data_5J5T # _model_server_result.job_id Hvakk41qxAuxcUETQEuhYw _model_server_result.datetime_utc '2024-11-22 06:19:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j5t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 5J5T # _exptl.entry_id 5J5T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 367.468 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[2-(piperidin-4-yl)-1,3-thiazol-5-yl]-3-[(pyridin-4-yl)methoxy]pyridin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.04 _cell.angle_gamma 90 _cell.entry_id 5J5T _cell.length_a 92.703 _cell.length_b 63.324 _cell.length_c 64.916 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J5T _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 92.703 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 134 A LEU 144 1_555 A N TPO 135 A TPO 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale2 A C TPO 135 A TPO 145 1_555 A N ASP 136 A ASP 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? # _chem_comp.formula 'C19 H21 N5 O S' _chem_comp.formula_weight 367.468 _chem_comp.id 6G2 _chem_comp.mon_nstd_flag . _chem_comp.name 5-[2-(piperidin-4-yl)-1,3-thiazol-5-yl]-3-[(pyridin-4-yl)methoxy]pyridin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C11 6G2 sing 1 n n C10 N4 6G2 sing 2 n n N3 C5 6G2 sing 3 n y N3 C6 6G2 doub 4 n y C11 C7 6G2 sing 5 n n C7 C6 6G2 sing 6 n n C7 C8 6G2 sing 7 n n C9 N4 6G2 sing 8 n n C9 C8 6G2 sing 9 n n C5 C4 6G2 doub 10 n y C6 S1 6G2 sing 11 n y C17 C16 6G2 doub 12 n y C17 N5 6G2 sing 13 n y C16 C15 6G2 sing 14 n y N5 C18 6G2 doub 15 n y C4 S1 6G2 sing 16 n y C4 C3 6G2 sing 17 n n C15 C14 6G2 sing 18 n n C15 C19 6G2 doub 19 n y C14 O1 6G2 sing 20 n n C12 C3 6G2 doub 21 n y C12 C13 6G2 sing 22 n y C18 C19 6G2 sing 23 n y C3 C2 6G2 sing 24 n y O1 C13 6G2 sing 25 n n C13 C1 6G2 doub 26 n y C2 N2 6G2 doub 27 n y C1 N2 6G2 sing 28 n y C1 N1 6G2 sing 29 n n C2 H1 6G2 sing 30 n n C11 H2 6G2 sing 31 n n C11 H3 6G2 sing 32 n n C12 H4 6G2 sing 33 n n C14 H5 6G2 sing 34 n n C14 H6 6G2 sing 35 n n C16 H7 6G2 sing 36 n n N1 H8 6G2 sing 37 n n N1 H9 6G2 sing 38 n n C8 H10 6G2 sing 39 n n C8 H11 6G2 sing 40 n n C7 H12 6G2 sing 41 n n C5 H13 6G2 sing 42 n n N4 H14 6G2 sing 43 n n C9 H16 6G2 sing 44 n n C9 H17 6G2 sing 45 n n C10 H18 6G2 sing 46 n n C10 H19 6G2 sing 47 n n C17 H20 6G2 sing 48 n n C18 H21 6G2 sing 49 n n C19 H22 6G2 sing 50 n n # _atom_sites.entry_id 5J5T _atom_sites.fract_transf_matrix[1][1] 0.010787 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00527 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015792 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017145 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6G2 A 1 901 901 6G2 499 . C 3 HOH A 1 1001 28 HOH HOH . C 3 HOH A 2 1002 22 HOH HOH . C 3 HOH A 3 1003 21 HOH HOH . C 3 HOH A 4 1004 5 HOH HOH . C 3 HOH A 5 1005 11 HOH HOH . C 3 HOH A 6 1006 24 HOH HOH . C 3 HOH A 7 1007 25 HOH HOH . C 3 HOH A 8 1008 9 HOH HOH . C 3 HOH A 9 1009 10 HOH HOH . C 3 HOH A 10 1010 2 HOH HOH . C 3 HOH A 11 1011 1 HOH HOH . C 3 HOH A 12 1012 8 HOH HOH . C 3 HOH A 13 1013 4 HOH HOH . C 3 HOH A 14 1014 7 HOH HOH . C 3 HOH A 15 1015 3 HOH HOH . C 3 HOH A 16 1016 6 HOH HOH . C 3 HOH A 17 1017 19 HOH HOH . C 3 HOH A 18 1018 17 HOH HOH . C 3 HOH A 19 1019 20 HOH HOH . C 3 HOH A 20 1020 16 HOH HOH . C 3 HOH A 21 1021 23 HOH HOH . C 3 HOH A 22 1022 15 HOH HOH . C 3 HOH A 23 1023 18 HOH HOH . C 3 HOH A 24 1024 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 6G2 . . . B 2 20.189 -9.05 15.371 1 31.64 ? C1 6G2 901 A 1 HETATM 2 C C2 6G2 . . . B 2 17.935 -8.747 14.712 1 32.53 ? C2 6G2 901 A 1 HETATM 3 C C3 6G2 . . . B 2 18.333 -8.462 13.41 1 34.21 ? C3 6G2 901 A 1 HETATM 4 C C11 6G2 . . . B 2 13.747 -6.124 10.384 1 50.56 ? C11 6G2 901 A 1 HETATM 5 C C12 6G2 . . . B 2 19.685 -8.488 13.077 1 28.36 ? C12 6G2 901 A 1 HETATM 6 C C13 6G2 . . . B 2 20.611 -8.776 14.076 1 32.54 ? C13 6G2 901 A 1 HETATM 7 C C14 6G2 . . . B 2 22.328 -8.553 12.511 1 44.64 ? C14 6G2 901 A 1 HETATM 8 C C15 6G2 . . . B 2 23.697 -8.762 12.363 1 50.92 ? C15 6G2 901 A 1 HETATM 9 C C16 6G2 . . . B 2 24.338 -8.396 11.184 1 52.02 ? C16 6G2 901 A 1 HETATM 10 N N2 6G2 . . . B 2 18.889 -9.036 15.695 1 29.9 ? N2 6G2 901 A 1 HETATM 11 N N1 6G2 . . . B 2 21.14 -9.321 16.262 1 26.51 ? N1 6G2 901 A 1 HETATM 12 C C8 6G2 . . . B 2 12.995 -8.089 11.681 1 36.75 ? C8 6G2 901 A 1 HETATM 13 C C4 6G2 . . . B 2 17.412 -8.194 12.487 1 38.6 ? C4 6G2 901 A 1 HETATM 14 N N3 6G2 . . . B 2 16.545 -7.64 10.497 1 39.17 ? N3 6G2 901 A 1 HETATM 15 C C7 6G2 . . . B 2 14.013 -7.593 10.667 1 57.22 ? C7 6G2 901 A 1 HETATM 16 C C6 6G2 . . . B 2 15.423 -7.779 11.211 1 47.47 ? C6 6G2 901 A 1 HETATM 17 C C5 6G2 . . . B 2 17.663 -7.868 11.215 1 39.09 ? C5 6G2 901 A 1 HETATM 18 N N4 6G2 . . . B 2 11.347 -6.47 10.822 1 38.34 ? N4 6G2 901 A 1 HETATM 19 C C9 6G2 . . . B 2 11.602 -7.89 11.107 1 29.78 ? C9 6G2 901 A 1 HETATM 20 N N5 6G2 . . . B 2 26.438 -9.194 12.074 1 35.99 ? N5 6G2 901 A 1 HETATM 21 C C10 6G2 . . . B 2 12.333 -5.98 9.844 1 49.09 ? C10 6G2 901 A 1 HETATM 22 S S1 6G2 . . . B 2 15.792 -8.192 12.748 1 35.49 ? S1 6G2 901 A 1 HETATM 23 O O1 6G2 . . . B 2 21.957 -8.83 13.867 1 36.07 ? O1 6G2 901 A 1 HETATM 24 C C17 6G2 . . . B 2 25.705 -8.608 11.036 1 41.66 ? C17 6G2 901 A 1 HETATM 25 C C18 6G2 . . . B 2 25.79 -9.563 13.258 1 45.12 ? C18 6G2 901 A 1 HETATM 26 C C19 6G2 . . . B 2 24.423 -9.347 13.395 1 46.64 ? C19 6G2 901 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 26 #