . 
G 6 HOH A 219 719 32 HOH HOH . 
G 6 HOH A 220 720 97 HOH HOH . 
G 6 HOH A 221 721 72 HOH HOH . 
G 6 HOH A 222 722 261 HOH HOH . 
G 6 HOH A 223 723 36 HOH HOH . 
G 6 HOH A 224 724 70 HOH HOH . 
G 6 HOH A 225 725 71 HOH HOH . 
G 6 HOH A 226 726 84 HOH HOH . 
G 6 HOH A 227 727 63 HOH HOH . 
G 6 HOH A 228 728 83 HOH HOH . 
G 6 HOH A 229 729 251 HOH HOH . 
G 6 HOH A 230 730 85 HOH HOH . 
G 6 HOH A 231 731 259 HOH HOH . 
G 6 HOH A 232 732 50 HOH HOH . 
G 6 HOH A 233 733 80 HOH HOH . 
G 6 HOH A 234 734 172 HOH HOH . 
G 6 HOH A 235 735 113 HOH HOH . 
G 6 HOH A 236 736 221 HOH HOH . 
G 6 HOH A 237 737 258 HOH HOH . 
G 6 HOH A 238 738 98 HOH HOH . 
G 6 HOH A 239 739 64 HOH HOH . 
G 6 HOH A 240 740 62 HOH HOH . 
G 6 HOH A 241 741 231 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               18.77 
_atom_site.Cartn_y               -4.006 
_atom_site.Cartn_z               52.108 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        23.73 
_atom_site.pdbx_formal_charge    1 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           401 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#