data_5J4Y # _model_server_result.job_id 4mMzSdHs2AnK8heTYclgJg _model_server_result.datetime_utc '2024-11-15 13:31:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j4y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":702}' # _entry.id 5J4Y # _exptl.entry_id 5J4Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5J4Y _cell.length_a 109.25 _cell.length_b 109.25 _cell.length_c 66.67 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J4Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 y,-x+y,z 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 0 6 'crystal symmetry operation' 6_555 x-y,x,z 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 50 A CYS 306 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc2 A NE2 HIS 58 A HIS 314 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc3 A ND1 HIS 62 A HIS 318 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 262 n n O1 C6 MES sing 263 n n C2 C3 MES sing 264 n n C2 H21 MES sing 265 n n C2 H22 MES sing 266 n n C3 N4 MES sing 267 n n C3 H31 MES sing 268 n n C3 H32 MES sing 269 n n N4 C5 MES sing 270 n n N4 C7 MES sing 271 n n N4 HN4 MES sing 272 n n C5 C6 MES sing 273 n n C5 H51 MES sing 274 n n C5 H52 MES sing 275 n n C6 H61 MES sing 276 n n C6 H62 MES sing 277 n n C7 C8 MES sing 278 n n C7 H71 MES sing 279 n n C7 H72 MES sing 280 n n C8 S MES sing 281 n n C8 H81 MES sing 282 n n C8 H82 MES sing 283 n n S O1S MES doub 284 n n S O2S MES doub 285 n n S O3S MES sing 286 n n # _atom_sites.entry_id 5J4Y _atom_sites.fract_transf_matrix[1][1] 0.009153 _atom_sites.fract_transf_matrix[1][2] 0.005285 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010569 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014999 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 701 1 ZN ZN . C 3 MES A 1 702 1 MES MES . D 4 SO4 A 1 703 1 SO4 SO4 . E 4 SO4 A 1 704 2 SO4 SO4 . F 5 6JG A 1 705 4000 6JG XXX . G 6 HOH A 1 801 92 HOH HOH . G 6 HOH A 2 802 78 HOH HOH . G 6 HOH A 3 803 69 HOH HOH . G 6 HOH A 4 804 68 HOH HOH . G 6 HOH A 5 805 3 HOH HOH . G 6 HOH A 6 806 13 HOH HOH . G 6 HOH A 7 807 91 HOH HOH . G 6 HOH A 8 808 28 HOH HOH . G 6 HOH A 9 809 93 HOH HOH . G 6 HOH A 10 810 40 HOH HOH . G 6 HOH A 11 811 52 HOH HOH . G 6 HOH A 12 812 36 HOH HOH . G 6 HOH A 13 813 72 HOH HOH . G 6 HOH A 14 814 7 HOH HOH . G 6 HOH A 15 815 2 HOH HOH . G 6 HOH A 16 816 16 HOH HOH . G 6 HOH A 17 817 23 HOH HOH . G 6 HOH A 18 818 61 HOH HOH . G 6 HOH A 19 819 76 HOH HOH . G 6 HOH A 20 820 83 HOH HOH . G 6 HOH A 21 821 31 HOH HOH . G 6 HOH A 22 822 82 HOH HOH . G 6 HOH A 23 823 26 HOH HOH . G 6 HOH A 24 824 66 HOH HOH . G 6 HOH A 25 825 12 HOH HOH . G 6 HOH A 26 826 38 HOH HOH . G 6 HOH A 27 827 70 HOH HOH . G 6 HOH A 28 828 43 HOH HOH . G 6 HOH A 29 829 15 HOH HOH . G 6 HOH A 30 830 5 HOH HOH . G 6 HOH A 31 831 21 HOH HOH . G 6 HOH A 32 832 25 HOH HOH . G 6 HOH A 33 833 9 HOH HOH . G 6 HOH A 34 834 20 HOH HOH . G 6 HOH A 35 835 48 HOH HOH . G 6 HOH A 36 836 14 HOH HOH . G 6 HOH A 37 837 8 HOH HOH . G 6 HOH A 38 838 29 HOH HOH . G 6 HOH A 39 839 90 HOH HOH . G 6 HOH A 40 840 50 HOH HOH . G 6 HOH A 41 841 81 HOH HOH . G 6 HOH A 42 842 19 HOH HOH . G 6 HOH A 43 843 89 HOH HOH . G 6 HOH A 44 844 57 HOH HOH . G 6 HOH A 45 845 24 HOH HOH . G 6 HOH A 46 846 41 HOH HOH . G 6 HOH A 47 847 34 HOH HOH . G 6 HOH A 48 848 45 HOH HOH . G 6 HOH A 49 849 67 HOH HOH . G 6 HOH A 50 850 17 HOH HOH . G 6 HOH A 51 851 75 HOH HOH . G 6 HOH A 52 852 27 HOH HOH . G 6 HOH A 53 853 33 HOH HOH . G 6 HOH A 54 854 88 HOH HOH . G 6 HOH A 55 855 42 HOH HOH . G 6 HOH A 56 856 46 HOH HOH . G 6 HOH A 57 857 59 HOH HOH . G 6 HOH A 58 858 35 HOH HOH . G 6 HOH A 59 859 6 HOH HOH . G 6 HOH A 60 860 87 HOH HOH . G 6 HOH A 61 861 18 HOH HOH . G 6 HOH A 62 862 85 HOH HOH . G 6 HOH A 63 863 84 HOH HOH . G 6 HOH A 64 864 65 HOH HOH . G 6 HOH A 65 865 80 HOH HOH . G 6 HOH A 66 866 56 HOH HOH . G 6 HOH A 67 867 47 HOH HOH . G 6 HOH A 68 868 71 HOH HOH . G 6 HOH A 69 869 11 HOH HOH . G 6 HOH A 70 870 74 HOH HOH . G 6 HOH A 71 871 63 HOH HOH . G 6 HOH A 72 872 62 HOH HOH . G 6 HOH A 73 873 1 HOH HOH . G 6 HOH A 74 874 77 HOH HOH . G 6 HOH A 75 875 10 HOH HOH . G 6 HOH A 76 876 60 HOH HOH . G 6 HOH A 77 877 53 HOH HOH . G 6 HOH A 78 878 73 HOH HOH . G 6 HOH A 79 879 22 HOH HOH . G 6 HOH A 80 880 58 HOH HOH . G 6 HOH A 81 881 86 HOH HOH . G 6 HOH A 82 882 32 HOH HOH . G 6 HOH A 83 883 49 HOH HOH . G 6 HOH A 84 884 39 HOH HOH . G 6 HOH A 85 885 64 HOH HOH . G 6 HOH A 86 886 55 HOH HOH . G 6 HOH A 87 887 51 HOH HOH . G 6 HOH A 88 888 79 HOH HOH . G 6 HOH A 89 889 54 HOH HOH . G 6 HOH A 90 890 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . C 3 -48.593 28.268 4.328 1 67.38 ? O1 MES 702 A 1 HETATM 2 C C2 MES . . . C 3 -49.487 29.376 4.277 1 71.6 ? C2 MES 702 A 1 HETATM 3 C C3 MES . . . C 3 -50.837 29.044 4.883 1 71.88 ? C3 MES 702 A 1 HETATM 4 N N4 MES . . . C 3 -50.688 28.544 6.27 1 70.43 ? N4 MES 702 A 1 HETATM 5 C C5 MES . . . C 3 -49.693 27.456 6.322 1 67.8 ? C5 MES 702 A 1 HETATM 6 C C6 MES . . . C 3 -48.4 27.869 5.676 1 67.21 ? C6 MES 702 A 1 HETATM 7 C C7 MES . . . C 3 -51.965 28.09 6.869 1 68.48 ? C7 MES 702 A 1 HETATM 8 C C8 MES . . . C 3 -53.244 28.825 6.493 1 70 ? C8 MES 702 A 1 HETATM 9 S S MES . . . C 3 -54.608 28.537 7.491 1 71.58 ? S MES 702 A 1 HETATM 10 O O1S MES . . . C 3 -54.488 27.184 8 1 71.1 ? O1S MES 702 A 1 HETATM 11 O O2S MES . . . C 3 -54.567 29.545 8.531 1 74.31 ? O2S MES 702 A 1 HETATM 12 O O3S MES . . . C 3 -55.775 28.683 6.629 1 70.56 ? O3S MES 702 A 1 HETATM 13 H H21 MES . . . C 3 -48.972 30.172 4.813 1 71.73 ? H21 MES 702 A 1 HETATM 14 H H22 MES . . . C 3 -49.577 29.74 3.254 1 71.95 ? H22 MES 702 A 1 HETATM 15 H H31 MES . . . C 3 -51.451 29.943 4.886 1 71.81 ? H31 MES 702 A 1 HETATM 16 H H32 MES . . . C 3 -51.399 28.364 4.249 1 71.6 ? H32 MES 702 A 1 HETATM 17 H H51 MES . . . C 3 -49.545 27.171 7.362 1 67.49 ? H51 MES 702 A 1 HETATM 18 H H52 MES . . . C 3 -50.063 26.561 5.826 1 68.09 ? H52 MES 702 A 1 HETATM 19 H H61 MES . . . C 3 -47.939 28.731 6.155 1 67.75 ? H61 MES 702 A 1 HETATM 20 H H62 MES . . . C 3 -47.651 27.08 5.73 1 67.54 ? H62 MES 702 A 1 HETATM 21 H H71 MES . . . C 3 -52.145 27.051 6.596 1 68.13 ? H71 MES 702 A 1 HETATM 22 H H72 MES . . . C 3 -51.929 28.06 7.957 1 67.92 ? H72 MES 702 A 1 HETATM 23 H H81 MES . . . C 3 -53.435 28.668 5.433 1 70.28 ? H81 MES 702 A 1 HETATM 24 H H82 MES . . . C 3 -53.043 29.893 6.472 1 70.05 ? H82 MES 702 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #