data_5J5H # _model_server_result.job_id Pk9WjyXyV3TvrVBmLb7yRg _model_server_result.datetime_utc '2024-11-06 15:23:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j5h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":304}' # _entry.id 5J5H # _exptl.entry_id 5J5H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.32 _cell.angle_gamma 90 _cell.entry_id 5J5H _cell.length_a 107.726 _cell.length_b 130.443 _cell.length_c 107.689 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J5H _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA pentameric 5 author_and_software_defined_assembly 1 PISA pentameric 5 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,PA,QA,RA,SA,TA 1 1 F,G,H,I,J,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,UA,VA,WA,XA,YA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 M N N ? 4 N N N ? 4 S N N ? 4 T N N ? 4 X N N ? 4 BA N N ? 4 CA N N ? 4 DA N N ? 4 IA N N ? 4 LA N N ? 4 OA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 131 A CYS 123 1_555 A SG CYS 144 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 195 A CYS 187 1_555 A SG CYS 196 A CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? disulf ? disulf3 B SG CYS 131 B CYS 123 1_555 B SG CYS 144 B CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 195 B CYS 187 1_555 B SG CYS 196 B CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf5 C SG CYS 131 C CYS 123 1_555 C SG CYS 144 C CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf6 C SG CYS 195 C CYS 187 1_555 C SG CYS 196 C CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf7 D SG CYS 131 D CYS 123 1_555 D SG CYS 144 D CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 D SG CYS 195 D CYS 187 1_555 D SG CYS 196 D CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf9 E SG CYS 131 E CYS 123 1_555 E SG CYS 144 E CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf10 E SG CYS 195 E CYS 187 1_555 E SG CYS 196 E CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 F SG CYS 131 F CYS 123 1_555 F SG CYS 144 F CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf12 F SG CYS 195 F CYS 187 1_555 F SG CYS 196 F CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? disulf ? disulf13 G SG CYS 131 G CYS 123 1_555 G SG CYS 144 G CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf14 G SG CYS 195 G CYS 187 1_555 G SG CYS 196 G CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf15 H SG CYS 131 H CYS 123 1_555 H SG CYS 144 H CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf16 H SG CYS 195 H CYS 187 1_555 H SG CYS 196 H CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf17 I SG CYS 131 I CYS 123 1_555 I SG CYS 144 I CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf18 I SG CYS 195 I CYS 187 1_555 I SG CYS 196 I CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf19 J SG CYS 131 J CYS 123 1_555 J SG CYS 144 J CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf20 J SG CYS 195 J CYS 187 1_555 J SG CYS 196 J CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? covale ? covale1 A ND2 ASN 74 A ASN 66 1_555 L C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 B ND2 ASN 74 B ASN 66 1_555 P C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 C ND2 ASN 74 C ASN 66 1_555 R C1 NAG . C NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale4 D ND2 ASN 74 D ASN 66 1_555 W C1 NAG . D NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale5 E ND2 ASN 74 E ASN 66 1_555 Y C1 NAG . E NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale6 F ND2 ASN 74 F ASN 66 1_555 AA C1 NAG . F NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale7 G ND2 ASN 74 G ASN 66 1_555 GA C1 NAG . G NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale8 H ND2 ASN 74 H ASN 66 1_555 HA C1 NAG . H NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale9 I ND2 ASN 74 I ASN 66 1_555 KA C1 NAG . I NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale10 J ND2 ASN 74 J ASN 66 1_555 NA C1 NAG . J NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 345 n n P O2 PO4 sing 346 n n P O3 PO4 sing 347 n n P O4 PO4 sing 348 n n # _atom_sites.entry_id 5J5H _atom_sites.fract_transf_matrix[1][1] 0.009283 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002197 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007666 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009543 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 2 6GK A 1 301 5 6GK LIG . L 3 NAG A 1 302 1 NAG NAG . M 4 PO4 A 1 303 4 PO4 PO4 . N 4 PO4 A 1 304 9 PO4 PO4 . O 2 6GK B 1 301 1 6GK LIG . P 3 NAG B 1 302 2 NAG NAG . Q 2 6GK C 1 301 2 6GK LIG . R 3 NAG C 1 302 3 NAG NAG . S 4 PO4 C 1 303 3 PO4 PO4 . T 4 PO4 C 1 304 6 PO4 PO4 . U 2 6GK D 1 301 3 6GK LIG . V 2 6GK D 1 302 4 6GK LIG . W 3 NAG D 1 303 4 NAG NAG . X 4 PO4 D 1 304 10 PO4 PO4 . Y 3 NAG E 1 301 5 NAG NAG . Z 2 6GK F 1 301 10 6GK LIG . AA 3 NAG F 1 302 6 NAG NAG . BA 4 PO4 F 1 303 1 PO4 PO4 . CA 4 PO4 F 1 304 5 PO4 PO4 . DA 4 PO4 F 1 305 11 PO4 PO4 . EA 2 6GK G 1 301 6 6GK LIG . FA 2 6GK G 1 302 7 6GK LIG . GA 3 NAG G 1 303 7 NAG NAG . HA 3 NAG H 1 301 8 NAG NAG . IA 4 PO4 H 1 302 8 PO4 PO4 . JA 2 6GK I 1 301 8 6GK LIG . KA 3 NAG I 1 302 9 NAG NAG . LA 4 PO4 I 1 303 2 PO4 PO4 . MA 2 6GK J 1 301 9 6GK LIG . NA 3 NAG J 1 302 10 NAG NAG . OA 4 PO4 J 1 303 7 PO4 PO4 . PA 5 HOH A 1 401 41 HOH HOH . PA 5 HOH A 2 402 29 HOH HOH . PA 5 HOH A 3 403 12 HOH HOH . PA 5 HOH A 4 404 76 HOH HOH . PA 5 HOH A 5 405 24 HOH HOH . PA 5 HOH A 6 406 107 HOH HOH . PA 5 HOH A 7 407 109 HOH HOH . PA 5 HOH A 8 408 57 HOH HOH . PA 5 HOH A 9 409 98 HOH HOH . PA 5 HOH A 10 410 64 HOH HOH . PA 5 HOH A 11 411 15 HOH HOH . PA 5 HOH A 12 412 75 HOH HOH . QA 5 HOH B 1 401 4 HOH HOH . QA 5 HOH B 2 402 149 HOH HOH . QA 5 HOH B 3 403 31 HOH HOH . QA 5 HOH B 4 404 54 HOH HOH . QA 5 HOH B 5 405 67 HOH HOH . QA 5 HOH B 6 406 101 HOH HOH . QA 5 HOH B 7 407 18 HOH HOH . QA 5 HOH B 8 408 161 HOH HOH . QA 5 HOH B 9 409 39 HOH HOH . QA 5 HOH B 10 410 124 HOH HOH . QA 5 HOH B 11 411 74 HOH HOH . QA 5 HOH B 12 412 10 HOH HOH . QA 5 HOH B 13 413 141 HOH HOH . QA 5 HOH B 14 414 157 HOH HOH . QA 5 HOH B 15 415 123 HOH HOH . RA 5 HOH C 1 401 5 HOH HOH . RA 5 HOH C 2 402 34 HOH HOH . RA 5 HOH C 3 403 142 HOH HOH . RA 5 HOH C 4 404 112 HOH HOH . RA 5 HOH C 5 405 3 HOH HOH . RA 5 HOH C 6 406 129 HOH HOH . RA 5 HOH C 7 407 2 HOH HOH . RA 5 HOH C 8 408 148 HOH HOH . RA 5 HOH C 9 409 47 HOH HOH . RA 5 HOH C 10 410 51 HOH HOH . RA 5 HOH C 11 411 44 HOH HOH . RA 5 HOH C 12 412 53 HOH HOH . RA 5 HOH C 13 413 163 HOH HOH . RA 5 HOH C 14 414 100 HOH HOH . RA 5 HOH C 15 415 130 HOH HOH . SA 5 HOH D 1 401 27 HOH HOH . SA 5 HOH D 2 402 25 HOH HOH . SA 5 HOH D 3 403 55 HOH HOH . SA 5 HOH D 4 404 78 HOH HOH . SA 5 HOH D 5 405 127 HOH HOH . SA 5 HOH D 6 406 50 HOH HOH . SA 5 HOH D 7 407 77 HOH HOH . SA 5 HOH D 8 408 97 HOH HOH . SA 5 HOH D 9 409 71 HOH HOH . SA 5 HOH D 10 410 122 HOH HOH . SA 5 HOH D 11 411 120 HOH HOH . SA 5 HOH D 12 412 35 HOH HOH . SA 5 HOH D 13 413 82 HOH HOH . SA 5 HOH D 14 414 95 HOH HOH . SA 5 HOH D 15 415 73 HOH HOH . SA 5 HOH D 16 416 70 HOH HOH . SA 5 HOH D 17 417 116 HOH HOH . SA 5 HOH D 18 418 72 HOH HOH . SA 5 HOH D 19 419 79 HOH HOH . SA 5 HOH D 20 420 69 HOH HOH . TA 5 HOH E 1 401 46 HOH HOH . TA 5 HOH E 2 402 117 HOH HOH . TA 5 HOH E 3 403 104 HOH HOH . TA 5 HOH E 4 404 99 HOH HOH . TA 5 HOH E 5 405 105 HOH HOH . TA 5 HOH E 6 406 139 HOH HOH . TA 5 HOH E 7 407 103 HOH HOH . TA 5 HOH E 8 408 160 HOH HOH . TA 5 HOH E 9 409 126 HOH HOH . TA 5 HOH E 10 410 81 HOH HOH . TA 5 HOH E 11 411 133 HOH HOH . TA 5 HOH E 12 412 155 HOH HOH . UA 5 HOH F 1 401 48 HOH HOH . UA 5 HOH F 2 402 111 HOH HOH . UA 5 HOH F 3 403 136 HOH HOH . UA 5 HOH F 4 404 16 HOH HOH . UA 5 HOH F 5 405 138 HOH HOH . UA 5 HOH F 6 406 11 HOH HOH . UA 5 HOH F 7 407 83 HOH HOH . UA 5 HOH F 8 408 42 HOH HOH . UA 5 HOH F 9 409 49 HOH HOH . UA 5 HOH F 10 410 87 HOH HOH . UA 5 HOH F 11 411 28 HOH HOH . UA 5 HOH F 12 412 56 HOH HOH . UA 5 HOH F 13 413 37 HOH HOH . UA 5 HOH F 14 414 110 HOH HOH . UA 5 HOH F 15 415 153 HOH HOH . UA 5 HOH F 16 416 151 HOH HOH . UA 5 HOH F 17 417 66 HOH HOH . UA 5 HOH F 18 418 84 HOH HOH . UA 5 HOH F 19 419 125 HOH HOH . VA 5 HOH G 1 401 1 HOH HOH . VA 5 HOH G 2 402 13 HOH HOH . VA 5 HOH G 3 403 21 HOH HOH . VA 5 HOH G 4 404 43 HOH HOH . VA 5 HOH G 5 405 108 HOH HOH . VA 5 HOH G 6 406 32 HOH HOH . VA 5 HOH G 7 407 59 HOH HOH . VA 5 HOH G 8 408 135 HOH HOH . VA 5 HOH G 9 409 19 HOH HOH . VA 5 HOH G 10 410 22 HOH HOH . VA 5 HOH G 11 411 140 HOH HOH . VA 5 HOH G 12 412 145 HOH HOH . VA 5 HOH G 13 413 85 HOH HOH . VA 5 HOH G 14 414 6 HOH HOH . VA 5 HOH G 15 415 33 HOH HOH . WA 5 HOH H 1 401 26 HOH HOH . WA 5 HOH H 2 402 119 HOH HOH . WA 5 HOH H 3 403 146 HOH HOH . WA 5 HOH H 4 404 45 HOH HOH . WA 5 HOH H 5 405 88 HOH HOH . WA 5 HOH H 6 406 96 HOH HOH . WA 5 HOH H 7 407 121 HOH HOH . WA 5 HOH H 8 408 40 HOH HOH . WA 5 HOH H 9 409 89 HOH HOH . WA 5 HOH H 10 410 8 HOH HOH . WA 5 HOH H 11 411 118 HOH HOH . WA 5 HOH H 12 412 7 HOH HOH . WA 5 HOH H 13 413 158 HOH HOH . WA 5 HOH H 14 414 134 HOH HOH . XA 5 HOH I 1 401 63 HOH HOH . XA 5 HOH I 2 402 150 HOH HOH . XA 5 HOH I 3 403 144 HOH HOH . XA 5 HOH I 4 404 36 HOH HOH . XA 5 HOH I 5 405 20 HOH HOH . XA 5 HOH I 6 406 62 HOH HOH . XA 5 HOH I 7 407 159 HOH HOH . XA 5 HOH I 8 408 93 HOH HOH . XA 5 HOH I 9 409 9 HOH HOH . YA 5 HOH J 1 401 156 HOH HOH . YA 5 HOH J 2 402 137 HOH HOH . YA 5 HOH J 3 403 113 HOH HOH . YA 5 HOH J 4 404 17 HOH HOH . YA 5 HOH J 5 405 61 HOH HOH . YA 5 HOH J 6 406 106 HOH HOH . YA 5 HOH J 7 407 38 HOH HOH . YA 5 HOH J 8 408 128 HOH HOH . YA 5 HOH J 9 409 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . T 4 -19 7.605 2.666 1 48.59 ? P PO4 304 C 1 HETATM 2 O O1 PO4 . . . T 4 -18.055 6.663 1.98 1 49.95 ? O1 PO4 304 C 1 HETATM 3 O O2 PO4 . . . T 4 -20.436 7.229 2.387 1 46.6 ? O2 PO4 304 C 1 HETATM 4 O O3 PO4 . . . T 4 -18.708 8.982 2.125 1 55.96 ? O3 PO4 304 C 1 HETATM 5 O O4 PO4 . . . T 4 -18.761 7.604 4.155 1 41.82 ? O4 PO4 304 C 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 43 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 26 _model_server_stats.element_count 5 #