data_5J5L # _model_server_result.job_id krav5RPNN-vxA4WkRSCI_g _model_server_result.datetime_utc '2024-11-05 16:34:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j5l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5J5L # _exptl.entry_id 5J5L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 304.467 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ARACHIDONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5J5L _cell.length_a 124.374 _cell.length_b 124.374 _cell.length_c 124.374 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J5L _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H32 O2' _chem_comp.formula_weight 304.467 _chem_comp.id ACD _chem_comp.mon_nstd_flag . _chem_comp.name 'ARACHIDONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ACD sing 1 n n C1 O1 ACD doub 2 n n C1 O2 ACD sing 3 n n C2 C3 ACD sing 4 n n C2 H21 ACD sing 5 n n C2 H22 ACD sing 6 n n C3 C4 ACD sing 7 n n C3 H31 ACD sing 8 n n C3 H32 ACD sing 9 n n C4 C5 ACD sing 10 n n C4 H41 ACD sing 11 n n C4 H42 ACD sing 12 n n C5 C6 ACD doub 13 z n C5 H5 ACD sing 14 n n C6 C7 ACD sing 15 n n C6 H6 ACD sing 16 n n C7 C8 ACD sing 17 n n C7 H71 ACD sing 18 n n C7 H72 ACD sing 19 n n C8 C9 ACD doub 20 z n C8 H8 ACD sing 21 n n C9 C10 ACD sing 22 n n C9 H9 ACD sing 23 n n C10 C11 ACD sing 24 n n C10 H101 ACD sing 25 n n C10 H102 ACD sing 26 n n C11 C12 ACD doub 27 z n C11 H11 ACD sing 28 n n C12 C13 ACD sing 29 n n C12 H12 ACD sing 30 n n C13 C14 ACD sing 31 n n C13 H131 ACD sing 32 n n C13 H132 ACD sing 33 n n C14 C15 ACD doub 34 z n C14 H14 ACD sing 35 n n C15 C16 ACD sing 36 n n C15 H15 ACD sing 37 n n C16 C17 ACD sing 38 n n C16 H161 ACD sing 39 n n C16 H162 ACD sing 40 n n C17 C18 ACD sing 41 n n C17 H171 ACD sing 42 n n C17 H172 ACD sing 43 n n C18 C19 ACD sing 44 n n C18 H181 ACD sing 45 n n C18 H182 ACD sing 46 n n C19 C20 ACD sing 47 n n C19 H191 ACD sing 48 n n C19 H192 ACD sing 49 n n C20 H201 ACD sing 50 n n C20 H202 ACD sing 51 n n C20 H203 ACD sing 52 n n O2 HO2 ACD sing 53 n n # _atom_sites.entry_id 5J5L _atom_sites.fract_transf_matrix[1][1] 0.00804 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00804 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00804 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACD A 1 201 201 ACD ACD . C 3 HOH A 1 301 310 HOH HOH . C 3 HOH A 2 302 343 HOH HOH . C 3 HOH A 3 303 307 HOH HOH . C 3 HOH A 4 304 396 HOH HOH . C 3 HOH A 5 305 425 HOH HOH . C 3 HOH A 6 306 438 HOH HOH . C 3 HOH A 7 307 321 HOH HOH . C 3 HOH A 8 308 474 HOH HOH . C 3 HOH A 9 309 381 HOH HOH . C 3 HOH A 10 310 359 HOH HOH . C 3 HOH A 11 311 322 HOH HOH . C 3 HOH A 12 312 410 HOH HOH . C 3 HOH A 13 313 366 HOH HOH . C 3 HOH A 14 314 446 HOH HOH . C 3 HOH A 15 315 439 HOH HOH . C 3 HOH A 16 316 445 HOH HOH . C 3 HOH A 17 317 431 HOH HOH . C 3 HOH A 18 318 364 HOH HOH . C 3 HOH A 19 319 305 HOH HOH . C 3 HOH A 20 320 462 HOH HOH . C 3 HOH A 21 321 332 HOH HOH . C 3 HOH A 22 322 391 HOH HOH . C 3 HOH A 23 323 341 HOH HOH . C 3 HOH A 24 324 382 HOH HOH . C 3 HOH A 25 325 342 HOH HOH . C 3 HOH A 26 326 352 HOH HOH . C 3 HOH A 27 327 472 HOH HOH . C 3 HOH A 28 328 452 HOH HOH . C 3 HOH A 29 329 476 HOH HOH . C 3 HOH A 30 330 398 HOH HOH . C 3 HOH A 31 331 380 HOH HOH . C 3 HOH A 32 332 350 HOH HOH . C 3 HOH A 33 333 302 HOH HOH . C 3 HOH A 34 334 351 HOH HOH . C 3 HOH A 35 335 385 HOH HOH . C 3 HOH A 36 336 330 HOH HOH . C 3 HOH A 37 337 304 HOH HOH . C 3 HOH A 38 338 374 HOH HOH . C 3 HOH A 39 339 344 HOH HOH . C 3 HOH A 40 340 392 HOH HOH . C 3 HOH A 41 341 317 HOH HOH . C 3 HOH A 42 342 327 HOH HOH . C 3 HOH A 43 343 312 HOH HOH . C 3 HOH A 44 344 458 HOH HOH . C 3 HOH A 45 345 405 HOH HOH . C 3 HOH A 46 346 477 HOH HOH . C 3 HOH A 47 347 314 HOH HOH . C 3 HOH A 48 348 331 HOH HOH . C 3 HOH A 49 349 340 HOH HOH . C 3 HOH A 50 350 399 HOH HOH . C 3 HOH A 51 351 357 HOH HOH . C 3 HOH A 52 352 441 HOH HOH . C 3 HOH A 53 353 328 HOH HOH . C 3 HOH A 54 354 393 HOH HOH . C 3 HOH A 55 355 362 HOH HOH . C 3 HOH A 56 356 367 HOH HOH . C 3 HOH A 57 357 303 HOH HOH . C 3 HOH A 58 358 309 HOH HOH . C 3 HOH A 59 359 377 HOH HOH . C 3 HOH A 60 360 346 HOH HOH . C 3 HOH A 61 361 401 HOH HOH . C 3 HOH A 62 362 415 HOH HOH . C 3 HOH A 63 363 363 HOH HOH . C 3 HOH A 64 364 376 HOH HOH . C 3 HOH A 65 365 336 HOH HOH . C 3 HOH A 66 366 459 HOH HOH . C 3 HOH A 67 367 424 HOH HOH . C 3 HOH A 68 368 353 HOH HOH . C 3 HOH A 69 369 473 HOH HOH . C 3 HOH A 70 370 318 HOH HOH . C 3 HOH A 71 371 440 HOH HOH . C 3 HOH A 72 372 333 HOH HOH . C 3 HOH A 73 373 354 HOH HOH . C 3 HOH A 74 374 482 HOH HOH . C 3 HOH A 75 375 319 HOH HOH . C 3 HOH A 76 376 454 HOH HOH . C 3 HOH A 77 377 450 HOH HOH . C 3 HOH A 78 378 337 HOH HOH . C 3 HOH A 79 379 329 HOH HOH . C 3 HOH A 80 380 379 HOH HOH . C 3 HOH A 81 381 384 HOH HOH . C 3 HOH A 82 382 471 HOH HOH . C 3 HOH A 83 383 373 HOH HOH . C 3 HOH A 84 384 475 HOH HOH . C 3 HOH A 85 385 325 HOH HOH . C 3 HOH A 86 386 387 HOH HOH . C 3 HOH A 87 387 338 HOH HOH . C 3 HOH A 88 388 313 HOH HOH . C 3 HOH A 89 389 442 HOH HOH . C 3 HOH A 90 390 420 HOH HOH . C 3 HOH A 91 391 464 HOH HOH . C 3 HOH A 92 392 383 HOH HOH . C 3 HOH A 93 393 407 HOH HOH . C 3 HOH A 94 394 306 HOH HOH . C 3 HOH A 95 395 404 HOH HOH . C 3 HOH A 96 396 395 HOH HOH . C 3 HOH A 97 397 402 HOH HOH . C 3 HOH A 98 398 469 HOH HOH . C 3 HOH A 99 399 490 HOH HOH . C 3 HOH A 100 400 369 HOH HOH . C 3 HOH A 101 401 347 HOH HOH . C 3 HOH A 102 402 430 HOH HOH . C 3 HOH A 103 403 356 HOH HOH . C 3 HOH A 104 404 426 HOH HOH . C 3 HOH A 105 405 460 HOH HOH . C 3 HOH A 106 406 455 HOH HOH . C 3 HOH A 107 407 470 HOH HOH . C 3 HOH A 108 408 457 HOH HOH . C 3 HOH A 109 409 419 HOH HOH . C 3 HOH A 110 410 447 HOH HOH . C 3 HOH A 111 411 390 HOH HOH . C 3 HOH A 112 412 345 HOH HOH . C 3 HOH A 113 413 371 HOH HOH . C 3 HOH A 114 414 361 HOH HOH . C 3 HOH A 115 415 422 HOH HOH . C 3 HOH A 116 416 301 HOH HOH . C 3 HOH A 117 417 370 HOH HOH . C 3 HOH A 118 418 316 HOH HOH . C 3 HOH A 119 419 416 HOH HOH . C 3 HOH A 120 420 335 HOH HOH . C 3 HOH A 121 421 423 HOH HOH . C 3 HOH A 122 422 355 HOH HOH . C 3 HOH A 123 423 360 HOH HOH . C 3 HOH A 124 424 339 HOH HOH . C 3 HOH A 125 425 427 HOH HOH . C 3 HOH A 126 426 348 HOH HOH . C 3 HOH A 127 427 311 HOH HOH . C 3 HOH A 128 428 456 HOH HOH . C 3 HOH A 129 429 417 HOH HOH . C 3 HOH A 130 430 434 HOH HOH . C 3 HOH A 131 431 403 HOH HOH . C 3 HOH A 132 432 453 HOH HOH . C 3 HOH A 133 433 421 HOH HOH . C 3 HOH A 134 434 320 HOH HOH . C 3 HOH A 135 435 308 HOH HOH . C 3 HOH A 136 436 397 HOH HOH . C 3 HOH A 137 437 388 HOH HOH . C 3 HOH A 138 438 324 HOH HOH . C 3 HOH A 139 439 485 HOH HOH . C 3 HOH A 140 440 449 HOH HOH . C 3 HOH A 141 441 372 HOH HOH . C 3 HOH A 142 442 465 HOH HOH . C 3 HOH A 143 443 488 HOH HOH . C 3 HOH A 144 444 463 HOH HOH . C 3 HOH A 145 445 495 HOH HOH . C 3 HOH A 146 446 429 HOH HOH . C 3 HOH A 147 447 368 HOH HOH . C 3 HOH A 148 448 451 HOH HOH . C 3 HOH A 149 449 503 HOH HOH . C 3 HOH A 150 450 365 HOH HOH . C 3 HOH A 151 451 432 HOH HOH . C 3 HOH A 152 452 334 HOH HOH . C 3 HOH A 153 453 358 HOH HOH . C 3 HOH A 154 454 315 HOH HOH . C 3 HOH A 155 455 468 HOH HOH . C 3 HOH A 156 456 412 HOH HOH . C 3 HOH A 157 457 436 HOH HOH . C 3 HOH A 158 458 494 HOH HOH . C 3 HOH A 159 459 437 HOH HOH . C 3 HOH A 160 460 486 HOH HOH . C 3 HOH A 161 461 323 HOH HOH . C 3 HOH A 162 462 498 HOH HOH . C 3 HOH A 163 463 386 HOH HOH . C 3 HOH A 164 464 497 HOH HOH . C 3 HOH A 165 465 504 HOH HOH . C 3 HOH A 166 466 487 HOH HOH . C 3 HOH A 167 467 389 HOH HOH . C 3 HOH A 168 468 409 HOH HOH . C 3 HOH A 169 469 479 HOH HOH . C 3 HOH A 170 470 481 HOH HOH . C 3 HOH A 171 471 461 HOH HOH . C 3 HOH A 172 472 326 HOH HOH . C 3 HOH A 173 473 499 HOH HOH . C 3 HOH A 174 474 492 HOH HOH . C 3 HOH A 175 475 394 HOH HOH . C 3 HOH A 176 476 443 HOH HOH . C 3 HOH A 177 477 418 HOH HOH . C 3 HOH A 178 478 467 HOH HOH . C 3 HOH A 179 479 428 HOH HOH . C 3 HOH A 180 480 478 HOH HOH . C 3 HOH A 181 481 349 HOH HOH . C 3 HOH A 182 482 413 HOH HOH . C 3 HOH A 183 483 433 HOH HOH . C 3 HOH A 184 484 378 HOH HOH . C 3 HOH A 185 485 408 HOH HOH . C 3 HOH A 186 486 411 HOH HOH . C 3 HOH A 187 487 493 HOH HOH . C 3 HOH A 188 488 435 HOH HOH . C 3 HOH A 189 489 500 HOH HOH . C 3 HOH A 190 490 489 HOH HOH . C 3 HOH A 191 491 448 HOH HOH . C 3 HOH A 192 492 491 HOH HOH . C 3 HOH A 193 493 400 HOH HOH . C 3 HOH A 194 494 484 HOH HOH . C 3 HOH A 195 495 502 HOH HOH . C 3 HOH A 196 496 501 HOH HOH . C 3 HOH A 197 497 496 HOH HOH . C 3 HOH A 198 498 375 HOH HOH . C 3 HOH A 199 499 483 HOH HOH . C 3 HOH A 200 500 406 HOH HOH . C 3 HOH A 201 501 444 HOH HOH . C 3 HOH A 202 502 466 HOH HOH . C 3 HOH A 203 503 480 HOH HOH . C 3 HOH A 204 504 414 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ACD . . . B 2 -4.543 70.2 21.36 1 27.42 ? C1 ACD 201 A 1 HETATM 2 C C2 ACD . . . B 2 -4.906 71.357 22.26 1 31.68 ? C2 ACD 201 A 1 HETATM 3 C C3 ACD . . . B 2 -6.4 71.367 22.513 1 28.01 ? C3 ACD 201 A 1 HETATM 4 C C4 ACD . . . B 2 -6.746 72.31 23.667 1 25.88 ? C4 ACD 201 A 1 HETATM 5 C C5 ACD . . . B 2 -5.933 71.961 24.891 1 26.26 ? C5 ACD 201 A 1 HETATM 6 C C6 ACD . . . B 2 -5.088 72.796 25.523 1 31.13 ? C6 ACD 201 A 1 HETATM 7 C C7 ACD . . . B 2 -4.883 74.241 25.142 1 31.6 ? C7 ACD 201 A 1 HETATM 8 C C8 ACD . . . B 2 -3.565 74.478 24.423 1 28.17 ? C8 ACD 201 A 1 HETATM 9 C C9 ACD . . . B 2 -3.408 75.372 23.433 1 30.21 ? C9 ACD 201 A 1 HETATM 10 C C10 ACD . . . B 2 -4.51 76.236 22.845 1 31.75 ? C10 ACD 201 A 1 HETATM 11 C C11 ACD . . . B 2 -4.49 77.623 23.433 1 33.07 ? C11 ACD 201 A 1 HETATM 12 C C12 ACD . . . B 2 -4.226 78.762 22.778 1 29.85 ? C12 ACD 201 A 1 HETATM 13 C C13 ACD . . . B 2 -3.858 78.913 21.316 1 33.78 ? C13 ACD 201 A 1 HETATM 14 C C14 ACD . . . B 2 -2.343 78.821 21.265 1 35.32 ? C14 ACD 201 A 1 HETATM 15 C C15 ACD . . . B 2 -1.567 79.48 20.398 1 34.43 ? C15 ACD 201 A 1 HETATM 16 C C16 ACD . . . B 2 -2.106 80.42 19.356 1 28.08 ? C16 ACD 201 A 1 HETATM 17 C C17 ACD . . . B 2 -0.982 81.325 18.873 1 33.63 ? C17 ACD 201 A 1 HETATM 18 C C18 ACD . . . B 2 -0.539 82.302 19.947 1 31.92 ? C18 ACD 201 A 1 HETATM 19 C C19 ACD . . . B 2 0.464 83.292 19.405 1 35.08 ? C19 ACD 201 A 1 HETATM 20 C C20 ACD . . . B 2 1.39 83.86 20.449 1 30.7 ? C20 ACD 201 A 1 HETATM 21 O O1 ACD . . . B 2 -4.574 70.445 20.147 1 26.69 ? O1 ACD 201 A 1 HETATM 22 O O2 ACD . . . B 2 -4.211 69.095 21.831 1 28.46 ? O2 ACD 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #