data_5J6A # _model_server_result.job_id -QwSfV9gGjOsqsriahubwg _model_server_result.datetime_utc '2024-12-27 03:06:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j6a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5J6A # _exptl.entry_id 5J6A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 501.555 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S)-3-amino-4-[4-({2-[(2,4-dihydroxyphenyl)sulfonyl]-2H-isoindol-5-yl}amino)piperidin-1-yl]-4-oxobutanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5J6A _cell.length_a 109.389 _cell.length_b 109.389 _cell.length_c 84.42 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J6A _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -109.389 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H27 N5 O6 S' _chem_comp.formula_weight 501.555 _chem_comp.id P46 _chem_comp.mon_nstd_flag . _chem_comp.name (3S)-3-amino-4-[4-({2-[(2,4-dihydroxyphenyl)sulfonyl]-2H-isoindol-5-yl}amino)piperidin-1-yl]-4-oxobutanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O09 S07 P46 doub 237 n n C06 C05 P46 doub 238 n y C06 C01 P46 sing 239 n y C05 C04 P46 sing 240 n y O35 C01 P46 sing 241 n n C01 C02 P46 doub 242 n y S07 C04 P46 sing 243 n n S07 O08 P46 doub 244 n n S07 N10 P46 sing 245 n n C04 C03 P46 doub 246 n y C14 N10 P46 sing 247 n y C14 C13 P46 doub 248 n y N10 C11 P46 sing 249 n y C13 C15 P46 sing 250 n y C13 C12 P46 sing 251 n y C03 C02 P46 sing 252 n y C03 O34 P46 sing 253 n n C15 C16 P46 doub 254 n y C11 C12 P46 doub 255 n y C12 C18 P46 sing 256 n y C16 C17 P46 sing 257 n y C18 C17 P46 doub 258 n y C17 N19 P46 sing 259 n n N19 C20 P46 sing 260 n n C20 C21 P46 sing 261 n n C20 C25 P46 sing 262 n n C21 C22 P46 sing 263 n n C22 N23 P46 sing 264 n n O30 C29 P46 doub 265 n n C25 C24 P46 sing 266 n n N31 C29 P46 sing 267 n n C24 N23 P46 sing 268 n n N23 C26 P46 sing 269 n n C29 C28 P46 sing 270 n n C26 C27 P46 sing 271 n n C26 O33 P46 doub 272 n n C27 C28 P46 sing 273 n n C27 N32 P46 sing 274 n n C02 H1 P46 sing 275 n n C05 H2 P46 sing 276 n n C11 H3 P46 sing 277 n n C14 H4 P46 sing 278 n n C15 H5 P46 sing 279 n n C06 H6 P46 sing 280 n n C16 H7 P46 sing 281 n n C18 H8 P46 sing 282 n n N19 H9 P46 sing 283 n n C20 H10 P46 sing 284 n n C21 H11 P46 sing 285 n n C21 H12 P46 sing 286 n n C22 H13 P46 sing 287 n n C22 H14 P46 sing 288 n n C24 H15 P46 sing 289 n n C24 H16 P46 sing 290 n n C25 H17 P46 sing 291 n n C25 H18 P46 sing 292 n n C27 H19 P46 sing 293 n n C28 H20 P46 sing 294 n n C28 H21 P46 sing 295 n n N31 H22 P46 sing 296 n n N31 H23 P46 sing 297 n n N32 H24 P46 sing 298 n n N32 H25 P46 sing 299 n n O34 H27 P46 sing 300 n n O35 H28 P46 sing 301 n n # _atom_sites.entry_id 5J6A _atom_sites.fract_transf_matrix[1][1] 0.009142 _atom_sites.fract_transf_matrix[1][2] 0.005278 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010556 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011846 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 P46 A 1 501 1 P46 S46 . C 3 HOH A 1 601 152 HOH HOH . C 3 HOH A 2 602 125 HOH HOH . C 3 HOH A 3 603 184 HOH HOH . C 3 HOH A 4 604 57 HOH HOH . C 3 HOH A 5 605 77 HOH HOH . C 3 HOH A 6 606 113 HOH HOH . C 3 HOH A 7 607 135 HOH HOH . C 3 HOH A 8 608 108 HOH HOH . C 3 HOH A 9 609 1 HOH HOH . C 3 HOH A 10 610 38 HOH HOH . C 3 HOH A 11 611 35 HOH HOH . C 3 HOH A 12 612 52 HOH HOH . C 3 HOH A 13 613 78 HOH HOH . C 3 HOH A 14 614 9 HOH HOH . C 3 HOH A 15 615 76 HOH HOH . C 3 HOH A 16 616 44 HOH HOH . C 3 HOH A 17 617 128 HOH HOH . C 3 HOH A 18 618 133 HOH HOH . C 3 HOH A 19 619 32 HOH HOH . C 3 HOH A 20 620 73 HOH HOH . C 3 HOH A 21 621 106 HOH HOH . C 3 HOH A 22 622 12 HOH HOH . C 3 HOH A 23 623 154 HOH HOH . C 3 HOH A 24 624 144 HOH HOH . C 3 HOH A 25 625 34 HOH HOH . C 3 HOH A 26 626 22 HOH HOH . C 3 HOH A 27 627 104 HOH HOH . C 3 HOH A 28 628 121 HOH HOH . C 3 HOH A 29 629 20 HOH HOH . C 3 HOH A 30 630 177 HOH HOH . C 3 HOH A 31 631 3 HOH HOH . C 3 HOH A 32 632 14 HOH HOH . C 3 HOH A 33 633 162 HOH HOH . C 3 HOH A 34 634 54 HOH HOH . C 3 HOH A 35 635 109 HOH HOH . C 3 HOH A 36 636 5 HOH HOH . C 3 HOH A 37 637 153 HOH HOH . C 3 HOH A 38 638 82 HOH HOH . C 3 HOH A 39 639 10 HOH HOH . C 3 HOH A 40 640 86 HOH HOH . C 3 HOH A 41 641 29 HOH HOH . C 3 HOH A 42 642 23 HOH HOH . C 3 HOH A 43 643 142 HOH HOH . C 3 HOH A 44 644 72 HOH HOH . C 3 HOH A 45 645 98 HOH HOH . C 3 HOH A 46 646 51 HOH HOH . C 3 HOH A 47 647 117 HOH HOH . C 3 HOH A 48 648 63 HOH HOH . C 3 HOH A 49 649 37 HOH HOH . C 3 HOH A 50 650 15 HOH HOH . C 3 HOH A 51 651 17 HOH HOH . C 3 HOH A 52 652 39 HOH HOH . C 3 HOH A 53 653 31 HOH HOH . C 3 HOH A 54 654 85 HOH HOH . C 3 HOH A 55 655 179 HOH HOH . C 3 HOH A 56 656 2 HOH HOH . C 3 HOH A 57 657 11 HOH HOH . C 3 HOH A 58 658 30 HOH HOH . C 3 HOH A 59 659 111 HOH HOH . C 3 HOH A 60 660 60 HOH HOH . C 3 HOH A 61 661 24 HOH HOH . C 3 HOH A 62 662 61 HOH HOH . C 3 HOH A 63 663 7 HOH HOH . C 3 HOH A 64 664 131 HOH HOH . C 3 HOH A 65 665 19 HOH HOH . C 3 HOH A 66 666 145 HOH HOH . C 3 HOH A 67 667 96 HOH HOH . C 3 HOH A 68 668 27 HOH HOH . C 3 HOH A 69 669 97 HOH HOH . C 3 HOH A 70 670 112 HOH HOH . C 3 HOH A 71 671 180 HOH HOH . C 3 HOH A 72 672 25 HOH HOH . C 3 HOH A 73 673 64 HOH HOH . C 3 HOH A 74 674 100 HOH HOH . C 3 HOH A 75 675 158 HOH HOH . C 3 HOH A 76 676 88 HOH HOH . C 3 HOH A 77 677 45 HOH HOH . C 3 HOH A 78 678 101 HOH HOH . C 3 HOH A 79 679 160 HOH HOH . C 3 HOH A 80 680 90 HOH HOH . C 3 HOH A 81 681 118 HOH HOH . C 3 HOH A 82 682 41 HOH HOH . C 3 HOH A 83 683 126 HOH HOH . C 3 HOH A 84 684 110 HOH HOH . C 3 HOH A 85 685 132 HOH HOH . C 3 HOH A 86 686 66 HOH HOH . C 3 HOH A 87 687 107 HOH HOH . C 3 HOH A 88 688 122 HOH HOH . C 3 HOH A 89 689 176 HOH HOH . C 3 HOH A 90 690 87 HOH HOH . C 3 HOH A 91 691 181 HOH HOH . C 3 HOH A 92 692 84 HOH HOH . C 3 HOH A 93 693 141 HOH HOH . C 3 HOH A 94 694 136 HOH HOH . C 3 HOH A 95 695 143 HOH HOH . C 3 HOH A 96 696 81 HOH HOH . C 3 HOH A 97 697 137 HOH HOH . C 3 HOH A 98 698 175 HOH HOH . C 3 HOH A 99 699 163 HOH HOH . C 3 HOH A 100 700 150 HOH HOH . C 3 HOH A 101 701 129 HOH HOH . C 3 HOH A 102 702 115 HOH HOH . C 3 HOH A 103 703 36 HOH HOH . C 3 HOH A 104 704 83 HOH HOH . C 3 HOH A 105 705 174 HOH HOH . C 3 HOH A 106 706 178 HOH HOH . C 3 HOH A 107 707 183 HOH HOH . C 3 HOH A 108 708 161 HOH HOH . C 3 HOH A 109 709 182 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 P46 . . . B 2 -58.497 11.199 9.186 1 17.39 ? C01 P46 501 A 1 HETATM 2 C C02 P46 . . . B 2 -59.066 10.783 10.396 1 16.07 ? C02 P46 501 A 1 HETATM 3 C C04 P46 . . . B 2 -61.221 10.388 9.236 1 14.26 ? C04 P46 501 A 1 HETATM 4 C C05 P46 . . . B 2 -60.58 10.837 8.073 1 17.03 ? C05 P46 501 A 1 HETATM 5 O O09 P46 . . . B 2 -63.305 10.105 7.871 1 21.22 ? O09 P46 501 A 1 HETATM 6 C C11 P46 . . . B 2 -65.118 10.843 10.493 1 23.03 ? C11 P46 501 A 1 HETATM 7 C C12 P46 . . . B 2 -65.736 12.223 10.727 1 26.14 ? C12 P46 501 A 1 HETATM 8 C C13 P46 . . . B 2 -64.813 13.197 10.352 1 22.41 ? C13 P46 501 A 1 HETATM 9 C C14 P46 . . . B 2 -63.54 12.544 9.859 1 20.88 ? C14 P46 501 A 1 HETATM 10 C C15 P46 . . . B 2 -65.146 14.552 10.472 1 25.23 ? C15 P46 501 A 1 HETATM 11 C C03 P46 . . . B 2 -60.419 10.409 10.39 1 15.42 ? C03 P46 501 A 1 HETATM 12 C C06 P46 . . . B 2 -59.255 11.233 8.023 1 16.78 ? C06 P46 501 A 1 HETATM 13 S S07 P46 . . . B 2 -62.839 9.952 9.203 1 22.73 ? S07 P46 501 A 1 HETATM 14 O O08 P46 . . . B 2 -62.989 8.708 9.874 1 22.43 ? O08 P46 501 A 1 HETATM 15 N N10 P46 . . . B 2 -63.712 11.051 10.066 1 23.26 ? N10 P46 501 A 1 HETATM 16 C C16 P46 . . . B 2 -66.413 14.926 10.972 1 25.75 ? C16 P46 501 A 1 HETATM 17 C C17 P46 . . . B 2 -67.351 13.967 11.355 1 26.77 ? C17 P46 501 A 1 HETATM 18 C C18 P46 . . . B 2 -66.977 12.579 11.213 1 21.12 ? C18 P46 501 A 1 HETATM 19 N N19 P46 . . . B 2 -68.64 14.273 11.854 1 25.4 ? N19 P46 501 A 1 HETATM 20 C C20 P46 . . . B 2 -69.708 13.323 12.122 1 28.19 ? C20 P46 501 A 1 HETATM 21 C C21 P46 . . . B 2 -71.15 13.93 12.191 1 30.55 ? C21 P46 501 A 1 HETATM 22 C C22 P46 . . . B 2 -72.235 12.942 12.597 1 33.38 ? C22 P46 501 A 1 HETATM 23 N N23 P46 . . . B 2 -71.939 12.275 13.879 1 34.71 ? N23 P46 501 A 1 HETATM 24 C C24 P46 . . . B 2 -70.65 11.569 13.806 1 30.29 ? C24 P46 501 A 1 HETATM 25 C C25 P46 . . . B 2 -69.521 12.531 13.449 1 25.23 ? C25 P46 501 A 1 HETATM 26 C C26 P46 . . . B 2 -72.787 12.34 14.992 1 41.77 ? C26 P46 501 A 1 HETATM 27 C C27 P46 . . . B 2 -74.169 13.106 15.034 1 49.69 ? C27 P46 501 A 1 HETATM 28 C C28 P46 . . . B 2 -73.982 14.654 15.248 1 55.3 ? C28 P46 501 A 1 HETATM 29 C C29 P46 . . . B 2 -74.23 15.417 13.964 1 58.55 ? C29 P46 501 A 1 HETATM 30 O O30 P46 . . . B 2 -73.328 15.969 13.338 1 62.27 ? O30 P46 501 A 1 HETATM 31 N N31 P46 . . . B 2 -75.528 15.478 13.465 1 62.22 ? N31 P46 501 A 1 HETATM 32 N N32 P46 . . . B 2 -74.976 12.534 16.102 1 56.42 ? N32 P46 501 A 1 HETATM 33 O O33 P46 . . . B 2 -72.428 11.74 16.014 1 41.88 ? O33 P46 501 A 1 HETATM 34 O O34 P46 . . . B 2 -61.022 9.992 11.572 1 15.49 ? O34 P46 501 A 1 HETATM 35 O O35 P46 . . . B 2 -57.201 11.582 9.147 1 16.45 ? O35 P46 501 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #