data_5J6C # _model_server_result.job_id B9tsnALvmuK5MFNIxrIsNA _model_server_result.datetime_utc '2024-11-27 23:42:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5j6c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 5J6C # _exptl.entry_id 5J6C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5J6C _cell.length_a 67.908 _cell.length_b 70.732 _cell.length_c 87.882 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5J6C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 5J6C _atom_sites.fract_transf_matrix[1][1] 0.014726 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014138 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011379 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 201 1 FMN FMN . D 3 IMD A 1 202 2 IMD IMD . E 2 FMN B 1 201 2 FMN FMN . F 3 IMD B 1 202 1 IMD IMD . G 4 HOH A 1 301 107 HOH HOH . G 4 HOH A 2 302 113 HOH HOH . G 4 HOH A 3 303 94 HOH HOH . G 4 HOH A 4 304 81 HOH HOH . G 4 HOH A 5 305 121 HOH HOH . G 4 HOH A 6 306 75 HOH HOH . G 4 HOH A 7 307 84 HOH HOH . G 4 HOH A 8 308 123 HOH HOH . G 4 HOH A 9 309 20 HOH HOH . G 4 HOH A 10 310 79 HOH HOH . G 4 HOH A 11 311 37 HOH HOH . G 4 HOH A 12 312 8 HOH HOH . G 4 HOH A 13 313 49 HOH HOH . G 4 HOH A 14 314 36 HOH HOH . G 4 HOH A 15 315 22 HOH HOH . G 4 HOH A 16 316 43 HOH HOH . G 4 HOH A 17 317 58 HOH HOH . G 4 HOH A 18 318 25 HOH HOH . G 4 HOH A 19 319 3 HOH HOH . G 4 HOH A 20 320 66 HOH HOH . G 4 HOH A 21 321 7 HOH HOH . G 4 HOH A 22 322 65 HOH HOH . G 4 HOH A 23 323 90 HOH HOH . G 4 HOH A 24 324 33 HOH HOH . G 4 HOH A 25 325 46 HOH HOH . G 4 HOH A 26 326 67 HOH HOH . G 4 HOH A 27 327 82 HOH HOH . G 4 HOH A 28 328 64 HOH HOH . G 4 HOH A 29 329 51 HOH HOH . G 4 HOH A 30 330 34 HOH HOH . G 4 HOH A 31 331 59 HOH HOH . G 4 HOH A 32 332 13 HOH HOH . G 4 HOH A 33 333 70 HOH HOH . G 4 HOH A 34 334 26 HOH HOH . G 4 HOH A 35 335 38 HOH HOH . G 4 HOH A 36 336 42 HOH HOH . G 4 HOH A 37 337 100 HOH HOH . G 4 HOH A 38 338 95 HOH HOH . G 4 HOH A 39 339 101 HOH HOH . G 4 HOH A 40 340 118 HOH HOH . G 4 HOH A 41 341 45 HOH HOH . G 4 HOH A 42 342 63 HOH HOH . G 4 HOH A 43 343 32 HOH HOH . G 4 HOH A 44 344 52 HOH HOH . G 4 HOH A 45 345 68 HOH HOH . G 4 HOH A 46 346 93 HOH HOH . G 4 HOH A 47 347 35 HOH HOH . G 4 HOH A 48 348 104 HOH HOH . G 4 HOH A 49 349 77 HOH HOH . G 4 HOH A 50 350 60 HOH HOH . G 4 HOH A 51 351 102 HOH HOH . G 4 HOH A 52 352 80 HOH HOH . G 4 HOH A 53 353 92 HOH HOH . G 4 HOH A 54 354 72 HOH HOH . G 4 HOH A 55 355 111 HOH HOH . G 4 HOH A 56 356 31 HOH HOH . G 4 HOH A 57 357 115 HOH HOH . G 4 HOH A 58 358 62 HOH HOH . G 4 HOH A 59 359 108 HOH HOH . G 4 HOH A 60 360 30 HOH HOH . G 4 HOH A 61 361 96 HOH HOH . G 4 HOH A 62 362 89 HOH HOH . G 4 HOH A 63 363 88 HOH HOH . G 4 HOH A 64 364 85 HOH HOH . H 4 HOH B 1 301 73 HOH HOH . H 4 HOH B 2 302 83 HOH HOH . H 4 HOH B 3 303 4 HOH HOH . H 4 HOH B 4 304 39 HOH HOH . H 4 HOH B 5 305 97 HOH HOH . H 4 HOH B 6 306 98 HOH HOH . H 4 HOH B 7 307 5 HOH HOH . H 4 HOH B 8 308 9 HOH HOH . H 4 HOH B 9 309 119 HOH HOH . H 4 HOH B 10 311 2 HOH HOH . H 4 HOH B 11 312 11 HOH HOH . H 4 HOH B 12 313 1 HOH HOH . H 4 HOH B 13 314 57 HOH HOH . H 4 HOH B 14 315 91 HOH HOH . H 4 HOH B 15 316 28 HOH HOH . H 4 HOH B 16 317 18 HOH HOH . H 4 HOH B 17 318 21 HOH HOH . H 4 HOH B 18 319 106 HOH HOH . H 4 HOH B 19 320 23 HOH HOH . H 4 HOH B 20 321 24 HOH HOH . H 4 HOH B 21 322 40 HOH HOH . H 4 HOH B 22 323 99 HOH HOH . H 4 HOH B 23 324 71 HOH HOH . H 4 HOH B 24 325 10 HOH HOH . H 4 HOH B 25 326 19 HOH HOH . H 4 HOH B 26 327 116 HOH HOH . H 4 HOH B 27 328 112 HOH HOH . H 4 HOH B 28 329 16 HOH HOH . H 4 HOH B 29 330 15 HOH HOH . H 4 HOH B 30 331 69 HOH HOH . H 4 HOH B 31 332 27 HOH HOH . H 4 HOH B 32 333 12 HOH HOH . H 4 HOH B 33 334 86 HOH HOH . H 4 HOH B 34 335 6 HOH HOH . H 4 HOH B 35 336 103 HOH HOH . H 4 HOH B 36 337 110 HOH HOH . H 4 HOH B 37 338 78 HOH HOH . H 4 HOH B 38 339 14 HOH HOH . H 4 HOH B 39 340 109 HOH HOH . H 4 HOH B 40 341 44 HOH HOH . H 4 HOH B 41 342 17 HOH HOH . H 4 HOH B 42 343 55 HOH HOH . H 4 HOH B 43 344 48 HOH HOH . H 4 HOH B 44 345 76 HOH HOH . H 4 HOH B 45 346 53 HOH HOH . H 4 HOH B 46 347 74 HOH HOH . H 4 HOH B 47 348 47 HOH HOH . H 4 HOH B 48 349 29 HOH HOH . H 4 HOH B 49 350 54 HOH HOH . H 4 HOH B 50 351 117 HOH HOH . H 4 HOH B 51 352 56 HOH HOH . H 4 HOH B 52 353 120 HOH HOH . H 4 HOH B 53 354 41 HOH HOH . H 4 HOH B 54 355 87 HOH HOH . H 4 HOH B 55 356 124 HOH HOH . H 4 HOH B 56 357 122 HOH HOH . H 4 HOH B 57 358 114 HOH HOH . H 4 HOH B 58 360 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . E 2 27.227 159.988 8.645 1 17.55 ? N1 FMN 201 B 1 HETATM 2 C C2 FMN . . . E 2 27.622 160.717 7.531 1 19.6 ? C2 FMN 201 B 1 HETATM 3 O O2 FMN . . . E 2 28.384 160.231 6.704 1 21.23 ? O2 FMN 201 B 1 HETATM 4 N N3 FMN . . . E 2 27.174 162.003 7.327 1 19.93 ? N3 FMN 201 B 1 HETATM 5 C C4 FMN . . . E 2 26.308 162.581 8.229 1 20.44 ? C4 FMN 201 B 1 HETATM 6 O O4 FMN . . . E 2 25.888 163.733 8.044 1 19.85 ? O4 FMN 201 B 1 HETATM 7 C C4A FMN . . . E 2 25.904 161.85 9.342 1 20.48 ? C4A FMN 201 B 1 HETATM 8 N N5 FMN . . . E 2 25.032 162.438 10.234 1 20.45 ? N5 FMN 201 B 1 HETATM 9 C C5A FMN . . . E 2 24.615 161.721 11.341 1 22.24 ? C5A FMN 201 B 1 HETATM 10 C C6 FMN . . . E 2 23.744 162.353 12.23 1 20.06 ? C6 FMN 201 B 1 HETATM 11 C C7 FMN . . . E 2 23.277 161.685 13.35 1 20.27 ? C7 FMN 201 B 1 HETATM 12 C C7M FMN . . . E 2 22.336 162.413 14.267 1 18.89 ? C7M FMN 201 B 1 HETATM 13 C C8 FMN . . . E 2 23.698 160.372 13.598 1 19.66 ? C8 FMN 201 B 1 HETATM 14 C C8M FMN . . . E 2 23.183 159.657 14.818 1 18.61 ? C8M FMN 201 B 1 HETATM 15 C C9 FMN . . . E 2 24.582 159.738 12.71 1 18.96 ? C9 FMN 201 B 1 HETATM 16 C C9A FMN . . . E 2 25.053 160.407 11.57 1 19.18 ? C9A FMN 201 B 1 HETATM 17 N N10 FMN . . . E 2 25.924 159.799 10.661 1 21.15 ? N10 FMN 201 B 1 HETATM 18 C C10 FMN . . . E 2 26.35 160.534 9.552 1 18.04 ? C10 FMN 201 B 1 HETATM 19 C C1' FMN . . . E 2 26.468 158.408 10.9 1 18.01 ? C1' FMN 201 B 1 HETATM 20 C C2' FMN . . . E 2 27.714 158.636 11.834 1 20.45 ? C2' FMN 201 B 1 HETATM 21 O O2' FMN . . . E 2 28.923 158.877 11.151 1 23.33 ? O2' FMN 201 B 1 HETATM 22 C C3' FMN . . . E 2 28.099 157.645 12.952 1 30.32 ? C3' FMN 201 B 1 HETATM 23 O O3' FMN . . . E 2 29.452 157.176 12.996 1 23.08 ? O3' FMN 201 B 1 HETATM 24 C C4' FMN . . . E 2 27.343 156.378 12.935 1 24.36 ? C4' FMN 201 B 1 HETATM 25 O O4' FMN . . . E 2 25.968 156.577 13.146 1 24.44 ? O4' FMN 201 B 1 HETATM 26 C C5' FMN . . . E 2 27.989 155.564 14.062 1 27.2 ? C5' FMN 201 B 1 HETATM 27 O O5' FMN . . . E 2 28.685 154.528 13.416 1 25.38 ? O5' FMN 201 B 1 HETATM 28 P P FMN . . . E 2 27.772 153.29 12.954 1 22.58 ? P FMN 201 B 1 HETATM 29 O O1P FMN . . . E 2 27.602 152.408 14.162 1 24.75 ? O1P FMN 201 B 1 HETATM 30 O O2P FMN . . . E 2 26.396 153.743 12.528 1 19.08 ? O2P FMN 201 B 1 HETATM 31 O O3P FMN . . . E 2 28.442 152.512 11.83 1 25.97 ? O3P FMN 201 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #